Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F3 I160 R1
|
220 |
104.1 |
6051714 |
95.9% |
5803593 |
84.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
3,934,995 |
+C |
intergenic (‑308/‑173) |
yieP ← / → BW25113_RS19520 |
FadR/GntR family transcriptional regulator/16S ribosomal RNA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 3,934,991 | 1 | . | C | 96.7%
| 326.8
/ 2.0
| 92 | intergenic (‑304/‑177) | yieP/BW25113_RS19520 | FadR/GntR family transcriptional regulator/16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base . (1/2); new base C (49/40); total (50/42) |
| Fisher's exact test for biased strand distribution p-value = 5.90e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CA‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGAT > NZ_CP009273/3934902‑3935075
|
ccgccgGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGca‑ca > 2:2910153/1‑90 (MQ=33)
gggTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CA‑ccccc > 1:6462/1‑89 (MQ=18)
aGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGcgcc > 2:981191/1‑90 (MQ=255)
aGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGcgcc > 1:598761/1‑90 (MQ=255)
ggggTTCTCCTGAGAACTCCGGCAGAGAAAGCAGAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCt < 1:646763/90‑1 (MQ=11)
ggggTTCTCCTGAGAACTACGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTGGCGGGAAAGCGTATTATGCA‑CACCCCCCCGCCGCt < 1:2699355/90‑1 (MQ=11)
gTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTgag > 1:384049/1‑90 (MQ=255)
gTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTgag > 1:2451229/1‑90 (MQ=255)
tGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAaaagc < 1:971154/90‑1 (MQ=255)
tGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAaaagc < 1:2439398/90‑1 (MQ=255)
gagaACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAaaagca > 1:893594/1‑90 (MQ=255)
gagaACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAaaagca > 1:2375898/1‑90 (MQ=255)
gaACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAaaagcaaa > 2:1910774/1‑90 (MQ=255)
gaACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAaaagcaaa > 2:1406528/1‑90 (MQ=255)
gaACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAaaagcaaa > 2:2516079/1‑90 (MQ=255)
gaACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAaaagcaaa > 2:2777866/1‑90 (MQ=255)
gaACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAaaagcaaa > 1:256821/1‑90 (MQ=255)
gaACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAaaagcaaa > 2:2777867/1‑90 (MQ=255)
gaACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAaaagcaaa > 2:1564347/1‑90 (MQ=255)
gaACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAaaagcaaa > 1:2148922/1‑90 (MQ=255)
gaACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAaaagcaaa < 1:2085889/90‑1 (MQ=255)
gaACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CA‑CCCCGCGCCGCTGAGAAaaagcaaag > 1:2757934/1‑90 (MQ=38)
aCTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAaaagcaaagc > 2:1848478/1‑90 (MQ=255)
aCTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAaaagcaaagc < 1:20884/90‑1 (MQ=255)
cTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCg > 2:1305099/1‑90 (MQ=255)
cTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCg > 2:651167/1‑90 (MQ=255)
cTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCg > 1:874197/1‑90 (MQ=255)
cTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCg > 1:1971813/1‑90 (MQ=255)
ccGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCt > 2:1006564/1‑72 (MQ=255)
ccGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCt < 1:1006564/72‑1 (MQ=255)
ccGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGc > 2:2347914/1‑90 (MQ=255)
ccGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGc > 1:639893/1‑90 (MQ=255)
ccGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGc > 2:88894/1‑90 (MQ=255)
ccGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGc > 1:1485406/1‑90 (MQ=255)
gCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACt < 1:634137/90‑1 (MQ=255)
gCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACt < 1:1848478/90‑1 (MQ=255)
gCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACt < 2:2018294/90‑1 (MQ=255)
agagAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGc < 2:2668352/90‑1 (MQ=255)
agagAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGc < 2:1633326/90‑1 (MQ=255)
gagaAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGct < 1:88894/90‑1 (MQ=255)
gaAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGctct > 1:1877695/1‑90 (MQ=255)
gaAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGctct > 1:698545/1‑90 (MQ=255)
aaGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCttt > 2:2134643/1‑90 (MQ=255)
cAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAAc < 2:3010825/90‑1 (MQ=255)
aaaaTAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACCC‑CCCCGCGCCGCTGAGATAAAGCAAAGCGGCACTGCTCTTTAACaa < 2:2900866/90‑1 (MQ=11)
aaaaTAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACaa < 2:384049/90‑1 (MQ=255)
aaaaTAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACaa < 1:2140060/90‑1 (MQ=255)
aaaaTAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACaa < 2:13687/90‑1 (MQ=255)
ataaatGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAAttt > 2:306548/1‑90 (MQ=255)
aatGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATc < 1:2239401/90‑1 (MQ=255)
tGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAg < 2:2148922/90‑1 (MQ=255)
tGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAg < 2:1109729/90‑1 (MQ=255)
tGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAg < 1:1910774/90‑1 (MQ=255)
cTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGAc < 1:2652006/90‑1 (MQ=255)
cTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGAc < 2:518963/90‑1 (MQ=255)
tGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACaa < 2:639893/90‑1 (MQ=255)
tGACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACaa < 1:981191/90‑1 (MQ=255)
gACTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAAt > 1:224965/1‑90 (MQ=255)
aCTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATc < 2:1476156/90‑1 (MQ=255)
aCTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATc < 2:2451229/90‑1 (MQ=255)
aCTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATc < 2:2554150/90‑1 (MQ=255)
aCTCTGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATc < 2:519709/90‑1 (MQ=255)
ctctGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCt < 2:2365567/90‑1 (MQ=255)
ctGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATc > 1:2387514/1‑87 (MQ=255)
ctGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATc < 2:2387514/87‑1 (MQ=255)
ctGTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCtgt > 1:1392454/1‑90 (MQ=255)
gTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCtgtgt > 2:1945330/1‑90 (MQ=255)
gTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCtgtgt > 2:2729482/1‑90 (MQ=255)
gTAGCGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCtgtgt > 2:2342977/1‑90 (MQ=255)
cGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGc < 2:1997021/90‑1 (MQ=255)
cGGGAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGc < 1:701280/90‑1 (MQ=255)
cGGGAAAGCGTATTATGCA‑CACCCCCCCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGc < 2:1971813/90‑1 (MQ=11)
gggAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCa > 2:2996772/1‑90 (MQ=255)
gggAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCa > 1:1042282/1‑90 (MQ=255)
gggAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCa > 2:1216787/1‑90 (MQ=255)
gggAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCa > 2:1800199/1‑90 (MQ=255)
gggAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCa > 1:877386/1‑90 (MQ=255)
ggAAAGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCAc < 1:350693/90‑1 (MQ=255)
aaaGCGTATTATGCA‑CACCCCCGCGCCGCTGGGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTc > 2:2258396/1‑90 (MQ=11)
aaaGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTc > 1:448228/1‑90 (MQ=255)
aaaGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTc > 2:748143/1‑90 (MQ=255)
aaaGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTc > 1:1462736/1‑90 (MQ=255)
aaaGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTc > 2:2251388/1‑90 (MQ=255)
aaGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCg < 2:1090929/90‑1 (MQ=255)
aGCGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGa > 2:2617655/1‑90 (MQ=255)
cGTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAg < 1:25145/90‑1 (MQ=255)
gTATTATGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTTGGCACTCGAAGa > 1:1796324/1‑90 (MQ=11)
tattatGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGAt < 1:2342977/90‑1 (MQ=255)
attatGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATa > 1:609751/1‑90 (MQ=255)
ttatGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATAc < 2:1744530/90‑1 (MQ=255)
ttatGCA‑CA‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACg < 1:518099/90‑1 (MQ=33)
tatGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACg > 2:1947203/1‑90 (MQ=255)
tatGCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACg < 1:306548/90‑1 (MQ=255)
gCA‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGAt > 2:2268550/1‑90 (MQ=255)
|
CCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑CA‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGAT > NZ_CP009273/3934902‑3935075
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CA‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAG > NZ_CP009273/3934897‑3935090
|
ACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CA‑CCCCC > SRR3722030.6564/1‑100 (MQ=8)
gtcagatgtgtataagagacagCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGC < SRR3722030.1418985/78‑1 (MQ=9)
cagatgtgtataagagacagCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGC < SRR3722030.2671886/80‑1 (MQ=8)
GCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGC < SRR3722030.3037737/100‑1 (MQ=7)
GCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGC < SRR3722030.2392041/100‑1 (MQ=7)
GCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGC < SRR3722030.2538786/100‑1 (MQ=7)
CCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCC > SRR3722030.608033/1‑100 (MQ=7)
GGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAG > SRR3722030.389800/1‑100 (MQ=7)
GGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAG > SRR3722030.2495998/1‑100 (MQ=7)
cggagtGGTTCTTCTGAGAACTCCGGCAGAGAAAGCAAAACTAAATGCTTGGCTCTGTAGCGGGAAAGCCAATTATGCAATC‑‑CCCCGCGCCGCTGAGAAA < SRR3722030.818961/94‑1 (MQ=4)
agagacagCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGC < SRR3722030.1021791/92‑1 (MQ=7)
GGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAGAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGC < SRR3722030.656791/100‑1 (MQ=6)
GGGGTTCTCCTGAGAACTACGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTGGCGGGAAAGCGTATTATGCA‑‑CACCCCCCCGCCGCTGAGAAAAAGC < SRR3722030.2749197/100‑1 (MQ=6)
GGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCA > SRR3722030.2419103/1‑100 (MQ=9)
GGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCA > SRR3722030.907307/1‑100 (MQ=9)
GTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAA > SRR3722030.260528/1‑100 (MQ=19)
GTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAA > SRR3722030.2187361/1‑100 (MQ=19)
GTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CA‑CCCCGCGCCGCTGAGAAAAAGCAAAG > SRR3722030.2808873/1‑100 (MQ=23)
CTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCG > SRR3722030.2006342/1‑100 (MQ=24)
CTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCG > SRR3722030.887608/1‑100 (MQ=24)
CCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGC > SRR3722030.649824/1‑100 (MQ=24)
CCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGC > SRR3722030.1509189/1‑100 (MQ=24)
TGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCAC < SRR3722030.985952/100‑1 (MQ=24)
TGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCAC < SRR3722030.2483897/100‑1 (MQ=24)
GAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGC < SRR3722030.2122985/100‑1 (MQ=24)
gatctacactggccatgtcgtcggcagcgtcagatgtgtataagagacagGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTC < SRR3722030.473617/50‑1 (MQ=10)
gagatctacactggccatgtcgtcggcagcgtcagatgtgtataagagacagATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTC < SRR3722030.2915501/48‑1 (MQ=20)
ACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTC < SRR3722030.21225/100‑1 (MQ=24)
CTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCT > SRR3722030.1909956/1‑100 (MQ=24)
CTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCT > SRR3722030.709349/1‑100 (MQ=24)
GCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAAC < SRR3722030.643983/100‑1 (MQ=24)
GCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAAC < SRR3722030.1879993/100‑1 (MQ=24)
GAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAAT < SRR3722030.90223/100‑1 (MQ=24)
AAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGAC < SRR3722030.2178331/100‑1 (MQ=24)
cactggccatgtcgtcggcagcgtcagatgtgtataagagacagcCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGAC < SRR3722030.2534160/55‑1 (MQ=11)
ATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAAT > SRR3722030.228177/1‑100 (MQ=24)
AATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTG < SRR3722030.2279807/100‑1 (MQ=24)
ATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGT > SRR3722030.2430943/1‑100 (MQ=24)
ATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGT > SRR3722030.1414340/1‑100 (MQ=24)
ATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CA‑CCCCcgcctgtctcttatacacatctgacgctgccgacgacatggccagtgtagatctcggtg > SRR3722030.529260/1‑41 (MQ=24)
atgtcgtcggcagcgtcagatgtgtataagagacagcacCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTG < SRR3722030.945457/61‑1 (MQ=10)
TGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTG < SRR3722030.1943854/100‑1 (MQ=24)
CTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTG < SRR3722030.2700833/100‑1 (MQ=24)
gtcgtcggcagcgtcagatgtgtataagagacagcCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTG < SRR3722030.446583/65‑1 (MQ=10)
TGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGG < SRR3722030.996112/100‑1 (MQ=24)
ACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCA > SRR3722030.1057979/1‑100 (MQ=24)
ACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCA > SRR3722030.890844/1‑100 (MQ=24)
CTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTC > SRR3722030.455041/1‑100 (MQ=24)
CTGTAGCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTC > SRR3722030.1486054/1‑100 (MQ=24)
GCGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTTGGCACTCGAAGA > SRR3722030.1826539/1‑100 (MQ=23)
CGGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGAT < SRR3722030.712120/100‑1 (MQ=24)
GGGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATA > SRR3722030.619204/1‑100 (MQ=24)
tgtataagagacagatgcacacCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGAT < SRR3722030.1453041/78‑1 (MQ=8)
GGAAAGCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATAC < SRR3722030.355889/100‑1 (MQ=24)
agGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATT < SRR3722030.2163197/98‑1 (MQ=6)
GCGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATT > SRR3722030.1275917/1‑100 (MQ=6)
agagacagatgcacacCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGAT < SRR3722030.671734/84‑1 (MQ=8)
CGTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTC < SRR3722030.25546/100‑1 (MQ=6)
GTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGctgtctcttatacacatctgacgctgccgacgac > SRR3722030.2413322/1‑66 (MQ=8)
GTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCT > SRR3722030.1317728/1‑100 (MQ=6)
GTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCT > SRR3722030.2429758/1‑100 (MQ=6)
GTATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGGGGGCACTCGAAGATACGGATTCT > SRR3722030.2475412/1‑100 (MQ=5)
TATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTT < SRR3722030.2385560/100‑1 (MQ=6)
ATTATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACctgtctcttatacacatctgacgctgccgaccacatggccagtgta > SRR3722030.3038091/1‑54 (MQ=9)
TTATGCA‑‑CA‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAAC < SRR3722030.526057/100‑1 (MQ=7)
TATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAAC < SRR3722030.311012/100‑1 (MQ=6)
ATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACG > SRR3722030.2147837/1‑100 (MQ=6)
ATGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACG > SRR3722030.315556/1‑100 (MQ=6)
TGCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGT < SRR3722030.305771/100‑1 (MQ=6)
GCA‑‑CACCCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTC > SRR3722030.2910738/1‑100 (MQ=6)
CA‑‑C‑‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCA > SRR3722030.2881236/1‑100 (MQ=6)
C‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAG > SRR3722030.2046521/1‑100 (MQ=7)
C‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAG > SRR3722030.2937868/1‑100 (MQ=7)
C‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAG > SRR3722030.1647576/1‑100 (MQ=7)
C‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAG > SRR3722030.1225057/1‑100 (MQ=7)
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ACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCA‑‑CA‑CCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTCGCAAG > NZ_CP009273/3934897‑3935090
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
