Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F2 I204 R1
|
2 |
48.7 |
2644746 |
96.6% |
2554824 |
86.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
4,609,448 |
A→G |
D10G (GAC→GGC) |
deoB → |
phosphopentomutase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 4,609,448 | 0 | A | G | 97.3%
| 228.3
/ ‑1.2
| 73 | D10G (GAC→GGC) | deoB | phosphopentomutase |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (44/27); total (45/28) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.18e-01 |
GTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGACTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAGCTTG > NZ_CP009273/4609371‑4609532
|
gTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCAt > 2:97772/1‑90 (MQ=255)
tataCTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATc < 1:97772/90‑1 (MQ=255)
ataCTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCg > 2:428440/1‑90 (MQ=255)
aCTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGgc < 2:698503/90‑1 (MQ=255)
aCTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGgc < 2:509457/90‑1 (MQ=255)
gatctgatcATTTTAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCt > 2:752289/1‑90 (MQ=255)
gatctgatcATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGgcgc < 2:554117/89‑1 (MQ=255)
gatctgatcATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGgcgc > 1:554117/1‑89 (MQ=255)
gatctgatcATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGgc < 2:462517/87‑1 (MQ=255)
gatctgatcATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGgc > 1:462517/1‑87 (MQ=255)
gatctgatcATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCt > 1:1052259/1‑90 (MQ=255)
gatctgatcATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCt > 2:997572/1‑90 (MQ=255)
gatctgatcATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCt > 2:804278/1‑90 (MQ=255)
gatctgatcATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCt > 2:1162141/1‑90 (MQ=255)
gatctgatcATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCt > 1:95411/1‑90 (MQ=255)
gatctgatcATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCt > 1:426074/1‑90 (MQ=255)
gatctgatcATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCt > 1:1191485/1‑90 (MQ=255)
gatctgatcATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCt > 1:122633/1‑90 (MQ=255)
ctgatcATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACa > 2:474472/1‑90 (MQ=255)
gatcATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACaga > 2:1133219/1‑90 (MQ=255)
gatcATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACaga > 1:780312/1‑90 (MQ=255)
gatcATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACaga > 2:368711/1‑90 (MQ=255)
atcATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACagaa < 2:495740/90‑1 (MQ=255)
tttAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATg > 1:72407/1‑90 (MQ=255)
tttAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATg > 1:1286023/1‑90 (MQ=255)
aaaTTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAg < 1:908635/90‑1 (MQ=255)
gAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCt > 1:390620/1‑90 (MQ=255)
ggAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCggg < 1:1278715/90‑1 (MQ=255)
ggAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCggg < 2:1278387/90‑1 (MQ=255)
ggAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCggg < 2:126436/90‑1 (MQ=255)
gagaACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACagaa > 1:897588/1‑62 (MQ=255)
gagaACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACagaa < 2:897588/62‑1 (MQ=255)
gagaACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAGGATGCAGAACGCTTTGGTGACGTCgggg > 1:945991/1‑90 (MQ=255)
gaACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCt > 1:1042890/1‑90 (MQ=255)
aaCATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTg > 1:910538/1‑90 (MQ=255)
cATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGgcg < 1:7353/49‑1 (MQ=255)
cATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGgcg > 2:7353/1‑49 (MQ=255)
cATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCa < 1:144685/63‑1 (MQ=255)
cATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCa > 2:144685/1‑63 (MQ=255)
cATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGac < 1:1162141/90‑1 (MQ=255)
cATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGac > 2:166513/1‑90 (MQ=255)
cATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGac > 2:497239/1‑90 (MQ=255)
cATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGac > 1:1253038/1‑90 (MQ=255)
cATATGAAACGTGCATTTATTATGGTGCTGGACTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGac < 2:1280198/90‑1 (MQ=255)
cATATGAAACGTGCATTTATTATGGTGCTGGACTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGac > 1:1280198/1‑90 (MQ=255)
tatGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGgc > 2:1086092/1‑46 (MQ=255)
tatGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGgc < 1:1086092/46‑1 (MQ=255)
tatGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGacac > 1:657221/1‑90 (MQ=255)
atGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACAcc > 2:1270424/1‑90 (MQ=255)
tGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACAccc < 2:72507/90‑1 (MQ=255)
tGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACAccc < 1:166513/90‑1 (MQ=255)
tGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACAccc < 2:159556/90‑1 (MQ=255)
aaaCGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTg < 1:497239/90‑1 (MQ=255)
gTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTggtca > 2:212256/1‑87 (MQ=255)
gTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTggggc > 2:602667/1‑88 (MQ=255)
gTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTc > 2:283989/1‑90 (MQ=255)
gTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTc > 2:209564/1‑90 (MQ=255)
gTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTc > 2:168117/1‑90 (MQ=255)
gTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTc > 1:820878/1‑90 (MQ=255)
gTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTc > 1:885436/1‑90 (MQ=255)
gCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCat < 2:95411/90‑1 (MQ=255)
gCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCat < 2:1088454/90‑1 (MQ=255)
aTTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCatat < 2:910652/90‑1 (MQ=255)
ttatGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAg < 1:184144/90‑1 (MQ=255)
ttatGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAg < 1:564264/90‑1 (MQ=255)
ttatGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAg < 2:1191485/90‑1 (MQ=255)
tGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAg > 2:347184/1‑90 (MQ=255)
gTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAGCt > 1:737807/1‑90 (MQ=255)
tGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAGCtt > 1:555354/1‑90 (MQ=255)
tGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAGCtt < 1:428440/90‑1 (MQ=255)
gCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGac > 2:657655/1‑64 (MQ=255)
gCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGac < 1:657655/64‑1 (MQ=255)
gCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAGCTtg > 1:587755/1‑90 (MQ=255)
|
GTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGACTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAGCTTG > NZ_CP009273/4609371‑4609532
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGACTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAGCTTGTGCCAAAGGCGAAGC > NZ_CP009273/4609350‑4609547
|
TCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGC < SRR3722086.1253442/100‑1 (MQ=60)
ACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCT > SRR3722086.96365/1‑100 (MQ=60)
ACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCT > SRR3722086.1065801/1‑100 (MQ=60)
ACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCT > SRR3722086.559686/1‑100 (MQ=60)
ACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCT > SRR3722086.467258/1‑100 (MQ=60)
ACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCT > SRR3722086.430496/1‑100 (MQ=60)
ACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCT > SRR3722086.123838/1‑100 (MQ=60)
ACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCT > SRR3722086.1207041/1‑100 (MQ=60)
TATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAG < SRR3722086.98742/100‑1 (MQ=60)
ATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGA > SRR3722086.789259/1‑100 (MQ=60)
ATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGACctgtctcttatacacatctccga > SRR3722086.101061/1‑77 (MQ=60)
gtctcgtgggctcggagatgtgtataagagacagACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAG < SRR3722086.1100144/66‑1 (MQ=60)
tcgtgggctcggagatgtgtataagagacagGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGA < SRR3722086.7405/69‑1 (MQ=60)
GATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATG > SRR3722086.73121/1‑100 (MQ=60)
GATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATG > SRR3722086.1302846/1‑100 (MQ=60)
ATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCT > SRR3722086.394702/1‑100 (MQ=60)
atgtgtataagagacagGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTG < SRR3722086.146136/83‑1 (MQ=60)
AAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGG < SRR3722086.919947/100‑1 (MQ=60)
ACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAGGATGCAGAACGCTTTGGTGACGTCGGGG > SRR3722086.957970/1‑100 (MQ=60)
ACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACctgtctcttatacacatc > SRR3722086.908703/1‑82 (MQ=60)
TGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCT > SRR3722086.1056321/1‑100 (MQ=60)
GAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTG > SRR3722086.921886/1‑100 (MQ=60)
GTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGAC > SRR3722086.1269458/1‑100 (MQ=60)
GTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGACTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGAC > SRR3722086.1296953/1‑100 (MQ=60)
ACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACAC > SRR3722086.664480/1‑100 (MQ=60)
GGAGAACATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCC < SRR3722086.1295447/100‑1 (MQ=60)
tgtgtataagagacagTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTC < SRR3722086.664919/84‑1 (MQ=60)
CATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTC < SRR3722086.1177299/100‑1 (MQ=60)
CATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTC > SRR3722086.896347/1‑100 (MQ=60)
CATATGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTC > SRR3722086.830571/1‑100 (MQ=60)
TGAAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATAT < SRR3722086.168217/100‑1 (MQ=60)
AAACGTGCATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCG < SRR3722086.502283/100‑1 (MQ=60)
ATTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAGCT > SRR3722086.746109/1‑100 (MQ=60)
TTTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAGCTT > SRR3722086.560933/1‑100 (MQ=60)
TTATTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAGCTTG > SRR3722086.593865/1‑100 (MQ=60)
TTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCtgactcttatacac > SRR3722086.1201428/1‑86 (MQ=60)
TTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAGCTTGTGC < SRR3722086.569950/100‑1 (MQ=60)
TTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAGCTTGTGC > SRR3722086.1142396/1‑100 (MQ=60)
TTATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAGCTTGTGC < SRR3722086.186039/100‑1 (MQ=60)
ATGGTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAGCTTGTGCCA > SRR3722086.220793/1‑100 (MQ=60)
GTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAGCTTGTGCCAAAG > SRR3722086.294320/1‑100 (MQ=60)
GTGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAGCTTGTGCCAAAG > SRR3722086.276060/1‑100 (MQ=60)
TGCTGGGCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAGCTTGTGCCAAAGG < SRR3722086.432882/100‑1 (MQ=60)
GCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAGCTTGTGCCAAAGGCGAAGC < SRR3722086.1147995/100‑1 (MQ=60)
GCTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAGCTTGTGCCAAAGGCGAAGC < SRR3722086.968939/100‑1 (MQ=60)
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TCGCCGTATCAGCGAATAACGGTATACTGATCTGATCATTTAAATTTGAAGCACTGAGTACGGAGAACATATGAAACGTGCATTTATTATGGTGCTGGACTCATTCGGCATCGGCGCTACAGAAGATGCAGAACGCTTTGGTGACGTCGGGGCTGACACCCTGGGTCATATCGCAGAAGCTTGTGCCAAAGGCGAAGC > NZ_CP009273/4609350‑4609547
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
