Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F35 I0 R1
|
304 |
9232.4 |
10623078 |
98.3% |
10442485 |
135.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NZ_CP022686 |
4,562,600 |
T→G |
12.4% |
Q123P (CAG→CCG) |
putA ← |
trifunctional transcriptional regulator/proline dehydrogenase/L‑glutamate gamma‑semialdehyde dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP022686 | 4,562,600 | 0 | T | G | 12.4%
| 337.3
/ 2.6
| 184 | Q123P (CAG→CCG) | putA | trifunctional transcriptional regulator/proline dehydrogenase/L‑glutamate gamma‑semialdehyde dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (76/70); new base G (26/3); total (111/73) |
| Fisher's exact test for biased strand distribution p-value = 1.34e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 186 total aligned reads displayed.
GCCAGACACATCAGCGCCACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAAAGG > NZ_CP022686/4562462‑4562739
|
gCCAGACACATCAGCGCCACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTg < 5:1282249/140‑1 (MQ=255)
gCCAGACACATCAGCGCCACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTg < 7:563571/140‑1 (MQ=255)
cAGACACATCAGCGCCACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGtt < 1:742937/140‑1 (MQ=255)
cAGACACATCAGCGCCACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTCAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGtt < 2:215164/140‑1 (MQ=255)
gACACATCAGCGCCACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTGTTTTTGATTACGCAGTTTATCGGCCAGGTGATACGCCCGTTTGTGCGCCTGTTCa > 7:1032982/1‑140 (MQ=255)
aTCAGCGCCACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTGTTTTTTTTTAAGCAGTTTATAGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTAAGCTAc > 2:467825/1‑140 (MQ=255)
tCAGCGCCACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGGTTATCGGCCAGTTGATACGCCAGGTTGTGCGCCTGTTCAGCTACt > 5:429529/1‑140 (MQ=255)
tCAGCGCCACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTGTTTTTGATTACGCAGTTTATCGGGCAGTTTTTAAGCCAGTTTGTGCGCCGGTTCAGCGAca > 1:1059145/1‑139 (MQ=255)
gcgcCACGCCTTCCTGCGAAGACAACGAAAACTCCTGCAATAACACCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGGTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGc < 6:125001/140‑1 (MQ=255)
cgcCACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTGTTTTTGATTTAGCAGTTTTTCGGGCAGTTGGTAAGCCCGTTTGTTCGCCGGTTAAGCTAATGGcg > 1:57483/1‑139 (MQ=255)
cgcCACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTGTTTTTGATTACGCAGTTTATCGGGCAGTTGATACGGCAGTTTGTGCGCCTGTTCAGCTACTGGCt > 6:799542/1‑140 (MQ=255)
cgcCACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGGGTTTTTGCTTACGCAGGTTATCGGCCCGGTGGTACGCCAGGTTGTGGGCCTGTTCCGCTACTGGcg > 5:550115/1‑139 (MQ=255)
cACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGAAGTTTATAGGCCAGTTGAGACGCCAGTTTGTGCGCCGGTTAAGCTAATAGCTGCg > 1:1008986/1‑140 (MQ=255)
cGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGTTTAAGCAGTTTATCGGCCAGTTGATAACCCAGTTTGTTCGCCTGTTAACCTACTGGCTGCGGc > 1:721463/1‑140 (MQ=255)
cGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGTTTAAGCAGGTTATCGGGCACTTGATAAGCCCGTTTGTGCGCCTGTTAAGAAACTGGCTggggg > 5:254550/1‑139 (MQ=255)
cGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTGTTTTTGATTACGCAGTGTATCGGCCCGGTGATTAGCCCGTTTGTTCGGCGGTTCAGCTACTGGCTGCggg > 1:235806/1‑139 (MQ=255)
cGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCACTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATAGGCCCTATTCTACGCCAGTTTGTGGGCCAGTTAAGCTAAAGGCTTCGGc > 6:340601/1‑140 (MQ=255)
ccTTCCTGCGATGACAACGAAAATTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTAAGCAGTTTATAGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTAAGCAACTGGCTGCGGc > 4:302168/1‑138 (MQ=255)
ccTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTTATTAAGCCGTTTATAGGCCAGTTTAAACGCCACTTTGTGCGCCGGTTGAGCTAATGGCTGCGGc > 3:29471/1‑138 (MQ=255)
ccTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTGTTTTTGAATAAGCAGTTTATCGGCCAGGTGATACGCCAGTTTGTGCCCCGGTTCAGCTACAGGCAGCGGc > 4:165438/1‑138 (MQ=255)
ccTTCCTGCGATGACAACGAAAACTCCTGCAATAACCACTGAACCATACCTGCGCGACCACTGGCGTGTTTTTGATTACGCAGTTTATCGGCCAGTTTAAACGCCAGTTTGTGCGCCGGTTCAGCGACTGGCTGGGGc > 3:1182248/1‑138 (MQ=255)
ccTTCCTGCGAGGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGGGTTTTTGATTCCGCAGTTTATCGGCCAGTTGTTACGCCAGGTTGTGAGCCTGTTAAGCTACTGGCTGCGGc > 4:744627/1‑138 (MQ=255)
ttCCTGCGATGACAACGAAACATCCTGCAATAAACACATAACCATACCTGCGCGAACACTGGCGTTATTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTTGCTGCGGAAGGc < 8:289299/140‑1 (MQ=255)
cTGCGATTACAACGAAAACTCCTCCACAAACCCCTGAACCATACCTGCGAGACCACTGGCGTTTTTTTGATTACGCAGGTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCg < 4:826496/138‑1 (MQ=255)
cTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAg < 2:1366175/140‑1 (MQ=255)
gCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCt < 8:338553/140‑1 (MQ=255)
gCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCt < 1:94120/140‑1 (MQ=255)
gCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCt < 8:524015/140‑1 (MQ=255)
aTGACAACGAAAACTCCTGCAATGACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTAAGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGt > 8:224644/1‑140 (MQ=255)
aCAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGTTACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCATGtt > 4:911740/1‑138 (MQ=255)
aCGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCcagc < 7:238165/140‑1 (MQ=255)
aCGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCcagc < 7:514972/140‑1 (MQ=255)
aCGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCcagc < 2:1306172/140‑1 (MQ=255)
aCGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCcagc < 7:35684/140‑1 (MQ=255)
aCGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCcagc < 6:104914/140‑1 (MQ=255)
aCGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCca < 3:26315/138‑1 (MQ=255)
aCGAAAACTCCTGCAATAACCCCCGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCcagc < 5:939010/140‑1 (MQ=255)
aCGAAAACTCCTGCAATAACCCATGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCca < 4:78732/138‑1 (MQ=255)
aCGAAAACTCCTGCAAAAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCca < 3:4038/138‑1 (MQ=255)
gAAAACTCCTGCAATTCCCCCTGAACCATACCTGCGCGACCACTGGCTTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCcagcag < 8:801353/140‑1 (MQ=255)
cTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAg < 1:731356/140‑1 (MQ=255)
aaTAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGGTTATAGGCCACTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAAcc > 4:1060667/1‑138 (MQ=255)
aCCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTTATTAAGCAATTTATAGGCCAAGTGATAAGCCAGTTTGTGCGCCTGTTACGCTAATGGCTGCGGCACGCTGGCGTGTTACAACCCCATAGAAACCACATCg > 5:1121147/1‑140 (MQ=255)
aCCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCagcagc < 7:1116647/125‑1 (MQ=255)
cccTGAACCATACCTGCGCGACCACTGGCGTTTTTTTTATTAAGCAGTTTATCCGCCAGTTGATAACCCAGTTTGTGCGCCAGTTAATGTACAGGCAGCGGCAGGGGCTCTTTTTCCAGCAGCATAGAAACCGCTTCg > 3:1190135/1‑138 (MQ=255)
cccTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATAGGCCAGTTGATAAGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCg > 4:1322001/1‑138 (MQ=255)
ccATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCggg < 2:477255/140‑1 (MQ=255)
