Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I176 R1
|
180 |
42.9 |
1710034 |
96.5% |
1650182 |
119.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
4,585,319 |
Δ1 bp |
coding (350/915 nt) |
lgoR ← |
GntR family transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 4,585,317 | 0 | C | . | 100.0%
| 246.6
/ NA
| 55 | coding (352/915 nt) | lgoR | GntR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (27/28); total (27/28) |
AGCTGCTCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAA > NZ_CP009273/4585190‑4585441
|
aGCTGCTCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTg < 2:741558/139‑1 (MQ=255)
gctCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGt > 2:303925/1‑139 (MQ=255)
tCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTC‑TACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGtt > 1:734017/1‑137 (MQ=255)
cGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGa > 1:782279/1‑138 (MQ=255)
tAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGaaaa > 1:235133/1‑139 (MQ=255)
aTTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGtt < 1:158318/139‑1 (MQ=255)
aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTccc > 1:167966/1‑139 (MQ=255)
aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTccc > 2:667881/1‑139 (MQ=255)
aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTccc > 2:400294/1‑139 (MQ=255)
aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTccc < 2:167966/139‑1 (MQ=255)
ttGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGc < 1:443714/139‑1 (MQ=255)
tCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAAc > 1:258448/1‑139 (MQ=255)
tCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAAc > 1:52974/1‑139 (MQ=255)
cTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgc < 1:313611/138‑1 (MQ=255)
cTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgc < 1:366840/138‑1 (MQ=255)
cACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc < 2:258448/137‑1 (MQ=255)
cACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc < 1:627943/137‑1 (MQ=255)
cACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGCTTCCACTGGGCGCAACTGGCGCTg > 2:313611/1‑139 (MQ=255)
cgcgCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTat > 1:283010/1‑138 (MQ=255)
aaTAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGcc < 1:461175/138‑1 (MQ=255)
aTAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACg < 1:494839/90‑1 (MQ=255)
aTAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACg > 2:494839/1‑90 (MQ=255)
aTTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCaa < 1:543/139‑1 (MQ=255)
taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGcc > 2:675190/1‑128 (MQ=255)
taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGcc < 1:675190/128‑1 (MQ=255)
taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAacac > 2:89726/1‑139 (MQ=255)
taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAacac > 2:224287/1‑139 (MQ=255)
taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTCCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAacac > 2:186926/1‑139 (MQ=255)
aCGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACt < 1:264725/138‑1 (MQ=255)
aCGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACt < 1:20110/138‑1 (MQ=255)
ccGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACtttgtt > 2:684454/1‑139 (MQ=255)
cGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACtttgttt > 2:419746/1‑139 (MQ=255)
ttttAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTttgttttgtt < 2:283010/139‑1 (MQ=255)
tAAAAGATATTCTC‑TACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCAc < 2:734017/138‑1 (MQ=255)
aGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCAt < 2:782279/139‑1 (MQ=255)
tatTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGa < 1:224287/139‑1 (MQ=255)
ttCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAg < 1:303925/139‑1 (MQ=255)
ttCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAg < 1:89726/139‑1 (MQ=255)
ttACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCgg < 1:684454/137‑1 (MQ=255)
tactacAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGgtag > 2:411406/1‑139 (MQ=255)
ccGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCg < 1:419746/139‑1 (MQ=255)
ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAAc < 2:605364/58‑1 (MQ=255)
ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAAc > 1:605364/1‑58 (MQ=255)
ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgc < 1:846373/62‑1 (MQ=255)
ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgc > 2:846373/1‑62 (MQ=255)
ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGcc > 2:538430/1‑88 (MQ=255)
ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGcc < 1:538430/88‑1 (MQ=255)
ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAg < 2:462574/122‑1 (MQ=255)
ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAg > 1:462574/1‑122 (MQ=255)
ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTAc < 1:3835/131‑1 (MQ=255)
ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTAc > 2:3835/1‑131 (MQ=255)
ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGaaa > 1:237976/1‑139 (MQ=255)
ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCGGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGaaa > 1:188693/1‑139 (MQ=255)
cTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcg < 1:413648/61‑1 (MQ=255)
cTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcg > 2:413648/1‑61 (MQ=255)
|
AGCTGCTCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAA > NZ_CP009273/4585190‑4585441
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAAACAGCTGCTCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGTCATC > NZ_CP009273/4585185‑4585449
|
CAAACAGCTGCTCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTC‑TACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTC > SRR3722130.744791/1‑149 (MQ=60)
CAGCTGCTCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAA > SRR3722130.793697/1‑150 (MQ=60)
GCTGCTCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAAC > SRR3722130.238750/1‑151 (MQ=60)
GCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCC > SRR3722130.170498/1‑151 (MQ=60)
ccttagtctcgtgggctcggagatgtgtataagagacagTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGG < SRR3722130.502487/112‑1 (MQ=60)
GATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCG < SRR3722130.160667/151‑1 (MQ=60)
ATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACT > SRR3722130.53704/1‑151 (MQ=60)
ATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACT > SRR3722130.262487/1‑151 (MQ=60)
ATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGC < SRR3722130.450681/151‑1 (MQ=60)
caagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGGTTATC < SRR3722130.858600/84‑1 (MQ=60)
GCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATC < SRR3722130.318497/150‑1 (MQ=60)
GCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATC < SRR3722130.372598/150‑1 (MQ=60)
GCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATC > SRR3722130.287385/1‑150 (MQ=60)
tcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagCTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCA < SRR3722130.420193/83‑1 (MQ=60)
CCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCAT < SRR3722130.637348/149‑1 (MQ=60)
cgccttagtctcgtgggctcggagatgtgtataagagacagTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACAC < SRR3722130.546623/110‑1 (MQ=60)
GGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACAC < SRR3722130.685222/151‑1 (MQ=60)
GAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACAC < SRR3722130.468369/150‑1 (MQ=60)
GATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTT < SRR3722130.555/151‑1 (MQ=60)
AACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTC < SRR3722130.268850/150‑1 (MQ=60)
AACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTC < SRR3722130.20368/150‑1 (MQ=60)
ATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTAC < SRR3722130.227705/151‑1 (MQ=60)
ATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAG < SRR3722130.90983/151‑1 (MQ=60)
ATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAG < SRR3722130.308638/151‑1 (MQ=60)
CTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCG < SRR3722130.694617/149‑1 (MQ=60)
TACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctgcttgaaaa > SRR3722130.614443/1‑80 (MQ=60)
TACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGctgtctc > SRR3722130.469788/1‑144 (MQ=60)
TACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAAC > SRR3722130.241635/1‑151 (MQ=60)
TACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCGGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAAC > SRR3722130.191532/1‑151 (MQ=60)
ACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCG < SRR3722130.3890/149‑1 (MQ=60)
ACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGTCATC < SRR3722130.426379/151‑1 (MQ=60)
|
CAAACAGCTGCTCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGTCATC > NZ_CP009273/4585185‑4585449
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
