Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F3 I160 R1
|
220 |
104.1 |
6051714 |
95.9% |
5803593 |
84.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
1,761,086 |
A→C |
R619R (CGT→CGG) |
ydiJ ← |
FAD‑binding and (Fe‑S)‑binding domain‑containing protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 1,761,086 | 0 | A | C | 100.0%
| 337.8
/ NA
| 89 | R619R (CGT→CGG) | ydiJ | FAD‑binding and (Fe‑S)‑binding domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (36/53); total (36/53) |
GGGCAATTAACGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAAACGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGAC > NZ_CP009273/1761001‑1761171
|
gggCAATTAACGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCa > 2:1130269/1‑90 (MQ=255)
gggCAATTAACGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCa > 2:1984443/1‑90 (MQ=255)
cAATTAACGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGcc < 1:2493653/90‑1 (MQ=255)
cAATTAACGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGcc < 2:551802/90‑1 (MQ=255)
cAATTAACGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGcc < 2:2210538/90‑1 (MQ=255)
ttAACGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCAtt < 1:1914165/90‑1 (MQ=255)
tAACGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTc < 1:154196/90‑1 (MQ=255)
aCGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACTGCAGCCATTCAc < 2:1024841/90‑1 (MQ=255)
aCGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCAc < 1:2282458/90‑1 (MQ=255)
aCGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCAc < 1:706576/90‑1 (MQ=255)
gTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGc < 2:1474457/90‑1 (MQ=255)
gTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGc < 2:2068722/90‑1 (MQ=255)
ccGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCAc > 2:2825357/1‑90 (MQ=255)
ccGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCAc > 1:1193534/1‑90 (MQ=255)
ccGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCAc > 2:2755057/1‑90 (MQ=255)
ccGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCAc > 2:802266/1‑90 (MQ=255)
ccGCAAACTGACGCCGGATTCAGGCAATTCTTGTTCCAGTTTGATTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCAc > 1:2435481/1‑90 (MQ=255)
cGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCAcc < 2:3023843/90‑1 (MQ=255)
gCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCa > 1:2462858/1‑90 (MQ=255)
aaaCTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGc < 2:2173705/90‑1 (MQ=255)
cGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTgcgc < 2:2598456/90‑1 (MQ=255)
cGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTgcgc < 1:752408/90‑1 (MQ=255)
cGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTgcgc < 2:747691/90‑1 (MQ=255)
cGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTgcgc < 1:313233/90‑1 (MQ=255)
cGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTgcgc < 1:2825357/90‑1 (MQ=255)
cGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTgcgc < 2:2755448/90‑1 (MQ=255)
cGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTgcgc < 1:1984443/90‑1 (MQ=255)
ccGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTgcgcgc < 1:384830/90‑1 (MQ=255)
ccGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTgcgcgc < 1:874407/90‑1 (MQ=255)
ccGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTgcgcgc < 1:769540/90‑1 (MQ=255)
aTTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCtt < 1:1626167/90‑1 (MQ=255)
aTTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCtt < 1:1450095/90‑1 (MQ=255)
tCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTc < 2:2462858/90‑1 (MQ=255)
aGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCAc < 2:2277685/65‑1 (MQ=255)
aGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCAc > 1:539961/1‑65 (MQ=255)
aGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCAc < 2:539961/65‑1 (MQ=255)
aGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCAc > 1:2277685/1‑65 (MQ=255)
aGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCgg < 2:1848202/90‑1 (MQ=255)
aGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCgg > 1:2769271/1‑90 (MQ=255)
aGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCgg > 1:1116474/1‑90 (MQ=255)
gTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGtgaat > 1:1079367/1‑90 (MQ=255)
gTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGtgaat > 1:2527551/1‑90 (MQ=255)
gTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGtgaat > 1:2523899/1‑90 (MQ=255)
gTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGtgaat > 1:2473088/1‑90 (MQ=255)
gTTCTTGTTCCAGGTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCCCGCACCAGCGTTGCGCGCCCTTTCGGtgaat > 1:2650232/1‑90 (MQ=255)
ttCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGtgaatg < 2:1900659/90‑1 (MQ=255)
tGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATc < 1:1101371/90‑1 (MQ=255)
tGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATc < 2:2502758/90‑1 (MQ=255)
gTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATcc < 2:855860/90‑1 (MQ=255)
gTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATcc > 2:107878/1‑90 (MQ=255)
tCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCgg > 2:75617/1‑90 (MQ=255)
cAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGtt > 2:885493/1‑90 (MQ=255)
cAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGtt > 2:2337328/1‑90 (MQ=255)
cAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGtt > 1:2395868/1‑90 (MQ=255)
cAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGtt > 2:2943201/1‑90 (MQ=255)
cAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGtt > 2:852435/1‑90 (MQ=255)
aGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTc < 1:2745227/90‑1 (MQ=255)
aGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTc > 1:668331/1‑90 (MQ=255)
tttGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTg < 2:2523899/90‑1 (MQ=255)
tttGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTg < 2:1079367/90‑1 (MQ=255)
gAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGt > 1:1635056/1‑90 (MQ=255)
gTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGa < 2:2287996/90‑1 (MQ=255)
ggATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATc > 2:873906/1‑90 (MQ=255)
gATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTc < 1:1330135/80‑1 (MQ=255)
gATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTc > 2:1330135/1‑80 (MQ=255)
tCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTc < 2:335196/90‑1 (MQ=255)
aaCGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCAt < 1:1029993/90‑1 (MQ=255)
aCGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATc > 1:2972339/1‑90 (MQ=255)
aCGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGGGAATGAATCCGGTTCTGGGTGATCTTCATc > 1:2215672/1‑90 (MQ=255)
cgccgcGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCg < 1:1129344/90‑1 (MQ=255)
gccgcGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGa < 1:542940/90‑1 (MQ=255)
gcgATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTgcgcgc > 2:1596159/1‑46 (MQ=255)
gcgATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTgcgcgc < 1:1596159/46‑1 (MQ=255)
gcgATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACgg > 1:749319/1‑90 (MQ=255)
gcgATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACgg > 1:722963/1‑90 (MQ=255)
gcgATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACgg > 2:524145/1‑90 (MQ=255)
gcgATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACgg > 1:1532391/1‑90 (MQ=255)
gcgATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACgg > 2:1999387/1‑90 (MQ=255)
gATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGac < 2:1864876/90‑1 (MQ=255)
gATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGac < 1:622959/90‑1 (MQ=255)
gATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGac < 1:2738244/90‑1 (MQ=255)
gATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGac < 2:2002515/90‑1 (MQ=255)
cGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACAt < 1:1630544/90‑1 (MQ=255)
cGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACAt < 2:2648168/90‑1 (MQ=255)
gCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATc < 2:1949229/90‑1 (MQ=255)
gCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATc < 1:614741/90‑1 (MQ=255)
gCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATc < 1:885493/90‑1 (MQ=255)
caacaaCCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCgg < 2:2695407/90‑1 (MQ=255)
acaaCCGCAGCCATTCACGCACCAGCGATGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGAc < 1:740264/90‑1 (MQ=255)
|
GGGCAATTAACGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAAACGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGAC > NZ_CP009273/1761001‑1761171
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCTATTGCGCGTGCGGGCAATTAACGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAAACGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACTACGGGCATC > NZ_CP009273/1760987‑1761181
|
GCTATTGCGCGTGCGGGCAATTAACGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAAC < SRR3722030.595575/100‑1 (MQ=60)
GCTATTGCGCGTGCGGGCAATTAACGTCCGCAAACGGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAAC < SRR3722030.2249307/100‑1 (MQ=60)
CAATTAACGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCAC < SRR3722030.2539262/100‑1 (MQ=60)
CAATTAACGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCAC > SRR3722030.1211201/1‑100 (MQ=60)
CAATTAACGTCCGCAAACTGACGCCGGATTCAGGCAATTCTTGTTCCAGTTTGATTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCAC > SRR3722030.2479909/1‑100 (MQ=60)
ATTAACGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCA > SRR3722030.2507859/1‑100 (MQ=60)
TTAACGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAG < SRR3722030.1947333/100‑1 (MQ=60)
TAACGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGC < SRR3722030.156417/100‑1 (MQ=60)
ACGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGT < SRR3722030.2323793/100‑1 (MQ=60)
ACGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGT < SRR3722030.717496/100‑1 (MQ=60)
CGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTctgtctcttatacac > SRR3722030.548296/1‑85 (MQ=60)
CGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTctgtctcttatacac > SRR3722030.2318911/1‑85 (MQ=60)
CGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGG < SRR3722030.2877502/100‑1 (MQ=60)
CGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGG < SRR3722030.2019258/100‑1 (MQ=60)
CGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGG > SRR3722030.2820421/1‑100 (MQ=60)
CGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGG < SRR3722030.317798/100‑1 (MQ=60)
CGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGG < SRR3722030.763995/100‑1 (MQ=60)
CGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGG > SRR3722030.1133130/1‑100 (MQ=60)
gtcgtcggcagcgtcagatgtgtataagagacaGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTG < SRR3722030.1622050/67‑1 (MQ=60)
CCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTG < SRR3722030.390596/100‑1 (MQ=60)
CCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTG < SRR3722030.781388/100‑1 (MQ=60)
CCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTG < SRR3722030.887818/100‑1 (MQ=60)
GATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAAT > SRR3722030.2573818/1‑100 (MQ=60)
GATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAAT > SRR3722030.1095518/1‑100 (MQ=60)
GATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAAT > SRR3722030.2570103/1‑100 (MQ=60)
GATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAAT > SRR3722030.2518267/1‑100 (MQ=60)
GATTCAGGCAGTTCTTGTTCCAGGTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCCCGCACCAGCGTTGCGCGCCCTTTCGGTGAAT > SRR3722030.2699034/1‑100 (MQ=60)
ATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATG < SRR3722030.1473166/100‑1 (MQ=60)
ATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATG < SRR3722030.1652550/100‑1 (MQ=60)
AGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCActgtctcttatacacatctgacgctgccgacgacatggcc > SRR3722030.1359662/1‑60 (MQ=60)
GTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTT > SRR3722030.2439512/1‑100 (MQ=60)
TTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTC > SRR3722030.678692/1‑100 (MQ=60)
TGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGG < SRR3722030.1117812/100‑1 (MQ=60)
GTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGT > SRR3722030.1661593/1‑100 (MQ=60)
AGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCT < SRR3722030.2795919/100‑1 (MQ=60)
AGTTTGAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCT < SRR3722030.1350599/100‑1 (MQ=60)
GAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATC > SRR3722030.3027113/1‑100 (MQ=60)
GAGTGGATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGGGAATGAATCCGGTTCTGGGTGATCTTCATC > SRR3722030.2255553/1‑100 (MQ=60)
GATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGG > SRR3722030.760854/1‑100 (MQ=60)
GATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGG > SRR3722030.734115/1‑100 (MQ=60)
GATCAACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGG > SRR3722030.1557129/1‑100 (MQ=60)
AACGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACAC < SRR3722030.1045525/100‑1 (MQ=60)
CGCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACAT < SRR3722030.1146185/100‑1 (MQ=60)
GCCGCGATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATC < SRR3722030.551331/100‑1 (MQ=60)
GATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACT < SRR3722030.632619/100‑1 (MQ=60)
GATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACT < SRR3722030.2788818/100‑1 (MQ=60)
ATCCGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGctgtctcttatacacatctgacgctgccgacgacatggccagtgtagat > SRR3722030.2799853/1‑51 (MQ=60)
CGCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACTACGG < SRR3722030.1657009/100‑1 (MQ=60)
GCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACTACctg > SRR3722030.2441159/1‑97 (MQ=60)
GCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACTACGGG < SRR3722030.899069/100‑1 (MQ=60)
GCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACTACGGG < SRR3722030.624262/100‑1 (MQ=60)
GCCAACAACCGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGGGATCTTCATCGACGGACACATCGGACTACGGG > SRR3722030.1779724/1‑100 (MQ=60)
ACAACCGCAGCCATTCACGCACCAGCGATGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACTACGGGCATC < SRR3722030.751674/100‑1 (MQ=60)
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GCTATTGCGCGTGCGGGCAATTAACGTCCGCAAACTGACGCCGGATTCAGGCAGTTCTTGTTCCAGTTTGAGTGGATCAACGCCGCGATCCGCCAACAAACGCAGCCATTCACGCACCAGCGTTGCGCGCCCTTTCGGTGAATGAATCCGGTTCTGGGTGATCTTCATCGACGGACACATCGGACTACGGGCATC > NZ_CP009273/1760987‑1761181
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
