Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F2 I213 R1
|
8 |
41.3 |
2526560 |
96.1% |
2428024 |
85.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
NZ_CP009273 |
4,609,810 |
Δ72 bp |
coding (391‑462/1224 nt) |
deoB → |
phosphopentomutase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NZ_CP009273 |
= 4609809 | 6 (0.140) | 57 (1.400) |
34/156 |
0.1 |
93.8% |
coding (390/1224 nt) |
deoB |
phosphopentomutase |
| ? | NZ_CP009273 |
4609882 = |
2 (0.050) | coding (463/1224 nt) |
deoB |
phosphopentomutase |
GTCTGGTCACTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/4609716‑4609809
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggatCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCTGACTCCGTGTTCCAGATTGCCTGCCATGA > NZ_CP009273/4609882‑4609964
GTCTGGTCACTGGGAAATTGCCGGTGTCCTGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCT < 2:476132/90‑1
GTCTGGTCACTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCT > 2:707060/1‑90
TCTGGTCACTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTG > 2:1159559/1‑90
TCTGGTCACTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTG > 2:929628/1‑90
TCTGGTCACTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTG > 1:1089922/1‑90
TCTGGTCACTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTG > 1:593677/1‑90
GGTCACTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGAT > 1:1008234/1‑90
GGTCACTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGAT > 1:4993/1‑90
GGTCACTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGAT > 1:301304/1‑90
CTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACT > 1:1045918/1‑90
CTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACT < 1:884731/90‑1
CTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACT > 1:1178679/1‑90
CTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACT < 1:96345/90‑1
CTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACT < 2:1136253/90‑1
CTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACT < 1:442773/90‑1
GGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGG > 2:557818/1‑90
AATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGA < 1:129487/90‑1
TTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAG < 1:444233/90‑1
GCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAG > 2:332902/1‑90
CCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGC < 2:96774/90‑1
CCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGC < 1:1034581/90‑1
CCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGC < 2:991336/90‑1
CCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGC < 1:666219/90‑1
CGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCA > 1:1225430/1‑90
TCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGG > 1:177/1‑90
TGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCA > 1:702956/1‑90
TGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCA > 1:841337/1‑90
TGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACT > 2:1255595/1‑64
TGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACT < 1:1255595/64‑1
TGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGC < 2:1060240/54‑1
TGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGC > 1:1060240/1‑54
TGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCC < 2:1095918/90‑1
GAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCG > 1:752032/1‑90
GAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCG > 2:111477/1‑90
AGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGA < 2:923647/90‑1
GTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGAT < 1:638897/90‑1
GTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGAT < 1:301934/90‑1
GGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTT > 1:141313/1‑90
TATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTAT < 2:207357/90‑1
TTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATAC < 2:292284/90‑1
TTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATAC < 2:113127/90‑1
TCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCT < 2:551662/90‑1
CTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATC > 2:732970/1‑41
CTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATC < 1:732970/41‑1
TCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCTCC > 1:523328/1‑90
GATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCT > 2:535283/1‑90
GATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCT > 2:1112778/1‑90
GATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCT > 2:1019321/1‑90
TCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCTGA < 2:177/90‑1
TCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCTGA < 1:657895/90‑1
CACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCTGAC < 2:524384/90‑1
CACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCTGAC > 1:399890/1‑90
CGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCTGACTC < 1:758336/90‑1
AAACCAGCTTCCCGCAAGAGCTGCTGGACCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCTGACTCCG < 1:746141/90‑1
AAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCTGACTCCG < 2:412319/90‑1
AAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCTGACTCCG < 2:479597/90‑1
AACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCTGACTCCGTG < 2:219487/90‑1
AACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCTGACTCCGTG < 2:515967/90‑1
GCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCTGACTCCGTGTTCC > 1:1024709/1‑90
CAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGAT < 2:254359/53‑1
CAAGAGCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGAT > 1:254359/1‑53
GCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCTGACTCCGTGTTCCAGATTGCCTGCCA < 1:920827/90‑1
GCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGAT < 2:320016/48‑1
GCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGAT > 2:795846/1‑48
GCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGAT < 1:795846/48‑1
GCTGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGAT > 1:320016/1‑48
TGCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCTGACTCCGTGTTCCAGATTGCCTGCCATG > 2:534959/1‑90
GCTGGATCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCTGACTCCGTGTTCCAGATTGCCTGCCATGA > 1:941948/1‑90
GTCTGGTCACTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/4609716‑4609809
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggatCAACTGGGCGAAGAGCACATGAAAACCGGCAAGCCGATTTTCTATACCTCCGCTGACTCCGTGTTCCAGATTGCCTGCCATGA > NZ_CP009273/4609882‑4609964
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCCGTCTGGTCACTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATAAACTGGTCGAACGCGCTAATCTGCCGGGTTACCTCGGTAACTGCCACTCTTCCG > NZ_CP009273/4609713‑4609864
|
CCCGTCTGGTCACTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGT‑GGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAAC < SRR3722096.442629/100‑1 (MQ=60)
CCGTCTGGTCACTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAAC < SRR3722096.187214/100‑1 (MQ=60)
CCGTCTGGTCACTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAAC < SRR3722096.225660/100‑1 (MQ=60)
CGTCTGGTCACTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACT > SRR3722096.1063927/1‑100 (MQ=60)
CGTCTGGTCACTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACT > SRR3722096.1199272/1‑100 (MQ=60)
agatggtcgtcggcagcgtcagatgtgtataagagacagGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGGCGA < SRR3722096.744154/61‑1 (MQ=60)
tgtgtataagagacagGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGgcgaagag < SRR3722096.1277492/84‑9 (MQ=60)
CTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGgcgaagag < SRR3722096.97701/100‑9 (MQ=60)
CTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGgcgaagag < SRR3722096.899466/100‑9 (MQ=60)
CTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGgcgaagag < SRR3722096.449204/100‑9 (MQ=60)
GGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGgcgaagagca > SRR3722096.1246802/1‑90 (MQ=60)
AATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGgcgaagagcacatg < SRR3722096.131328/100‑15 (MQ=60)
TTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGgcgaagagcacatgaa < SRR3722096.450691/100‑17 (MQ=60)
CCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGgcgaagagcacatgaaaac < SRR3722096.1052368/100‑20 (MQ=60)
CCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGgcgaagagcacatgaaaac < SRR3722096.676316/100‑20 (MQ=60)
GTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGgcgaagagcacatgaaaaccgg > SRR3722096.184/1‑78 (MQ=60)
GTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGgcgaagagcacatgaaaaccggca > SRR3722096.713664/1‑76 (MQ=60)
GTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGgcgaagagcacatgaaaaccggca > SRR3722096.855101/1‑76 (MQ=60)
GGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGgcgaagagcacatgaaaaccggcaagccg > SRR3722096.763622/1‑71 (MQ=60)
CTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGGgcgaagagcacatgaaaaccggcaagccgattt > SRR3722096.143339/1‑67 (MQ=60)
TGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATAAACTGGTCGAACGCGCTAATCTGCCGGGTTACCTCGGTAA < SRR3722096.268563/100‑1 (MQ=60)
GTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGG < SRR3722096.306415/59‑1 (MQ=60)
GTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGG < SRR3722096.648488/59‑1 (MQ=60)
GGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGG > SRR3722096.530798/1‑56 (MQ=60)
TATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATAAACTGGTCGAACGCGCTAATCTGCCGGGTTACCTCGGTAACTGCCACTCTTCCG > SRR3722096.398849/1‑100 (MQ=60)
TTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGG > SRR3722096.405737/1‑50 (MQ=60)
TCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGG < SRR3722096.667851/41‑1 (MQ=60)
CACGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGG > SRR3722096.1042287/1‑40 (MQ=60)
CGAAAACAGCTTCCCGCAAGAGCTGCTGGATCAACTGG < SRR3722096.770056/38‑1 (MQ=60)
|
CCCGTCTGGTCACTGGGAAATTGCCGGTGTCCCGGTTCTGTTTGAGTGGGGATATTTCTCCGATCACGAAAACAGCTTCCCGCAAGAGCTGCTGGATAAACTGGTCGAACGCGCTAATCTGCCGGGTTACCTCGGTAACTGCCACTCTTCCG > NZ_CP009273/4609713‑4609864
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
