Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F3 I160 R1
|
220 |
104.1 |
6051714 |
95.9% |
5803593 |
84.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
4,153,816 |
T→C |
S84P (TCA→CCA) |
btuB → |
TonB‑dependent vitamin B12 receptor BtuB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 4,153,816 | 0 | T | C | 98.9%
| 317.5
/ ‑4.0
| 91 | S84P (TCA→CCA) | btuB | TonB‑dependent vitamin B12 receptor BtuB |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (37/53); total (37/54) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.40e-01 |
GACCGCTGGCAGTCGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCTCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCGGGGGTGAGTGG > NZ_CP009273/4153729‑4153901
|
gACCGCTGGCAGTCGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCa < 2:364285/90‑1 (MQ=255)
ccGCTGGCAGTCGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATc < 2:630231/90‑1 (MQ=255)
cGCTGGCAGTCGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCt < 1:1088572/90‑1 (MQ=255)
cGCTGGCAGTCGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCt < 2:1368732/90‑1 (MQ=255)
cGCTGGCAGTCGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCt > 1:328887/1‑90 (MQ=255)
gCTGGCAGTCGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTa > 2:98532/1‑90 (MQ=255)
cGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTc < 2:898872/90‑1 (MQ=255)
cGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTc < 1:2418812/90‑1 (MQ=255)
cGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTc < 1:1146039/90‑1 (MQ=255)
gACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTTTTcg > 2:1463338/1‑90 (MQ=255)
gACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTcg < 1:1751464/90‑1 (MQ=255)
aCCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTcgc < 1:1799360/90‑1 (MQ=255)
aCCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTcgc < 2:1067401/90‑1 (MQ=255)
aCCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTcgc < 1:1267015/90‑1 (MQ=255)
aCCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTcgc < 1:1337009/90‑1 (MQ=255)
aCCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTcgc < 2:66225/90‑1 (MQ=255)
aCCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTcgc < 2:883818/90‑1 (MQ=255)
aCCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTcgc < 2:3010494/90‑1 (MQ=255)
ccTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTTGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTcgcg < 1:651938/90‑1 (MQ=255)
cTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCgg < 1:1770698/90‑1 (MQ=255)
cTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCgg < 2:854137/90‑1 (MQ=255)
cGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTTAGGTCCGCTCCCATCTATTTTTATTTGCGGTa > 2:2657686/1‑90 (MQ=255)
gTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCTCATCTATTTTTATTCGCGGTACa < 2:2926400/90‑1 (MQ=255)
gTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCCTCTATTTTTTTTCGCGGTACa > 2:2833801/1‑90 (MQ=255)
gTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGGTCTCGTCAGGTCCCATCTATTTTTATTTCCGGtgac > 2:1809395/1‑87 (MQ=255)
gTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGGTCAGGGCAGCCCCCCTCTTTTTTTTTTTTCGGGACa > 1:295117/1‑90 (MQ=255)
tCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACaa < 2:492521/90‑1 (MQ=255)
tCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACaa < 1:2597662/90‑1 (MQ=255)
aaTGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAAt < 2:237773/90‑1 (MQ=255)
atgatgTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGGCAGCTCCCCTCTATTTTTTTTTGCGGGACAAATg > 1:69768/1‑90 (MQ=255)
tgatgTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGc < 1:205577/90‑1 (MQ=255)
gatgTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGcc < 1:2809652/90‑1 (MQ=255)
gatgTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGcc < 2:23202/90‑1 (MQ=255)
gatgTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGcc < 2:99202/90‑1 (MQ=255)
gatgTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGcc < 2:111223/90‑1 (MQ=255)
gatgTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGcc < 2:1939580/90‑1 (MQ=255)
tgtgCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGGCAGCTCCCATCTTTTTTTTTTTGCGGGAAAAATGcccg > 1:244981/1‑88 (MQ=255)
gtgCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGt < 2:274079/90‑1 (MQ=255)
gtgCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGGTTTGGGCAGCTCCCATCTCTTTTTTTTCTCGGTACAAATGCCAGt > 1:1865823/1‑90 (MQ=255)
gtgCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGGTCAGGTCCGCTCCCCTCTATTTTTTTTCGCGGTACAAAAGCCCGt > 1:1833624/1‑90 (MQ=255)
gtgCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGGTCAGGGCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGt > 1:2899035/1‑90 (MQ=255)
gctgcGCCGTCTTCCGGGCGTCGATATCCCCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCa < 1:2806209/90‑1 (MQ=255)
gctgcGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCa < 1:1371177/90‑1 (MQ=255)
ctgcGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCAt < 2:328887/90‑1 (MQ=255)
ctgcGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGGCAGCTCCCCTCTATTTTTTTTTGCGGGACAAAAGCCAGTCAt > 1:1643495/1‑90 (MQ=255)
tgcGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCAtg < 1:2117739/90‑1 (MQ=255)
gcgcCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGGCAGCTCCCCTCTTTTTTTTTTTGCGGTACAAAAACCAGGCAggt > 1:1689742/1‑90 (MQ=255)
gcgcCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGGCAGCTCCCATCTATTTTTTTTTGCGGGACAAATGCCAGGCAtgt > 2:2004122/1‑90 (MQ=255)
gcgcCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGGCAGCTCCCATCTATTTTTATTCGCGGGACAAAAGCCAGTCAtgt > 2:1383302/1‑90 (MQ=255)
gcCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATgtgt < 1:2901800/90‑1 (MQ=255)
gcCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATgtgt < 2:934046/90‑1 (MQ=255)
cGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTg < 2:1304541/90‑1 (MQ=255)
gTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGGCAGCTCCCATCTATTTTTTTTTGCGGTACAAAAGCCAGTCATGTGtttg > 1:629124/1‑88 (MQ=255)
gTCTTCCGGGCGTCGATATCACCCAAAACGGCGGGTCAGGGCAGCTCCCATCTATTTTTTTTCGCGGGACAAATGCCAGTCATGTGTTgg > 1:16844/1‑90 (MQ=255)
cTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGGCAGCTCCCCTCTTTTTTTTTTTGCGGGACAAATGCCCGTCATGTGTTgggg > 1:1471010/1‑88 (MQ=255)
ccGGGCGTCGATATCACCCAAAACGGCGGTTCAGGGCAGCTCCCATCTTTTTTTATTCGCGGGACAAAAGCCAGTCATGGGTTGGGGTTa > 2:1816040/1‑90 (MQ=255)
gggCGTCGATATCACCCAAAACGGCGGTTCACGGCAGATCCCCAATCTTTTTTTTCGCGGAACAAAAGCCAGGCATGTGTTAGCGTTTAt > 1:2160146/1‑90 (MQ=255)
cGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCCTCTTTTTTTTTTTGCGGGACAAATGCCAGTCATGCGTTTGTGTTAATTGa > 1:2454668/1‑90 (MQ=255)
cGTCGATATCACCCAAAACGGCGGTTCAGGGCAGCCCCCATCTATTTTTTTTCGCGGGACAAATGCCAGTCATGTGTTGGGGTTTATTGa > 2:2026376/1‑90 (MQ=255)
gTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGAt < 2:1689742/90‑1 (MQ=255)
gTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGAt < 2:1591382/90‑1 (MQ=255)
gTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGAt < 1:2004122/90‑1 (MQ=255)
acagATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGAt < 2:2276385/87‑1 (MQ=255)
tCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTTTTCGCGGGAAAAAAGCCAGTCCTGTGTTGGGGTTTATTTATg > 1:1108233/1‑90 (MQ=255)
tatCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGt < 1:288629/90‑1 (MQ=255)
cccAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGcc < 2:12559/90‑1 (MQ=255)
aaaCGGCGGTTCAGGTCAGCTCCCATCTATTTTTTTTCGCGGGACAAAAGCCAGTCATGTGTTGGGGGTAATTGATGGCGTACGccctgt > 1:2276385/1‑86 (MQ=255)
aaaCGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGc > 1:1488660/1‑51 (MQ=255)
aaaCGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGc < 2:1488660/51‑1 (MQ=255)
aaaCGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGaa > 2:2448737/1‑90 (MQ=255)
aaaCGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGGGGTAATTGATGGCGTACGCCCGaa > 2:1706369/1‑90 (MQ=255)
aaaCGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGGACAAATGCCAGTCATGTGTTGGTGTTAATTTATGGCGTACGCCTGaa > 2:1629250/1‑90 (MQ=255)
aaaCGGCGGTTCAGGGCAGCTCCCATCTATTTTTATTCGCGGGACAAAAGCCAGTCATGTGTTGGGGTTAATTGATGGCGGACGCCTGaa > 1:746450/1‑90 (MQ=255)
gcggTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTgg < 2:2714999/90‑1 (MQ=255)
gcggTTCAGGGCAGCTCCCCTCTTTTTTTTTTCGCGGGACAAAAGCCAGTCATGTGTTGGGGTTTATTTATTGCGGTCGCCCGGATCttg > 1:300876/1‑88 (MQ=255)
gTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCgg < 2:905372/90‑1 (MQ=255)
caggtcaggtCCCATCTATTTTTTTTCGCGGTTCAAATTCCAGTCATGTTTTGGTGTTAAATGATGGCGTACGCCTGAAACTgggggggg < 1:2833801/90‑1 (MQ=255)
cAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCggggg < 2:1529893/90‑1 (MQ=255)
cAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCggggg < 1:1809395/90‑1 (MQ=255)
cAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCggggg < 2:2454668/90‑1 (MQ=255)
cAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCGGGGGTGAGt < 2:2899035/90‑1 (MQ=255)
cAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCGGGGGTGAGt < 2:1296226/90‑1 (MQ=255)
cAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCGGGGGTGAGt < 1:26471/90‑1 (MQ=255)
gCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGAt > 2:2303635/1‑58 (MQ=255)
gCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGAt < 1:2303635/58‑1 (MQ=255)
gCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGt < 1:2882015/63‑1 (MQ=255)
gCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGt > 2:2882015/1‑63 (MQ=255)
gCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCGGGGGTGAGTgg > 2:698481/1‑90 (MQ=255)
gCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCGGGGGTGAGTgg > 2:813743/1‑90 (MQ=255)
gCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCGGGGGTGAGTgg > 1:546615/1‑90 (MQ=255)
gCTCCCATCTATTTTTATTCGCGGGACAAATGCCAGTCATGTGTTGGTGGTAATTGATGGCGTACGCCTGAAGCTGGCGGGGGGGAGTgg > 2:2030931/1‑90 (MQ=255)
|
GACCGCTGGCAGTCGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCTCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCGGGGGTGAGTGG > NZ_CP009273/4153729‑4153901
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGGATATCGACCGCTGGCAGTCGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCTCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCGGGGGTGAGTGGTTCTGCCGAC > NZ_CP009273/4153721‑4153911
|
cggcgaccaccgagatctacactggccatgtcgtcggcagcgtcagatgtgtataagagacaGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATC < SRR3722030.730152/38‑1 (MQ=60)
AGGATATCGACCGCTGGCAGTCGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATC < SRR3722030.1314936/100‑1 (MQ=60)
GGATATCGACCGCTGGCAGTCGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGGTCAGGGCAGCTCCCATCT > SRR3722030.333713/1‑100 (MQ=60)
cgtcggcagcgtcagatgtgtataagagacagGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTAT < SRR3722030.1259068/68‑1 (MQ=60)
ATATCGACCGCTGGCAGTCGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTAT < SRR3722030.713098/100‑1 (MQ=60)
ATATCGACCGCTGGCAGTCGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTAT < SRR3722030.370015/100‑1 (MQ=60)
ggcagcgtcagatgtgtataagagacagATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTT < SRR3722030.2840625/72‑1 (MQ=60)
ATCGACCGCTGGCAGTCGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTT < SRR3722030.2185211/100‑1 (MQ=60)
TCGACCGCTGGCAGTCGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTT < SRR3722030.1700382/100‑1 (MQ=60)
CCGCTGGCAGTCGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGGCAGCTCCCCTCTATTTTTTTT > SRR3722030.1119528/1‑100 (MQ=60)
CGCTGGCAGTCGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTC < SRR3722030.1104847/100‑1 (MQ=60)
CGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAA < SRR3722030.2462911/100‑1 (MQ=60)
CGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAA < SRR3722030.1163105/100‑1 (MQ=60)
GACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAAC < SRR3722030.1780483/100‑1 (MQ=60)
ACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATG < SRR3722030.1829630/100‑1 (MQ=60)
ACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATG < SRR3722030.1357636/100‑1 (MQ=60)
ACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATG < SRR3722030.1285974/100‑1 (MQ=60)
ACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGGCAGCTCCCCTCTATTTTTTTTTGCGGGACAAATG > SRR3722030.70829/1‑100 (MQ=60)
CCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTTGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGC < SRR3722030.662031/100‑1 (MQ=60)
CTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCC < SRR3722030.1800224/100‑1 (MQ=60)
CGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGGCAGCTCCCATCTTTTTTTttttgcgggaaaaatgcccg > SRR3722030.248508/1‑80 (MQ=60)
GGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGGTTTGGGCAGCTCCCATCTCTTTTTTTTCTCGGTACAAATGCCAGT > SRR3722030.1897772/1‑100 (MQ=60)
GGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGGTCAGGTCCGCTCCCCTCTATTTTTTTTCGCGGTACAAAAGCCCGT > SRR3722030.1864781/1‑100 (MQ=60)
GGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGGTCAGGGCAGCTCCCATCTATTTTTATTCGCGGGACAAAAGCCAGT > SRR3722030.2952499/1‑100 (MQ=60)
TCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCA < SRR3722030.2645349/100‑1 (MQ=60)
CAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGGCAGCTCCCCTCTATTTTTTTTTGCGGGACAAAAGCCAGTCAT > SRR3722030.1670168/1‑100 (MQ=60)
ATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGGCAGCTCCCCTCTTTTTTTTTTTGCGGTACAAAaaccaggcaggt > SRR3722030.1717178/1‑88 (MQ=60)
TGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTG < SRR3722030.208505/100‑1 (MQ=60)
GGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGGCAGCTCCCCTCTATTTTTTTTTGCGGGACAAAAGCCAGTCATGTG > SRR3722030.968961/1‑100 (MQ=60)
GATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGT < SRR3722030.2861514/100‑1 (MQ=60)
GTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGGTCAGGTCAGCTCCCCTCTATTTTTTTTTCCGGTACAAAAGCCAGTCATGTGTctg > SRR3722030.2008197/1‑97 (MQ=60)
GTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGGTCAGGGCAGCTCCCATCTATTTTTTTTCGCGGGACAAATGCCAGTCATGTGTTGG > SRR3722030.17122/1‑100 (MQ=60)
GTGCCGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGGCAGCTCCCATCTATTTTTTTTTGCGGTACAAAAGCCAGTCATGTGTTTG > SRR3722030.638884/1‑100 (MQ=60)
GCTGCGCCGTCTTCCGGGCGTCGATATCCCCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTG < SRR3722030.2858003/100‑1 (MQ=60)
GCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTG < SRR3722030.1392609/100‑1 (MQ=60)
GCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGGCAGCTCCCCTCTTTTTTTTTTTGCGGGACAAATGCCCGTCATGTGTTGGGG > SRR3722030.1494481/1‑100 (MQ=60)
TGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTT < SRR3722030.2155523/100‑1 (MQ=60)
GCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAAT < SRR3722030.2955328/100‑1 (MQ=60)
gccatgtcgtcggcagcgtcagatgtgtataagagacagGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTG < SRR3722030.418736/61‑1 (MQ=60)
GTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCCTCTTTTTTTTTTTGCGGGACAAATGCCAGTCATGCGTTTGTGTTAATTGA > SRR3722030.2499497/1‑100 (MQ=60)
CTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTTTTCGCGGGAAAAAAGCCAGTCCTGTGTTGGGGTTTATTTATG > SRR3722030.1124776/1‑100 (MQ=60)
tgtcgtcggcagcgtcagatgtgtataagagacagGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGG < SRR3722030.416459/65‑1 (MQ=60)
gtcagatgtgtataagagacaGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCC < SRR3722030.2345385/79‑1 (MQ=60)
GTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCC < SRR3722030.2039387/100‑1 (MQ=60)
ATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTTTTCGCGGTACAAAAGCCAGTCATGTGctgtctcttatacacatctgacgctgccg > SRR3722030.1512502/1‑71 (MQ=60)
ATATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTTTTCGCGGGACAAAAGCCAGTCATGTGTTGGGGGTAATTGATGGCGTACGCCctgt > SRR3722030.2317589/1‑96 (MQ=60)
ATATCACCCAAAACGGCGGTTCAGGGCAGCTCCCATCTATTTTTATTCGCGGGACAAAAGCCAGTCATGTGTTGGGGTTAATTGATGGCGGACGCCTGAA > SRR3722030.757941/1‑100 (MQ=60)
atgtgtataagagacaGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAAT < SRR3722030.2935189/84‑1 (MQ=60)
TATCACCCAAAACGGCGGTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAAT < SRR3722030.292808/100‑1 (MQ=60)
ACCCAAAACGGCGGTTCAGGGCAGCTCCCCTCTTTTTTTTTTCGCGGGACAAAAGCCAGTCATGTGTTGGggtttatttattgcggtcgcccggatcttg > SRR3722030.305262/1‑70 (MQ=32)
GTTCAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCGGGGGTGAGTGG > SRR3722030.555077/1‑100 (MQ=60)
agGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCGGGGGTGAGTGGTTC < SRR3722030.354361/98‑1 (MQ=60)
CAGGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCGGGGGTGAGTGGTTC < SRR3722030.1839927/100‑1 (MQ=60)
GGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCGGGGGTGAGTGGTTCct > SRR3722030.2205901/1‑98 (MQ=60)
GGTCAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCGGGGGTGAGTGGTTCTG > SRR3722030.514118/1‑100 (MQ=60)
CAGCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCGGGGGTGAGTGGTTCTGCCG < SRR3722030.26880/100‑1 (MQ=60)
GCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCGGGGGTGAGTGGTTCTGCCGAC > SRR3722030.451734/1‑100 (MQ=60)
GCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCGGGGGTGAGTGGTTCTGCCGAC > SRR3722030.911205/1‑100 (MQ=60)
GCTCCCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCGGGGGTGAGTGGTTCTGCCGAC > SRR3722030.2677175/1‑100 (MQ=60)
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AGGATATCGACCGCTGGCAGTCGACCTCGGTCAATGATGTGCTGCGCCGTCTTCCGGGCGTCGATATCACCCAAAACGGCGGTTCAGGTCAGCTCTCATCTATTTTTATTCGCGGTACAAATGCCAGTCATGTGTTGGTGTTAATTGATGGCGTACGCCTGAATCTGGCGGGGGTGAGTGGTTCTGCCGAC > NZ_CP009273/4153721‑4153911
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
