Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I179 R1
|
182 |
40.3 |
1547118 |
96.8% |
1497610 |
120.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
4,540,434 |
A→C |
V227G (GTT→GGT) |
gntP ← |
gluconate permease GntP |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 4,540,434 | 0 | A | C | 86.2%
| 169.2
/ 18.3
| 58 | V227G (GTT→GGT) | gntP | gluconate permease GntP |
| Reads supporting (aligned to +/- strand): ref base A (3/5); new base C (21/29); total (24/34) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
CAATAAACATTGCAATCGGCGAGGAACCGATAAAGTTAACCACTTCCCAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAAACGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGACCTGCGCAGATTACACTTGGGATCGTCACCAGTA > NZ_CP009273/4540300‑4540569
|
cAATAAACATTGCAATCGGCGAGGAACCGATAAAGTTAACCACTTCCCAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGcc > 1:692673/1‑139 (MQ=255)
tAAACATTGCAATCGGCGAGGAACCGATAAAGTTAACCACTTCCCAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGa > 2:581343/1‑138 (MQ=255)
tAAACATTGCAATCGGCGAGGAACCGATAAAGTTAACCACTTCCCAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGAGGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGaa < 2:208507/139‑1 (MQ=255)
aaaCATTGCAATCGGCGAGGAACCGATAAAGTTAACCACTTCCCAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGaaa < 2:692673/139‑1 (MQ=255)
ttGCAATCGGCGAGGACCGGATAAAGTTAACCACTCCCCAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAggg < 2:563260/139‑1 (MQ=255)
gCAATCGGCGAGGAACCGATAAAGTTAACCACTTCCCAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAggg > 2:758935/1‑137 (MQ=255)
cAATCGGCGAGGAACCGATAAAGTTAACCACTTCCCAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAg < 1:677745/139‑1 (MQ=255)
cGGCGAGGAACCGATAAAGTTAACCACTTCCCAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGATGGTGGGAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGatta < 2:423741/139‑1 (MQ=255)
cGAAAAAGTTAACCACTTCCCAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGCCCCCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTAc < 2:100214/139‑1 (MQ=255)
gATAAAGTTAACCACTTCCCAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTAcc > 2:165839/1‑139 (MQ=255)
cccAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGatta > 1:67142/1‑110 (MQ=255)
cccAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGatta < 2:67142/110‑1 (MQ=255)
cccAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAAACGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTc < 2:463932/137‑1 (MQ=255)
ggggTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAatgatg > 1:311971/1‑139 (MQ=255)
ttACCAGCCAGATATTGGCGATGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTgg < 2:278417/136‑1 (MQ=255)
ttACCAGCCAGATATTGGCGATGGTGGTAGAGATCAAAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTgg < 2:328258/136‑1 (MQ=255)
tACCAGCCAGATATTGGCGATGGTGGTAGAGATCATAATGATCTCCGGGATCAGCGGCCCCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGgcg < 1:218203/138‑1 (MQ=255)
cagccagATATTGGCGATGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTc > 1:147373/1‑138 (MQ=255)
atatTGGCGATGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTggg < 1:543746/126‑1 (MQ=255)
atatTGGCGATGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTggg > 2:543746/1‑126 (MQ=255)
gCGATGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAgg < 1:165839/138‑1 (MQ=255)
aTGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACt < 1:499208/139‑1 (MQ=255)
tggtggTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAAACGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTc > 1:65929/1‑98 (MQ=255)
tggtggTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAAACGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTc < 2:65929/98‑1 (MQ=255)
tggtggTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAAACGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACtt > 1:81736/1‑139 (MQ=255)
tggtAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCgg < 1:309764/139‑1 (MQ=255)
tggtAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAAACGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCgg < 2:81736/139‑1 (MQ=255)
ggtAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGc < 1:339269/139‑1 (MQ=255)
gtAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGc < 1:758935/138‑1 (MQ=255)
agaTCATAATGATCGCCGGGATCAGCGCCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGAt < 2:29801/139‑1 (MQ=255)
agaTCATAAGGATCGCCGGGATCAGCGGCACCAGAATGGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGAt < 1:631508/139‑1 (MQ=255)
tCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAAACGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGAt > 2:328501/1‑136 (MQ=255)
cATAATGATCGCCGGGATCAGCGGCCCCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTAcc < 1:247096/70‑1 (MQ=255)
cATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATc < 2:17813/66‑1 (MQ=255)
cATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATc > 1:17813/1‑66 (MQ=255)
cATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTAcc > 2:247096/1‑70 (MQ=255)
cATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCgg > 2:25488/1‑72 (MQ=255)
cATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCgg < 1:25488/72‑1 (MQ=255)
cATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGa > 1:50859/1‑139 (MQ=255)
cATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGa > 1:93343/1‑139 (MQ=255)
cATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGa > 2:547815/1‑139 (MQ=255)
cATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGa > 1:569066/1‑139 (MQ=255)
aTAATGATCGCCGGGATCAGCGGCACCAGAATCGAAACGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGAc < 2:648817/139‑1 (MQ=255)
ttaTCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGACCTgc < 2:607265/137‑1 (MQ=255)
tGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGACCTgc < 2:593107/139‑1 (MQ=255)
aTCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTggg < 1:40197/96‑1 (MQ=255)
aTCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTggg > 2:40197/1‑96 (MQ=255)
tCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGTGCGCTCAAGATTGCCGCGGAACTTCAGCAGGATCAGACCTgcg > 2:732659/1‑137 (MQ=255)
cGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGa > 2:304248/1‑46 (MQ=255)
cGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGa < 1:304248/46‑1 (MQ=255)
gCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAgg < 2:466869/40‑1 (MQ=255)
gCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAgg > 1:466869/1‑40 (MQ=255)
gCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGACCTgcg > 2:669030/1‑135 (MQ=255)
gCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGAt > 2:514800/1‑93 (MQ=255)
gCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGAt < 1:514800/93‑1 (MQ=255)
cGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGACCTGCGCAGATTACACTTggg < 1:669030/139‑1 (MQ=255)
ccAGAATCGAAACGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGACCTGCGCAGATTACACTTGGGATCGt < 2:452813/139‑1 (MQ=255)
gAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGACCTGCGCAGATTACACTTGGGATCGTCACCAGTa < 2:4142/139‑1 (MQ=255)
|
CAATAAACATTGCAATCGGCGAGGAACCGATAAAGTTAACCACTTCCCAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGATCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAAACGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGACCTGCGCAGATTACACTTGGGATCGTCACCAGTA > NZ_CP009273/4540300‑4540569
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AACCACCATCGCAATAAACATTGCAATCGGCGAGGAACCGATAAAGTTAACCACTTCCCAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAAACGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGACCTGCGCAGATTACACTTGGGATCGTCACCAGTACGC > NZ_CP009273/4540289‑4540572
|
AACCACCATCGCAATAAACATTGCAATCGGCGAGGAACCGATAAAGTTAACCACTTCCCAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCG > SRR3722133.701660/1‑151 (MQ=60)
GCAATCGGCGAGGAACCGATAAAGTTAACCACTTCCCAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATAT < SRR3722133.686546/151‑1 (MQ=60)
tcttttttttttttttcaagcagaagacggcatacgagatctagtacggtctcgtgggctcggagatgtgtataagagacAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATC < SRR3722133.308420/70‑1 (MQ=60)
