Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F3 I160 R1 220 104.1 6051714 95.9% 5803593 84.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP009273 4,087,693 T→C F10F (TTT→TTC rhaS → HTH‑type transcriptional activator RhaS

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092734,087,6930TC100.0% 527.6 / NA 138F10F (TTT→TTCrhaSHTH‑type transcriptional activator RhaS
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (110/28);  total (110/28)

Only 100 of 140 total aligned reads displayed.

TAAGAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTTCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAATT  >  NZ_CP009273/4087607‑4087777
                                                                                      |                                                                                    
tAAGAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCg                                                                                   <  2:2957688/90‑1 (MQ=255)
  aGAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTc                                                                                 >  1:1233612/1‑90 (MQ=255)
   gAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCt                                                                                >  2:2072407/1‑90 (MQ=255)
        tGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTaa                                                                           >  1:1829635/1‑90 (MQ=255)
         gACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAAc                                                                          >  1:234351/1‑90 (MQ=255)
         gACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAAc                                                                          >  1:1211140/1‑90 (MQ=255)
         gACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAAc                                                                          >  2:188068/1‑90 (MQ=255)
             tCGTTATTTCTATTTCGCCGGGTTGACGGCATCAGGAGGCCAGTATGACCGTATTTCATAGTGTGGATTTTTTCCCGTCTGGTAACGCGt                                                                      <  2:1145344/90‑1 (MQ=255)
             tCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAAc                                                                          <  2:959731/86‑1 (MQ=255)
             tCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAAc                                                                          >  1:959731/1‑86 (MQ=255)
             tCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGt                                                                      >  2:2026264/1‑90 (MQ=255)
             tCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGt                                                                      >  1:531789/1‑90 (MQ=255)
             tCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGt                                                                      >  1:250234/1‑90 (MQ=255)
               gTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTcc                                                                    >  2:2236877/1‑90 (MQ=255)
                tGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCg                                                                   <  1:944146/90‑1 (MQ=255)
                tGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCg                                                                   >  2:2340369/1‑90 (MQ=255)
                tGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCg                                                                   >  2:1061792/1‑90 (MQ=255)
                  aTTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTg                                                                 <  1:1022547/90‑1 (MQ=255)
                        aTTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATa                                                           >  2:2575955/1‑90 (MQ=255)
                        aTTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATa                                                           >  2:2220358/1‑90 (MQ=255)
                        aTTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATa                                                           >  1:374086/1‑90 (MQ=255)
                          ttCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGa                                                         <  1:2975207/90‑1 (MQ=255)
                                gtgtTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCg                                                   >  2:2306583/1‑90 (MQ=255)
                                  gtTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGc                                                 <  1:2790089/90‑1 (MQ=255)
                                  gtTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGc                                                 >  2:2427290/1‑90 (MQ=255)
                                       cgacATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCg                                            >  2:810254/1‑90 (MQ=255)
                                            tCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGc                                       >  2:1167238/1‑90 (MQ=255)
                                            tCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGc                                       >  1:268459/1‑90 (MQ=255)
                                               ggaggCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGa                                    >  1:1184547/1‑90 (MQ=255)
                                                gaggCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGAt                                   <  1:1849364/90‑1 (MQ=255)
                                                gaggCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGAt                                   <  2:1555713/90‑1 (MQ=255)
                                                gaggCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGAt                                   <  1:822476/90‑1 (MQ=255)
                                                 aggCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGAtt                                  <  1:19615/90‑1 (MQ=255)
                                                   gCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGAtttt                                >  2:477009/1‑90 (MQ=255)
                                                       gTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGAt                                                            >  2:1402720/1‑58 (MQ=255)
                                                       gTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGAt                                                            <  1:1402720/58‑1 (MQ=255)
                                                       gTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTg                            >  1:1239746/1‑90 (MQ=255)
                                                       gTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTg                            >  2:908721/1‑90 (MQ=255)
                                                          tGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAc                         <  1:2706286/90‑1 (MQ=255)
                                                           gACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAca                        <  2:951422/90‑1 (MQ=255)
                                                            aCCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTATCGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcat                       >  1:1450644/1‑90 (MQ=255)
                                                            aCCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcat                       >  1:2604823/1‑90 (MQ=255)
                                                            aCCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcat                       >  2:687585/1‑90 (MQ=255)