tACCTGCGCGACCACTGGCGTTTTTTTGTTTAAGCAGTTTATAGGGCAGTTGATACGCCAGGTTGTGCGCCGGTTCAGCTTATGGCTGGGGGAGGGGAGCGTGTTGCCGCCGCATAGAAACCGCTTAGGTTTgcgggcgg > 2:55529/1‑140 (MQ=255)
tACCTGCGCGACCACTGGCGTTTTTTTGATTTCGCAGTTTATCGGCCAGTTGATACGCCCGTTTGTGCCCCTGTTCAGCTACTGGCGGCGGCAGGCGTGCTTGTTCCAGCCGCATAGAAACCCCTTAGGGTTCCGggcgg > 2:994687/1‑140 (MQ=255)
tACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGAGCCTGTTCAGCTACTTGCTGGGGCAGGCGAGCTTGTTCCAGCAGCATATAAACCGCTTCGGTTTgcgggcgg > 2:844784/1‑140 (MQ=255)
tACCTGCGCGACCACTGGCGTTTTTTTGATTAAGGCTGTTATAGGGCATTTGATACCCCAGTTTGTTCTCCAGTTCAGCGACTGGCGGCGGCAGGCGGGCTTGTTGCAACCGCATATAAACCGCTTCCGTTTCCgggggg > 6:33556/1‑140 (MQ=255)
tACCTGCGCGACCACTGGCGTGTTTTTGATTACGCAGTTTTTGGGCCAGTTGATACGGCAGTTTGTGCGCCGGTTCAGCTACAGGCGGCGGCAGGCGCGAGTGTTACCGCACCAAAGTAAACCCATCGGTTTgcgggcgg > 6:391248/1‑140 (MQ=255)
tACCTGCGCGACCACTGGCGTGTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCCGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTACAGCCGCAAAGAAACCGCTTCTGTTTCCgggggg > 2:796873/1‑140 (MQ=255)
tACCTGCGCGACCACT‑GCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTAAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTAGGTTTCCGggcggc > 6:288974/1‑140 (MQ=255)
ccTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGggcgg > 4:1043106/1‑138 (MQ=255)
ccTGCGCGACCACTGGCGTGTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCGGTTCAGCTACTGGCTGCGGCAGGCGAGCTTTTTCCCGCAGCATATAAACCGCTTCGGTTTgcgggcgg > 4:634306/1‑138 (MQ=255)
gcgcGACCACTGGCGTGTTTTTGATTACGCAGTTTATCGGGCAGTTGATACGCCAGGTTGTGCGCCTGTTCAGCTTCTGGCTGGGGGCGGCGAGCGTGGTGCCGCAGCATAGAAACCGCTTCGGGTTGCGGGCGGGGaga > 6:251229/1‑138 (MQ=255)
gcgcGACCACTGGCGTGTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCGGGTCAGCTACTGGCTGCGGCAGGCGAGCGTGGTGCCGCAGCATAGAAACCGCTTCGGGTTACGGGCGGCGCTa > 2:600128/1‑140 (MQ=255)
gcgcGACCACTGGCGTGTTTTTGAGTACCCAGGTTATCGGCCAGTTTATACGCCAGTTTGTGCGCCATGTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTGCAGCAGCAAAGAAACCGCATCGGTTTCCGGGCGGCGATa > 6:482174/1‑140 (MQ=255)
ctcgACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATTCGCCAGTTTTTGCGCCTGTTGAGCTACTTGCTGCGGCCGGCGCGCTTGTTACAGCAGCATAGAAACCGCTTCGGTTTCCGGgcggcgcttt > 6:512363/3‑136 (MQ=255)
cgcgACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGCTAg > 2:1344267/1‑140 (MQ=255)
cgcgACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAg > 2:949797/1‑140 (MQ=255)
cgcgACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATAAGCCAGGTTGTGCGCCTGTTAAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCCGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGAttt > 2:977907/1‑138 (MQ=255)
cgACCACTGGCGTTTTTTTGATTTCGCAGGTTTTCGGGCAGTTGATACGCCAGGTTGTGCGCCGGTTAAGCTACTGGGGGCGGCCGGCGAGCTTGGTCCAGCAGCATAGAAACCGCATCGGTTTCCGGGCGGCGATAg > 4:54278/1‑138 (MQ=255)
cgACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGGCAGTTGATACGCCAGGTTGTGCGCCGGGTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTACGGGCGGCGATAg > 4:370161/1‑138 (MQ=255)
aCCACTGGCGTGTTTTTGATTAAGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCGGTTGAGCTACTGGCTGCGGCAGGCGCGCGTGTTGCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAggcgg > 2:365992/1‑140 (MQ=255)
ggCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGa < 8:934926/140‑1 (MQ=255)
ttttttGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCa < 3:658250/72‑1 (MQ=255)
ttttttGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATggcg < 6:615640/140‑1 (MQ=255)
ttttttGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATggcg < 8:364224/140‑1 (MQ=255)
ttttttGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTGCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATggcg < 8:1082450/140‑1 (MQ=255)
atttttGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATggcg > 8:142368/2‑140 (MQ=255)
tttGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCGGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGgcggcg < 6:1161285/140‑1 (MQ=255)
cctcAGTTTATCGTCCAGTTGATCCGCCAGTTTGGGCGCCGGGTCAGCTACTGGCTGCGGCATGCGAGCTTGGTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGaaa < 6:1288/137‑1 (MQ=255)
aCGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGaaa < 8:42160/140‑1 (MQ=255)
gTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCg < 4:1223584/138‑1 (MQ=255)
gTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCg < 4:436035/138‑1 (MQ=255)
gTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGAc < 5:832556/140‑1 (MQ=255)
tttATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCAGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACt < 2:1007054/140‑1 (MQ=255)
cGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCTGCTACTGGCTGCTGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCTCTTCGTTTTCCGGGCTGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGc < 2:1192262/140‑1 (MQ=255)
ccAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAat < 6:979363/140‑1 (MQ=255)
aGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAatat > 1:16767/1‑140 (MQ=255)
aGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAatat > 2:456897/1‑140 (MQ=255)
aGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAatat > 1:628855/1‑140 (MQ=255)
aGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCAAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGTCGCGGGAAACCGACTGGGGCAatat > 5:382881/1‑140 (MQ=255)
ttGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAatat > 4:1111658/1‑138 (MQ=255)
ttGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAatat > 3:876283/1‑138 (MQ=255)
ttGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAatat > 4:814592/1‑138 (MQ=255)
ttGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATAttt > 5:669339/1‑140 (MQ=255)
aCGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCg > 7:681935/1‑140 (MQ=255)
ccAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCa < 5:776842/140‑1 (MQ=255)
aGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGATCTTGTTCCAGCAGCATAGAAACCGCTTCTGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGAGGGAAACCGACTGGGTCAATATTTGCTCGGCaat > 5:403177/1‑139 (MQ=255)
tttGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCaaa > 4:185974/1‑138 (MQ=255)
tttGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGt > 7:215719/1‑140 (MQ=255)
tttGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGt < 1:537589/140‑1 (MQ=255)
gcgcCTGTTCAGCTACTGGCTGCGGCAGGCGAGCGTGTGCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAgg < 5:482174/140‑1 (MQ=255)
cgcCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGa < 7:436590/140‑1 (MQ=255)
cgcCTGGTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAg < 3:301130/138‑1 (MQ=255)
ccTGTTCAGCTAATGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCTGAGATAGGCGGCGGTGATGGCGGCGCTGGAAACCTACTGGGGCAATATTTGCTCGGCAAAGTCGAGGa > 3:713749/1‑138 (MQ=255)
tGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAAAgg > 8:1170333/1‑140 (MQ=255)
|
GCCAGACACATCAGCGCCACGCCTTCCTGCGATGACAACGAAAACTCCTGCAATAACCCCTGAACCATACCTGCGCGACCACTGGCGTTTTTTTGATTACGCAGTTTATCGGCCAGTTGATACGCCAGTTTGTGCGCCTGTTCAGCTACTGGCTGCGGCAGGCGAGCTTGTTCCAGCAGCATAGAAACCGCTTCGGTTTCCGGGCGGCGATAGGCGGCGGTGATGGCGGCGCGGGAAACCGACTGGGGCAATATTTGCTCGGCAAAGTCGAGGAAAGG > NZ_CP022686/4562462‑4562739
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