aagacggcatacgatatctagtacggtctcgtgggctcggagatgtgtataagagacaGGTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCCCCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGC < SRR3722133.250480/93‑1 (MQ=60)
gacggcatacgagatctagtacggtctcgtgggctcggagatgtgtataagagacaGGTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTT < SRR3722133.25812/95‑1 (MQ=60)
GTTAACCACTTCCCAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCtgtctcttatacacatct > SRR3722133.67986/1‑133 (MQ=60)
CTTCCCAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGG > SRR3722133.316257/1‑151 (MQ=60)
GTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCA > SRR3722133.149311/1‑150 (MQ=60)
cagTTACCAGCCAGATATTGGCGATGGTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATT < SRR3722133.550986/148‑1 (MQ=60)
cgtgggctcggagatgtgtataagagacAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATT < SRR3722133.40701/120‑1 (MQ=60)
TTACCAGCCAGATATTGGCGATGGTGGTAGAGA‑‑‑TCATAATGATCTCCGGGATCAGCGGCCCCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGC < SRR3722133.221166/150‑1 (MQ=60)
GCCAGATATTGGCGATGGTGGTAAGGAAGGA‑‑‑ACAGTTCCAATTAAAATTGGAATTCCGGCCCCGGGGGGAATTCCAAGGCCGGGGCCACCCCCAAGGAAAATTCCGGAAAACCCCGGCCCCGGAAAAAAGGAAGGGGGGCCAAGGAATTATTC < SRR3722133.438095/64‑4294967272 (MQ=60)
cggtctcgtgggctcggagatgtgtataagagacagCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAAC < SRR3722133.521716/115‑1 (MQ=60)
GATATTGGCGATGGTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAAACGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCtgtctcttatacacatctccgagcccacg > SRR3722133.66765/1‑121 (MQ=60)
GATATTGGCGATGGTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAAACGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTC > SRR3722133.82768/1‑151 (MQ=60)
GGCGATGGTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAG < SRR3722133.168048/150‑1 (MQ=60)
GATGGTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATC < SRR3722133.505948/151‑1 (MQ=60)
GTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGctgtctcttatacacatctccgagcccacgagaccgtactagatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaaaaaaaacaaat > SRR3722133.204232/1‑58 (MQ=60)
GTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGtctcttatacacatctccgagcccacgagaccgtactagatctcgtatgccgtcttctgc > SRR3722133.18027/1‑91 (MQ=60)
GTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGAC > SRR3722133.576610/1‑151 (MQ=60)
GTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGAC > SRR3722133.94544/1‑151 (MQ=60)
GTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGAC > SRR3722133.51498/1‑151 (MQ=60)
GTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGAC < SRR3722133.314020/151‑1 (MQ=60)
GTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAAACGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCAGAGGAACTTCGACAGGNN > SRR3722133.388290/1‑146 (MQ=60)
GGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGACC < SRR3722133.344037/151‑1 (MQ=60)
GGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGACC < SRR3722133.768752/150‑1 (MQ=60)
GAGA‑‑‑TCATAAGGATCGCCGGGATCAGCGGCACCAGAATGGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGACCTGCGC < SRR3722133.639779/151‑1 (MQ=60)
TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCctgtctcttatacacatctccgagcccacgagaccgtactagatctcgtatgccgtcttctgcttgaaaaaaaaaaataaacaaca > SRR3722133.473221/1‑62 (MQ=60)
GCGGCACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGACCTGCGCAGATTACACTTGGGATCGTCACCAG < SRR3722133.677732/151‑1 (MQ=60)
CACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCtgtctcttatacacatctccgagcccacgagaccgtactagatctcgtatgccgtctt > SRR3722133.514371/1‑93 (MQ=60)
ACCAGAATCGAACCGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGACCctgtctcttatacacatctccgagcccacgagacc > SRR3722133.261015/1‑116 (MQ=60)
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AACCACCATCGCAATAAACATTGCAATCGGCGAGGAACCGATAAAGTTAACCACTTCCCAGGCAGGGGTATCTTTTACCAGCCAGATATTGGCGATGGTGGTAGAGA‑‑‑TCATAATGATCGCCGGGATCAGCGGCACCAGAATCGAAACGCCGAAAGAGGGCAGATTATTCATATCTACCGGTTGATCTGCTTTCAGGAATGATGGCGTTGGGCGCTCAAGATTGCCGAGGAACTTCGGCAGGATCAGACCTGCGCAGATTACACTTGGGATCGTCACCAGTACGC > NZ_CP009273/4540289‑4540572
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