                                                               gTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcatcat                    >  1:924063/1‑90 (MQ=255)
                                                               gTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcatcat                    >  1:1105427/1‑90 (MQ=255)
                                                               gTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcatcat                    >  2:2606082/1‑90 (MQ=255)
                                                               gTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcatcat                    >  2:480073/1‑90 (MQ=255)
                                                               gTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcatcat                    >  2:2728564/1‑90 (MQ=255)
                                                               gTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcatcat                    >  2:2164400/1‑90 (MQ=255)
                                                                 aTTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcatcatca                  >  2:1786366/1‑90 (MQ=255)
                                                                 aTTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcatcatca                  >  1:947192/1‑90 (MQ=255)
                                                                 aTTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcatcatca                  >  2:26151/1‑90 (MQ=255)
                                                                       tAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGAt                                   >  2:910060/1‑67 (MQ=255)
                                                                       tAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGAt                                   <  1:910060/67‑1 (MQ=255)
                                                                       tAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTg                            <  1:994240/74‑1 (MQ=255)
                                                                       tAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGAttt            >  1:1722309/1‑90 (MQ=255)
                                                                       tAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGAttt            >  2:1424346/1‑90 (MQ=255)
                                                                       tAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGAttt            >  1:1335557/1‑90 (MQ=255)
                                                                       tAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGAttt            >  2:1981663/1‑90 (MQ=255)
                                                                       tAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGAttt            >  2:1854024/1‑90 (MQ=255)
                                                                        aGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGAtttt           >  1:1612191/1‑90 (MQ=255)
                                                                        aGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGAtttt           >  2:2363875/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAAccc                                                     >  1:2184842/1‑47 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAAccc                                                     <  2:2184842/47‑1 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAca                        <  2:925002/76‑1 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:2861127/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:2929195/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:2761868/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:1067372/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:2735831/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:2717228/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:127148/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:1986018/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:2432055/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:163459/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:2565473/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:2650681/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:2788460/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:649582/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:1478986/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:978314/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:1002625/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:1014211/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:143864/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:2108653/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:1523045/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:1577361/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:1713620/1‑90 (MQ=255)
                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:1753230/1‑90 (MQ=255)
                                                                           gtgGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcatc                      >  1:2244780/1‑76 (MQ=255)
                                                                           gtgGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCAt        >  1:1708917/1‑90 (MQ=255)
                                                                           gtgGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCAt        >  1:1668576/1‑90 (MQ=255)
                                                                           gtgGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCAt        >  2:600509/1‑90 (MQ=255)
                                                                           gtgGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCAt        >  1:373095/1‑90 (MQ=255)
                                                                           gtgGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCAt        >  2:2462499/1‑90 (MQ=255)
                                                                           gtgGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCAt        >  2:1487435/1‑90 (MQ=255)
                                                                              gATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAc                         <  2:199588/70‑1 (MQ=255)
                                                                              gATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAc                         >  1:199588/1‑70 (MQ=255)
                                                                                 tttttcCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAAtt  >  2:1940533/1‑90 (MQ=255)
                                                                                 tttttcCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAAtt  >  2:146656/1‑90 (MQ=255)
                                                                                      |                                                                                    
TAAGAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTTCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAATT  >  NZ_CP009273/4087607‑4087777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GAAAATTTAAGGTAAGAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTTCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAATTGTGATTGTCGAACAT  >  NZ_CP009273/4087595‑4087792
                                                                                                  |                                                                                                   
GAAAATTTAAGGTAAGAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCC                                                                                                    <  SRR3722030.676870/100‑1 (MQ=60)
    ATTTAAGGTAAGAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTC                                                                                                >  SRR3722030.1251781/1‑100 (MQ=60)
          GGTAAGAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAA                                                                                          >  SRR3722030.1860685/1‑100 (MQ=60)
          GGTAAGAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAA                                                                                          <  SRR3722030.1072643/100‑1 (MQ=60)
           GTAAGAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAAC                                                                                         >  SRR3722030.237703/1‑100 (MQ=60)
           GTAAGAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAAC                                                                                         >  SRR3722030.1229038/1‑100 (MQ=60)
               GAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACtgtc                                                                                     >  SRR3722030.2801119/1‑96 (MQ=60)
               GAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGT                                                                                     >  SRR3722030.974357/1‑100 (MQ=60)
               GAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGT                                                                                     >  SRR3722030.253850/1‑100 (MQ=60)
               GAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGT                                                                                     >  SRR3722030.539982/1‑100 (MQ=60)
                 ACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCC                                                                                   >  SRR3722030.404808/1‑100 (MQ=60)
                   CTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGT                                                                                 <  SRR3722030.2087009/100‑1 (MQ=60)
                     GACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGG                                                                               <  SRR3722030.1245778/100‑1 (MQ=60)
                          CGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATA                                                                          >  SRR3722030.379669/1‑100 (MQ=60)
                            TGATTGCTATTTCGTCGTGTTTATGCCCTCAGGGGGCTAGTCTGACCGTATTAAATAGTGTGTATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGA                                                                        <  SRR3722030.1449969/100‑1 (MQ=38)
                            TGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGA                                                                        <  SRR3722030.958568/100‑1 (MQ=60)
                             GATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAA                                                                       >  SRR3722030.3015998/1‑100 (MQ=60)
                              ATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAAC                                                                      <  SRR3722030.1037985/100‑1 (MQ=60)
                                   gtcagatgtgtataagagacagCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGG                                                                 <  SRR3722030.1424815/78‑1 (MQ=60)
                                      TTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTC                                                              <  SRR3722030.3030022/100‑1 (MQ=60)
                                              GTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGC                                                      <  SRR3722030.2841612/100‑1 (MQ=60)
                                              GTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGC                                                      >  SRR3722030.965941/1‑100 (MQ=60)
                                              GTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGC                                                      >  SRR3722030.272350/1‑100 (MQ=60)
                                                 GACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGA                                                   >  SRR3722030.1319385/1‑100 (MQ=60)
                                                 GACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGA                                                   >  SRR3722030.1202102/1‑100 (MQ=60)
                                                   CGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGGGGCGGTAGAACCCCGGCTCCCCGAGGCGGATT                                                 >  SRR3722030.2684358/1‑100 (MQ=60)
                                                         CAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTG                                           >  SRR3722030.1258053/1‑100 (MQ=60)
                                                            gtataagagacagCCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAC                                        <  SRR3722030.924016/87‑1 (MQ=60)
                                                            GAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAC                                        <  SRR3722030.835108/100‑1 (MQ=60)
                                                            GAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAC                                        <  SRR3722030.1880900/100‑1 (MQ=60)
                                                             AGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACA                                       <  SRR3722030.19937/100‑1 (MQ=60)
                                                              GGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTATCGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACAT                                      >  SRR3722030.1473727/1‑100 (MQ=60)
                                                              GGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCtgtctcttatacacatctgacgctgccgacgacatggcca                                      >  SRR3722030.2780219/1‑60 (MQ=60)
                                                              GGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACAT                                      >  SRR3722030.2652662/1‑100 (MQ=60)
                                                                 CAGTATGACCGTATTCCATAGTGTGGTTTTTTTCCCGTCTGGTAACGAGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCAT                                   <  SRR3722030.1760857/100‑1 (MQ=60)
                                                                 CAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCAT                                   >  SRR3722030.938213/1‑100 (MQ=60)
                                                                 CAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCAT                                   >  SRR3722030.1121923/1‑100 (MQ=60)
                                                                   agacagCCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCA                                 <  SRR3722030.1009310/94‑1 (MQ=60)
                                                                   GTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCA                                 >  SRR3722030.961659/1‑100 (MQ=60)
                                                                      TGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGA                              <  SRR3722030.2756268/100‑1 (MQ=60)
                                                                         CCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTT                           >  SRR3722030.1750572/1‑100 (MQ=60)
                                                                         CCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTT                           >  SRR3722030.2610865/1‑100 (MQ=60)
                                                                         CCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTT                           >  SRR3722030.1356135/1‑100 (MQ=60)
