Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F3 I154 R1
|
12 |
36.3 |
2142882 |
95.4% |
2044309 |
85.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
4,172,812 |
T→G |
V547G (GTT→GGT) |
rpoB → |
DNA‑directed RNA polymerase subunit beta |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 4,172,812 | 0 | T | G | 98.3%
| 220.1
/ ‑3.6
| 59 | V547G (GTT→GGT) | rpoB | DNA‑directed RNA polymerase subunit beta |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base G (25/33); total (26/33) |
| Fisher's exact test for biased strand distribution p-value = 4.41e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.19e-01 |
CAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCT > NZ_CP009273/4172726‑4172896
|
caacCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCg < 1:703297/90‑1 (MQ=255)
caacCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCg < 1:466957/90‑1 (MQ=255)
aacCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCga < 2:955104/90‑1 (MQ=255)
aacCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCga < 1:147015/90‑1 (MQ=255)
aacCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCga < 2:133140/90‑1 (MQ=255)
aacCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCga < 1:543619/90‑1 (MQ=255)
acCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCgag < 1:175254/90‑1 (MQ=255)
acCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCgag > 2:701380/1‑90 (MQ=255)
ccGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGAc > 2:171066/1‑90 (MQ=255)
cTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTa > 1:118609/1‑90 (MQ=255)
cTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTa > 2:532564/1‑90 (MQ=255)
cTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTa > 2:274507/1‑90 (MQ=255)
cTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTa > 1:1016184/1‑90 (MQ=255)
tCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTacac < 2:607828/90‑1 (MQ=255)
cTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACAcc > 1:947497/1‑90 (MQ=255)
tGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACGccc < 2:118609/90‑1 (MQ=255)
tGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACAccc < 2:130337/90‑1 (MQ=255)
gaTTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGAc < 1:831192/90‑1 (MQ=255)
gaTTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGAc < 1:746234/90‑1 (MQ=255)
aCGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCAc > 2:749656/1‑90 (MQ=255)
aCGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCAc > 2:235933/1‑90 (MQ=255)
aCGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCAc > 2:227832/1‑90 (MQ=255)
aCGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCAc > 1:758224/1‑90 (MQ=255)
aCGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCAc > 1:426119/1‑90 (MQ=255)
aaaCGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACATGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGt > 2:839631/1‑90 (MQ=255)
aaCGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCATTACGGTc < 2:779843/90‑1 (MQ=255)
aaCGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTc < 2:689202/90‑1 (MQ=255)
gtATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTAt > 2:283903/1‑90 (MQ=255)
aTCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGt > 1:49708/1‑90 (MQ=255)
ctcCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTcc < 2:577793/90‑1 (MQ=255)
ctcCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTcc < 2:197454/90‑1 (MQ=255)
aCTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGAc < 1:779787/63‑1 (MQ=255)
aCTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGAc > 2:779787/1‑63 (MQ=255)
cTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGaa < 1:532564/90‑1 (MQ=255)
cGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCgaga < 2:336952/48‑1 (MQ=255)
cGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCgaga > 1:336952/1‑48 (MQ=255)
cGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAAc > 2:380031/1‑90 (MQ=255)
ggCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGaa > 2:706020/1‑90 (MQ=255)
ggCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGaa < 2:639478/90‑1 (MQ=255)
gCGGTCTGACCCGTGAACGTGCGGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAg < 2:544756/90‑1 (MQ=255)
tCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGAc < 1:311034/48‑1 (MQ=255)
tCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGAc > 2:311034/1‑48 (MQ=255)
tCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTcc > 2:594813/1‑90 (MQ=255)
tCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTcc > 2:548529/1‑90 (MQ=255)
cTGCCCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCg < 1:673767/90‑1 (MQ=255)
cTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCg < 1:322996/90‑1 (MQ=255)
tGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGa < 2:1016184/90‑1 (MQ=255)
aaCGTGCAGGCTTCGAAGGTCGAGACGTTCACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTc < 2:62841/90‑1 (MQ=255)
aaCGTGCAGGCTTCGAAGGTCGAGACGTACCCCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTc < 2:1016429/90‑1 (MQ=255)
aaCGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTc < 2:435687/90‑1 (MQ=255)
aaCGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTc < 1:186314/90‑1 (MQ=255)
aaCGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTc < 1:252413/90‑1 (MQ=255)
cGTGCAGGCTTCTAAGGTTGAGTCGTACACCCGACTCACTACGGTCGCGTATTTCCAATCTAAACCCCTGAAAGGCCGAACATCGGTCTg < 1:432464/90‑1 (MQ=255)
cGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTg > 1:334741/1‑90 (MQ=255)
cAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCa < 1:380031/90‑1 (MQ=255)
aGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCaa > 1:194795/1‑90 (MQ=255)
cTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAActc > 1:38609/1‑90 (MQ=255)
cTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAActc < 1:701380/90‑1 (MQ=255)
cGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAActctct > 2:327799/1‑90 (MQ=255)
|
CAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCT > NZ_CP009273/4172726‑4172896
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTATGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCAC > NZ_CP009273/4172713‑4172910
|
TTATGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGG < SRR3722024.844337/100‑1 (MQ=60)
GAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTA > SRR3722024.1031640/1‑100 (MQ=60)
GAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTA > SRR3722024.120071/1‑100 (MQ=60)
CAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACAC < SRR3722024.713395/100‑1 (MQ=60)
CAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACAC < SRR3722024.472798/100‑1 (MQ=60)
AACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACC > SRR3722024.961924/1‑100 (MQ=60)
AACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACC < SRR3722024.550775/100‑1 (MQ=60)
AACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACC < SRR3722024.148918/100‑1 (MQ=60)
ACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCC < SRR3722024.177513/100‑1 (MQ=60)
GTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCAC > SRR3722024.769420/1‑100 (MQ=60)
GTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCAC > SRR3722024.431380/1‑100 (MQ=60)
ctcgtgggctcggagatgtgtataagagacaGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGT < SRR3722024.315039/69‑1 (MQ=60)
atgtgtataagagacagGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGT < SRR3722024.791332/83‑1 (MQ=60)
GATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGT < SRR3722024.843600/100‑1 (MQ=60)
GATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGT < SRR3722024.757223/100‑1 (MQ=60)
CAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGT > SRR3722024.50358/1‑100 (MQ=60)
TCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGctgtctcttatacacatctccgagcccacgag > SRR3722024.341266/1‑68 (MQ=60)
CTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAG < SRR3722024.539551/100‑1 (MQ=60)
CTGCCCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTC < SRR3722024.683239/100‑1 (MQ=60)
CTGACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTC < SRR3722024.327144/100‑1 (MQ=60)
GACCCGTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTG > SRR3722024.339030/1‑100 (MQ=60)
GTGAACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAA > SRR3722024.197342/1‑100 (MQ=60)
AACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTC < SRR3722024.255671/100‑1 (MQ=60)
AACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTC < SRR3722024.188736/100‑1 (MQ=60)
AACGTGCAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTC > SRR3722024.39115/1‑100 (MQ=60)
CGTGCAGGCTTCTAAGGTTGAGTCGTACACCCGACTCACTACGGTCGCGTATTTCCAATCTAAACCCCTGAAAGGCCGAACATCGGTCTGATCAACTCTC < SRR3722024.437798/100‑1 (MQ=60)
CAGGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTC < SRR3722024.384806/100‑1 (MQ=60)
GGCTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCG > SRR3722024.346433/1‑100 (MQ=60)
CTTCGAAGGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTG < SRR3722024.711435/100‑1 (MQ=60)
GGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCAC < SRR3722024.993159/100‑1 (MQ=60)
GGTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCAC < SRR3722024.1062985/100‑1 (MQ=60)
|
TTATGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCAATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCTCTGTCCGTGTACGCAC > NZ_CP009273/4172713‑4172910
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
