Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F2 I0 R1
|
117 |
5184.3 |
6857682 |
98.3% |
6741101 |
135.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,562,600 |
T→G |
17.7% |
Q123P (CAG→CCG) |
putA ← |
trifunctional transcriptional regulator/proline dehydrogenase/L‑glutamate gamma‑semialdehyde dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,562,600 | 0 | T | G | 17.7%
| 164.7
/ 6.1
| 118 | Q123P (CAG→CCG) | putA | trifunctional transcriptional regulator/proline dehydrogenase/L‑glutamate gamma‑semialdehyde dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (49/41); new base G (20/3); total (74/44) |
| Fisher's exact test for biased strand distribution p-value = 4.06e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 118 total aligned reads displayed.
GCCAGACACATCAGCGCCACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGG > NZ_CP022686/4562462‑4562734
|
gCCAGACACATCAGCGCCACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTg < 5:365573/140‑1 (MQ=255)
ccAGACCCATCAGCGCCACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTGGTTTTTTTTACGCCGTTTATAGGCCAGGTGATACGCCACGTTGTGCGCCGGt > 6:322754/1‑140 (MQ=255)
cAGACACATCAGCGCCACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTg < 1:394910/138‑1 (MQ=255)
acacATCCGCGCCACGCCTTCCTGCGATGACAACGAACACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCAAGTTGATACGCCAGTTTGTGCGCCTGTTCAg < 5:770696/140‑1 (MQ=255)
aTCAGCGCCACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGGAGTTTTTCGGGCCCTTGATACGCCCGTTTTTGCGCCGGTTCAGCTAc > 4:579064/1‑140 (MQ=255)
cgcCACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATAGGCTAGTTGATACCCCAGTTTGTGCGCCGGTTCAGCTACTGGcg > 4:785104/1‑139 (MQ=255)
ccACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTAAGCAGTTTATCGGCCAGTTGAAACGCCAGTTTGTGCGACTGTTCAGCTACTGGca > 8:736628/1‑137 (MQ=255)
aCGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTTAATACGCATGTTATCGGCCAGTTGGTACGCCAGTTTGTTCGGCTGTTCAGCGACTGGCTGc > 8:642195/1‑138 (MQ=255)
cGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGTTTTCGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGc > 3:682028/1‑140 (MQ=255)
cGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGAGTTAGAAGTTTATAGGCCAGTTGAGTCGCCAGATTGTGCGCCTGGTAAGCTACCGGCTGCg > 1:730590/1‑138 (MQ=255)
cGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTGTTTTTTATTAAGCAGTGTTTCGGCCCTGTGATACGACAAGTTGTGCGCCGGTTAAGCGACAGGCGGCCGc > 5:661924/1‑140 (MQ=255)
cGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAAACATACATGAGCGACAACTGGCGTTTTTTTGATTACGCAGTTTTTAGGACATTTGATGAGACATGTTGTTCGGCTGTTCCACTAATCGCTggcgc > 4:202593/1‑136 (MQ=255)
ccTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGACCCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTGTTTCGGCCATTGGCTTCGGCAGTTTGTGCGCCGGTTCATCGACTggcggcggc > 1:486485/1‑138 (MQ=255)
ccTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTTCGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCGGTTCAGCTACTGGCTGCggg > 2:145819/1‑137 (MQ=255)
ccTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGc > 2:579598/1‑138 (MQ=255)
cTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCa < 7:16524/138‑1 (MQ=255)
cTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAgg < 6:448347/140‑1 (MQ=255)
tCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCGGTTCAGCTACTGGCTGCGGCAGGCg > 4:783049/1‑140 (MQ=255)
cTGCGATGACAACGAACACTCCTGCAATAACCCCAGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCg < 7:84621/138‑1 (MQ=255)
cTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGTTTACGCAGTTTATAGGCCAGTTGATACGCCAGTTTGTGCGGCTGTTCAGCTACTTGGTGCGGCAGGCg > 7:400024/1‑138 (MQ=255)
cTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATAGGGCAGTTGATACGCCAGTTTTTGCGCCTGTTAAGCTACTGGCTGCGGCAGGCg > 1:505051/1‑138 (MQ=255)
tGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCgc > 1:582781/1‑137 (MQ=255)
gCGATGACAACGAAAACTCCTGCACTAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAg < 1:291553/138‑1 (MQ=255)
tGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGCCCACTGGCGTTTTTTTGTTTAAGCCGGTTATCGGCCAGTTTCTACGCCCGTTTGTGCGCCTGTTCAGCTACTGGCAGCGGCAGGCGAGCTTGtt > 5:492750/1‑140 (MQ=255)
gACAACGAAAACTCCTGCAATAACCCCTGCACCATACCTGCGCGACCACTGGCGTTTTTTTTATTACCCAGTTTATAGGCCACTTGATACGCCAGGTTGTGGGCCGGTTAAGCTAAAGGCGGGGGGCGGCGAGCATGt > 8:715279/1‑138 (MQ=255)
gACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACTCAGTTTTTCGGCCAGTTGATACGCCAGTTTGTGCGCCGGTTACGCTACAGGCTGCGGCAGGGGGGCgtgt > 1:818878/1‑138 (MQ=255)
aatgAATACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGACAGTTGATACGCCATTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCcag < 6:618990/137‑1 (MQ=255)
aCGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTTATTAAGAAGTATAAAGGCCAATTGATACGCCAGTTTTTGAGACTGTTAAGCTAAAGGCTGCGTAAGGCGACCTTGTTAcagc > 6:165174/1‑140 (MQ=255)
aCGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCcagc < 3:684072/140‑1 (MQ=255)
aCGAAAACTCCTGCAATAACCCCGGAACCATACCTGCGCGCCCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCAAGGTCATACGCCAGTTTGGGCGCCGGTGCCGCTACGGGCTGCGGCAGGCCAGCGTGTTCccgc > 4:528999/1‑140 (MQ=255)
aCGAAAACTCCTCCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCca < 7:778372/138‑1 (MQ=255)
cGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTTTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCcac > 1:849994/1‑137 (MQ=255)
cTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTTATTACGCAGTTTATAGGCCAGTTGATAAGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTACAGCAGCATaa > 4:407506/1‑139 (MQ=255)
cTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCAt < 8:430528/138‑1 (MQ=255)
tCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCTGTTTGTTCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATa < 2:253298/138‑1 (MQ=255)
tCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGa < 6:146279/140‑1 (MQ=255)
tGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGTCGAGCTTGTTGCAGCAGCATAGaa > 1:253162/1‑138 (MQ=255)
cAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTTTAGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCGGCGGCCGGCGAGCGTGTTCCAGCAGCAAAGAAAc > 1:730765/1‑138 (MQ=255)
tAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGTCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCtt < 3:504849/140‑1 (MQ=255)
tAACCCCAGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGc < 1:738650/138‑1 (MQ=255)
aaaCCCCTGAACCATACCTGCGCGCCCACTGGCGTTTTTTTGATTACGCAGTTTAGCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTGCCAGCAGCATAGAAACCGc < 8:462922/137‑1 (MQ=255)
aCCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATAGGCCAGTTGATAAGCCAGTTTTTGCGCCTTTTAAGCTACTGGCGGCGGCCGGCGAGCTTGTTACCGCAGCATAGAAACCGCTTCg > 5:59888/1‑140 (MQ=255)
aCCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGGTTATAGGCCAGTTGATACGCCAGTTTGTGCGCCGGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATATAAACCCCTTCg > 4:283712/1‑140 (MQ=255)
cccTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCCGCAGCATAGAAACCGCTTCg > 2:281731/1‑138 (MQ=255)
cccTGAACCATACCTGCGCGACCACTGGCGTGTTTTTGATTACGCAGTTTATAGGCCAGTTGATACGCCAGTTTGTGCGCCAGTTCAGCTACTGGCTGCGGCAGGCGAGCGTGTTCCCGCAGCCTAGAAACCGCATCg > 2:727436/1‑138 (MQ=255)
gAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGGTGATAACCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCCGGCGAGCGTGTTCCAGCAGCATAGATACCGCTTCGGTTTcc > 5:689782/1‑140 (MQ=255)
aaCAATACCTGCGCGACCACTGGCGTGTTTTTGATTACGCAGTTTATAGGCCAGGTGATACGCCACTTTTTGCGCCAGTTCAGCTACAGGCTGCGGCAGGCGAGCATGTTCCATCCGCATAGAAACCGCTTCGGgttg > 7:65495/1‑137 (MQ=255)
ccATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCg < 2:124738/138‑1 (MQ=255)
tACCTGCGCGACCACTGGCGTTTTTTTGATTTCGCAGTTTATAGGCCAGGTGATACCCCAGATTGTGCGCCTGTTCAGCTACTGGCTGCGGCCGGCGAGCGTGTTACAACAGCCAAGAAAACGCTTAGGTTTCCcggcgg > 6:153046/1‑140 (MQ=255)
tACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGGTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGGAGGCGCTCTTGTTAAAGCCTCATAGAAACCGATTCGGTTTgcgggcgg > 5:497662/1‑140 (MQ=255)
tACCTGCGCGACCACTGGCGTTTTTTTGATTACGCACTTTAAAGGCCAGGTTATACGCCCGTTTGTGCGCCTGTTCATCTACAGGCTGCGGGAGGCGGGCGTGTTGCAGCAGCATATAAAACGCTTCGGTTTgcgggcgg > 6:709845/1‑140 (MQ=255)
tACCTGCGCGACCACTGGCGTTTTTTTGATTAAGCAGTTTATCGGCCCGTTGATACGCCAGGTTGTTCGCCTGTTCAGCTACTGGCGGCGGCAGGCGCGCTTGTTCCAGCAGCATAGAAACCGCTTAGGTTTCCgggggg > 6:316555/1‑140 (MQ=255)
tACCTGCGCGACCACTGGCGTTTTTTTGATTAAGCAGTTTATCGGCCAGTTTATAAGACAGTGTGTGCGCCGGTTCAACTACTGGAGGCGGCAGGAGCGCTTATTACTGAATCATAGAAACCGCTTAGGGTTGCGggagg > 4:690388/1‑140 (MQ=255)
tACCTGCGCGACCACTGGCGTGTTTTTGATTACGCAGTTTTTGGGCCAGTTGATACGCCAGTTTGTGCGCCGGTTGAGCTACTGGCTGCGGCACGCGAGCTTGTTGCACCACCATAGAAACCGCATCGGGTTCCGggcgg > 4:286745/1‑140 (MQ=255)
tACCTGCGCGACCACTGGCGTGTTTTTGATTACGCAGTTTATCGGCCCGTTGATAAGCCAGTTTGTGCGCCGGTTCCGCTACTGGCTGCGGCCGGCGCGCTTGTTGCAGCAGCATAGAAACCGCTTCGGTTTACGggcgg > 6:793955/1‑140 (MQ=255)
tACCTGCGCGACCACTGGCGTGTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTAAGCGACTGGCTGCGGCGGGCGAGCTTGTTGCATCAGCATAGAAACCGCGTCGGTTTCCGggcgg > 5:764445/1‑140 (MQ=255)
ccTGCGCGACCACTGGCGTTTTTTTTATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTTCGCCTGTTAAGCTACTGGCTGCGGGATGCGAGCGTGTTACAGCAGCATAGAAACCGCTTCGGTTTCCGggcgg > 8:341534/1‑138 (MQ=255)
ccTGCGCGACCACTGGCGTTTTTTTGATTTCGCAGTTTATAGGCCAGTTGATACGCCAGTTTGTGCGCCGGGTCAGCTACTGGCTGCGGCAGGCGAGCTGTGTGCAGCAGCATAGAAACCGCTACGGTATACGggcgg > 8:252399/1‑138 (MQ=255)
ccTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTGTATAGGCCAGGTGATACGCCAGTTTGTGCGCCTGTTCCGCAACAGGCTGCGGCCGGCGCGCGTGTTCCCGCAGCCTATAAACCGCGTCGGGTTCCGggcgg > 2:755865/1‑138 (MQ=255)
ccTGCGCGACCACTGGCGTTTTTTTGATTAAGCAGTTTATCGGCCAGTTGATAAGCCAGTTTGTGCGCCTGTTAAGCTACTTGCTGCGGCAGGCGAGCTTGTTCCATCATCATAGAAACCGCTTCGGTTTACGggcgg > 7:626556/1‑138 (MQ=255)
ccTGCGCGACCACTGGCGTTTTTTTGATTAAGCAGTTTATCGGCCAGTTGAGACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGGGCGTGTTCCCGCAGCATAGAAACATCGTCGGGTTCCGggcgg > 2:584527/1‑138 (MQ=255)
ccTGCGCGACCACTGGCGTGTTTTTTATTACGCAGTTTTTCGTCCATTTGATACGCCAGTTTTTGCGCCTTTTAAGATACTGGCTGCGGCAGGCGAGCTTGTTACAGCAGCATAGAAAACGCTTCGGTTTACTggcgg > 8:555285/1‑138 (MQ=255)
ccTGCGCGACCACTGGCGGGTTTTTGATTAAGCAGTTTATCGGCCCGGTGATACGCCAGGTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGCGCTTGGTGCAGCCGCCTAGAAACCGCGTCGGGTTCCGggcgg > 2:805958/1‑138 (MQ=255)
cgcgACCACTGGCGTTTTTTTTATTTCGCAGTTTATCGGCCAGTTTCTACGCCCGTTTGTGCGCCTGTTCAGCTACTGGGTGCGGCAGGCGAGCTTGTTACAGCAGCATAGAAACCGCATCGGTTTACGGGCGGCGATAg > 6:4067/1‑140 (MQ=255)
cgcgACCACTGGCGTTTTTTTTATTACGCAGTTTTTAGGCCAGATGATACGCCAGTTTGTGCGCCTATTCAGCTTCTGGCTGCGGGAGGCGAGCTTTTTGCAGCAGCATAGAAACCGCTTAGGTTTACGGGCGGCGaaat > 6:415371/1‑137 (MQ=255)
cgcgACCACTGGCGTTTTTTTTATTACGCAATTTTTAAGGCAGTTGATACACCAGGTTGTGCTGAAGTTAAGAAAAAGGCGGCGGAAGGCGTCCTTTTAGCACCAGCATAGAAAACCATTAGGTTTACGGGCCGCGATat > 4:99884/1‑139 (MQ=255)
cgcgACCACTGGCGTGTTTTTGATTAAGGAGTTTTTCGGCCAGTTGGTACGCCAGGTTGTGCGCCGGTTCAGCGACTGGCTGCGGCAGGGGAGCTTGTTGCCGCCGCATAGAAACCGCTTCGGTTTGCGGGCGGCGATAg > 6:527909/1‑140 (MQ=255)
cgcgACCACTGGCGTATTTTTGAATAAGCAGTTTATCGGCCAGTTGAATCGCCAGTTTGATCCCCAGTTCAACAACTGGGAGCGGAAGGGGAGCTTGTTGAAGCCGCCTAGAAACACCTTCGGGTTACGTGCGGCGATAg > 6:754819/1‑140 (MQ=255)
gcgACCACTGGCGTTTTTTTTTTTTAGCAGTTTTTAGGCGCGTTGGTGAGGCCGTTTGTGCGCCTGTTGAGCTAGTGGCTGCGGGAGGCGAGCGTTTGCCCCCAGCATAGTAAACGCATGGGGTTCCGggcgggggta > 8:314703/1‑133 (MQ=255)
cgACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGCGCGTGTTCCAGCAGCCTAGAAACCGCTTAGGTTTACGGGCGGCGATAg > 8:13598/1‑138 (MQ=255)
aCCACTGGCGTGTTTTTTATTTAGGAGTTTATCCGGCAGTTGATTCGCCAGGTTGTGCGCCTGTTCAGCTACTGGCTGCGGCCGGCGCGCTTGTTCCAGCAGGATAGAAACCGCTTCGGTTTCCGGGCGGCGATAggcgg > 4:391195/1‑140 (MQ=255)
ccACTGGCGTTTTTTTGATTACGCCGTTTATGGGGCAGTTGATACGCCAGTGTGTGCGCCGGTTCAGCTCCTGGCTGCGGCAGGCGAGCGTGGTCCAGCAGCCTAGAAAACCCATCGGGGTCCGGGCGGCGAGAggcggg > 6:496488/1‑139 (MQ=255)
aCTGGCGTGTTTTTGGTTTCGCAGGTTTTCGGGCCGGTGTTACGCCAGTTTGTGGGCCGGGTGAGCTACTGGCTGGGGCGGGGGCGGGTGTTGCAGCAGCATAGAAACCGCGTCGGGTTGCGGGCGGGGCTAGGgggcgg > 4:585016/1‑140 (MQ=255)
cGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGa < 7:673863/138‑1 (MQ=255)
ttttttGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGGGCGCCTGTGCAGCTACTGGCTGCTGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATgg < 7:431720/138‑1 (MQ=255)
ttGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGgcgc < 4:171178/140‑1 (MQ=255)
gTTTATCGGCCAGTTGCTACGCCAGTTTGTCCGCCTGTTCAGCTACTGGCGGCGGCAGGCGATCGTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGAc < 5:823642/140‑1 (MQ=255)
gTTTATCGGCCAGGTGATACGCCAGTTTGTGCGCCGGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTGCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCg < 8:42087/138‑1 (MQ=255)
gTTTATCGGCAAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGATCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCg < 8:172694/138‑1 (MQ=255)
ctttATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCACCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACAGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGCTGGCGGCGCGGGAAACCg < 7:466457/137‑1 (MQ=255)
ctttAGCGCCCAGTTGATCCGCGAGATTGTGCGCCTGTTCCGCTCCTGGCGGCGGCTGGCGAGCTTGGTCCAGCAGCATCGAACCCGCATCGCTTTCCGGGCGGCGATAGGCGGCGGTGCTTGCGGCGAGGAAAACCGAc < 4:504079/139‑1 (MQ=255)
tttATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGACACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAGCCGACt > 4:432151/1‑140 (MQ=255)
tttATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGa < 2:582781/138‑1 (MQ=255)
tttATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACt < 6:733330/140‑1 (MQ=255)
tCGGCCAGTTGATCCGCCAGTTTGTGCGCCTGTGCAGCTACTGGCGGCGGCAGGCGAGCTTGTACCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTgggg < 5:41312/140‑1 (MQ=255)
tCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTgg < 2:92117/138‑1 (MQ=255)
cGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTggg < 8:397263/138‑1 (MQ=255)
aGTTGATACGCCATTTTGTGCGCCTGTTCAGCTAGTGGCTGCGGCAGGCTAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGGGATGGCGGCGCGGGAAACCGACTGGGGCAat < 7:691242/138‑1 (MQ=255)
aGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAatat > 6:98515/1‑140 (MQ=255)
aGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTGGTTACAGCAGCATAGAAACCGCTTCGGTTTACGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAGCCGACCGGGGCAatat > 6:149457/1‑140 (MQ=255)
aGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGAGGCAGGCGAGCTTGTTCCAGAAGCATAGAAACAGCTTCGGTTTCCGGGCGGGGATAGGCGGCGGGGATGGCGGCGCGGGAAACCGCAGGGGGCAatat > 5:635575/1‑140 (MQ=255)
ttGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAACCCGACTGGGGCAatat > 2:118455/1‑138 (MQ=255)
tACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGc > 8:703735/1‑138 (MQ=255)
ccAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCgg < 7:327220/138‑1 (MQ=255)
ccAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCa < 5:132047/140‑1 (MQ=255)
tttGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCaaa < 1:813818/138‑1 (MQ=255)
tttGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGt > 3:692558/1‑140 (MQ=255)
gcgcCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAgg > 3:750249/1‑140 (MQ=255)
cgcCTGTTCAGCTTCTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAACCCGCTTCGGGTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAg < 7:45348/138‑1 (MQ=255)
cgcCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGGTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATCGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAg < 7:621637/138‑1 (MQ=255)
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GCCAGACACATCAGCGCCACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGG > NZ_CP022686/4562462‑4562734
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
