Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F5 I97 R1
|
275 |
44.0 |
1733530 |
96.5% |
1672856 |
122.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
465,858 |
T→C |
I511T (ATC→ACC) |
mdlA → |
SmdA family multidrug ABC transporter permease/ATP‑binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 465,858 | 0 | T | C | 75.7%
| 54.5
/ 21.1
| 37 | I511T (ATC→ACC) | mdlA | SmdA family multidrug ABC transporter permease/ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base T (5/4); new base C (12/16); total (17/20) |
| Fisher's exact test for biased strand distribution p-value = 7.03e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.45e-01 |
GGCGAGCGCGGTGTGATGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGATCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATTGTGATGCAGCACGGACATATCGCCCAGCGTGGCAATCATGATGTGC > NZ_CP009273/465725‑465995
|
ggCGAGCGCGGTGTGATGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGTCGCACTGAGCACCAGATCCTg > 1:223184/1‑138 (MQ=255)
ggCGAGCGCGGTGTGATGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTg > 1:178817/1‑138 (MQ=255)
ggCGAGCGCGGTGTGATGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTg > 2:816345/1‑138 (MQ=255)
ggCGAGCGCGGTGTGATGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTg > 2:178683/1‑138 (MQ=255)
ggCGAGCGCGGTGTGATGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTg > 1:815039/1‑138 (MQ=255)
ggCGAGCGCGGTGTGATGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGc > 2:218523/1‑139 (MQ=255)
ggCGAGCGCGGTGTGATGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGCGGACGGACCCCCTGAGCACCAGGCCCTg > 2:499817/1‑138 (MQ=255)
aTGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGATCCTGCATAACCTGCGTCAGt < 1:645440/139‑1 (MQ=255)
aTGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGt < 1:218523/139‑1 (MQ=255)
aTGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTAGTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGt < 1:499817/139‑1 (MQ=255)
tCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTggggg > 1:866355/1‑138 (MQ=255)
tCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTggggg < 1:816345/138‑1 (MQ=255)
cggcggGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCa < 1:865372/138‑1 (MQ=255)
cggcggGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGGCAGTGGGGGCAg > 2:240265/1‑139 (MQ=255)
aaaaCAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACg < 2:384134/139‑1 (MQ=255)
gTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAatcat < 1:95763/139‑1 (MQ=255)
gTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGATCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAg > 2:109679/1‑127 (MQ=255)
gTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGATCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAg < 1:109679/127‑1 (MQ=255)
gCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCttt > 1:129603/1‑139 (MQ=255)
ttaGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCAc < 2:129603/139‑1 (MQ=255)
ttaGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCAc < 2:178817/139‑1 (MQ=255)
cgcgGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGATCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACgg > 1:802076/1‑137 (MQ=255)
cgcgGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGt > 2:348646/1‑83 (MQ=255)
cgcgGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGt < 1:348646/83‑1 (MQ=255)
aTCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGATCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAatta > 2:731796/1‑139 (MQ=255)
atgatgCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGATCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATTGTGAt < 2:802076/139‑1 (MQ=255)
tgatgCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATTGTGATg < 1:623076/139‑1 (MQ=255)
tgatgCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATTGTGATg < 2:8123/139‑1 (MQ=255)
atgCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGATCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATTGTGATg > 1:635059/1‑137 (MQ=255)
tgCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATTGTGATgcag < 1:670079/139‑1 (MQ=255)
gcgcTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATtg > 1:762961/1‑130 (MQ=255)
gcgcTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATtg < 2:762961/130‑1 (MQ=255)
tGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGt < 2:95370/45‑1 (MQ=255)
tGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGt > 1:95370/1‑45 (MQ=255)
cTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATTGTGATGCAGCACGGACATATCGCCCAGCGTGGCaa < 1:630219/139‑1 (MQ=255)
aCCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATTGTGATGCAGCACGGACATATCGCCCAGCGTGGCAATCatga < 2:815039/139‑1 (MQ=255)
aTCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATTGTGATGCAGCACGGACATATCGCCCAGCGTGGCAATCATGATGTGc < 1:731796/139‑1 (MQ=255)
|
GGCGAGCGCGGTGTGATGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGATCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATTGTGATGCAGCACGGACATATCGCCCAGCGTGGCAATCATGATGTGC > NZ_CP009273/465725‑465995
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTTACGATACAGAGGTGGGCGAGCGCGGTGTGATGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGATCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATTGTGATGCAGCACGGACATATCGCCCAGCGTGGCAATCATGATGTGCTGGCACAACAA > NZ_CP009273/465708‑466006
|
GTTACGATACAGAGGTGGGCGAGCGCGGTGTGATGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGAC < SRR3722120.73628/151‑1 (MQ=60)
ATACAGAGGTGGGCGAGCGCGGTGTGATGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGTCGCACTGAGCACCAGATCCTGC > SRR3722120.226310/1‑150 (MQ=60)
ATACAGAGGTGGGCGAGCGCGGTGTGATGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGC > SRR3722120.181253/1‑150 (MQ=60)
ATACAGAGGTGGGCGAGCGCGGTGTGATGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGC > SRR3722120.826018/1‑150 (MQ=60)
GAGGTGGGCGAGCGCGGTGTGATGCTTTCCGGCGGTCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGCCCCTGCATAACC < SRR3722120.204859/151‑1 (MQ=60)
GTGTGATGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGC > SRR3722120.877919/1‑150 (MQ=60)
agattcgccttagtctcgtgggctcggagatgtgtataagagacaGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGA < SRR3722120.353688/106‑1 (MQ=60)
GATGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGATCCTGCATAACCTGCGTCAGTGGGGGCAGGGA < SRR3722120.654341/151‑1 (MQ=60)
GATGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGA < SRR3722120.221583/151‑1 (MQ=60)
GATGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTAGTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGA < SRR3722120.506988/151‑1 (MQ=60)
GCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGATCCTGCATctgtctcttatacacatctccgagccc > SRR3722120.235710/1‑124 (MQ=60)
TTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAAC < SRR3722120.827338/150‑1 (MQ=60)
CCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGG < SRR3722120.876927/150‑1 (MQ=60)
CGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATC < SRR3722120.97039/151‑1 (MQ=60)
AGCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGATCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCC < SRR3722120.111136/151‑1 (MQ=60)
CCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTC > SRR3722120.131346/1‑151 (MQ=60)
TTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGATCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGA > SRR3722120.812871/1‑149 (MQ=60)
TTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctgcttg > SRR3722120.26287/1‑85 (MQ=60)
TTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTctgtctcttatacacatctccgagcccacgagactaaggcgaatatcgtatgccgtcttctgctt > SRR3722120.276120/1‑86 (MQ=60)
CATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGATCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATTGTGATGC > SRR3722120.643835/1‑149 (MQ=60)
TCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATTGTGATGCAGC > SRR3722120.773241/1‑150 (MQ=60)
ATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATTGTGATGCAGCACGGACA < SRR3722120.631731/151‑1 (MQ=60)
ATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATTGTGATGCAGCACGGACATAT < SRR3722120.679260/151‑1 (MQ=60)
GCTTTCGGCGGTGGACGGACGCACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGActgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaataa > SRR3722120.96637/1‑67 (MQ=60)
ACTGAGCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATTGTGATGCAGCACGGACATATCGCCCAGCGTGGCAATCATGATGTGC < SRR3722120.638941/151‑1 (MQ=60)
GCACCAGACCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATTGTGATGCAGCACGGACATATCGCCCAGCGTGGCAATCATGATGTGCTGGC > SRR3722120.209266/1‑150 (MQ=60)
GATCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATTGTGATGCAGCACGGACATATCGCCCAGCGTGGCAATCATGATGTGCTGGCACAACAA < SRR3722120.741704/151‑1 (MQ=60)
|
GTTACGATACAGAGGTGGGCGAGCGCGGTGTGATGCTTTCCGGCGGGCAAAAACAGCGTATCTCCATTGCTCGTGCGTTATTAGTCAACGCGGAAATCCTCATCCTTGATGATGCGCTTTCGGCGGTGGACGGACGCACTGAGCACCAGATCCTGCATAACCTGCGTCAGTGGGGGCAGGGAAGAACGGTAATCATCAGTGCCCATCGCCTTTCTGCACTGACGGAAGCCAGTGAAATTATTGTGATGCAGCACGGACATATCGCCCAGCGTGGCAATCATGATGTGCTGGCACAACAA > NZ_CP009273/465708‑466006
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