                                                                          CGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTT                          >  SRR3722030.1638321/1‑100 (MQ=60)
                                                                           GTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCtgtctcttatacacatctgacgctgccgacgacatggccagtgtagatctcgg                         >  SRR3722030.1871573/1‑47 (MQ=60)
                                                                           GTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCctgtctcttatacacatctgacgctgccgacga                         >  SRR3722030.2224084/1‑67 (MQ=60)
                                                                           GTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATctgt                         >  SRR3722030.939173/1‑96 (MQ=60)
                                                                           GTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTC                         >  SRR3722030.128989/1‑100 (MQ=60)
                                                                           GTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTC                         >  SRR3722030.2839957/1‑100 (MQ=60)
                                                                           GTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTC                         >  SRR3722030.1083378/1‑100 (MQ=60)
                                                                           GTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTC                         >  SRR3722030.196420/1‑100 (MQ=60)
                                                                           GTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTC                         >  SRR3722030.145933/1‑100 (MQ=60)
                                                                           GTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTC                         >  SRR3722030.1502631/1‑100 (MQ=60)
                                                                           GTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTC                         >  SRR3722030.993206/1‑100 (MQ=60)
                                                                           GTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTC                         >  SRR3722030.1547958/1‑100 (MQ=60)
                                                                           GTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTC                         >  SRR3722030.2699488/1‑100 (MQ=60)
                                                                           GTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTC                         >  SRR3722030.165813/1‑100 (MQ=60)
                                                                           GTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTC                         >  SRR3722030.2612511/1‑100 (MQ=60)
                                                                           GTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTC                         >  SRR3722030.1667364/1‑100 (MQ=60)
                                                                           GTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTC                         >  SRR3722030.2476410/1‑100 (MQ=60)
                                                                           GTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTC                         >  SRR3722030.659647/1‑100 (MQ=60)
                                                                           GTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTC                         >  SRR3722030.2020865/1‑100 (MQ=60)
                                                                             ATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTctgt                       >  SRR3722030.2285302/1‑96 (MQ=60)
                                                                             ATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCAT                       >  SRR3722030.1736809/1‑100 (MQ=60)
                                                                             ATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCAT                       >  SRR3722030.101230/1‑100 (MQ=60)
                                                                             ATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCAT                       >  SRR3722030.1695666/1‑100 (MQ=60)
                                                                             ATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCAT                       >  SRR3722030.378662/1‑100 (MQ=60)
                                                                                ACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGActgtctctta                    >  SRR3722030.202437/1‑90 (MQ=60)
                                                                                ACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAA                    >  SRR3722030.2295834/1‑100 (MQ=60)
                                                                                ACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAA                    >  SRR3722030.765377/1‑100 (MQ=60)
                                                                                     GTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAATTGT               >  SRR3722030.558400/1‑100 (MQ=60)
                                                                                     GTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAATTGT               >  SRR3722030.2375708/1‑100 (MQ=60)
                                                                                     GTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAATTGT               >  SRR3722030.933325/1‑100 (MQ=60)
                                                                                     GTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAATTGT               >  SRR3722030.944211/1‑100 (MQ=60)
                                                                                     GTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAATTGT               >  SRR3722030.1544053/1‑100 (MQ=60)
                                                                                     GTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAATTGT               >  SRR3722030.144108/1‑100 (MQ=60)
                                                                                       GTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAATTGTGA             <  SRR3722030.1124231/100‑1 (MQ=60)
                                                                                          GATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAATTGTGATTG          >  SRR3722030.1014582/1‑100 (MQ=60)
                                                                                          GATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGAGTTTCATGAAGTTGTGATTG          >  SRR3722030.1726185/1‑100 (MQ=60)
                                                                                                TTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAATTGTGATTGTCGAAC    <  SRR3722030.875640/100‑1 (MQ=60)
                                                                                                TTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAATTGTGATTGTCGAAC    <  SRR3722030.2767432/100‑1 (MQ=60)
                                                                                                  CCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAATTGTGATTGTCGAACAT  <  SRR3722030.398859/100‑1 (MQ=60)
                                                                                                  |                                                                                                   
GAAAATTTAAGGTAAGAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTTCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAATTGTGATTGTCGAACAT  >  NZ_CP009273/4087595‑4087792

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: