Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I175 R1
|
328 |
64.7 |
2582366 |
96.2% |
2484236 |
120.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
4,585,319 |
Δ1 bp |
coding (350/915 nt) |
lgoR ← |
GntR family transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 4,585,317 | 0 | C | . | 97.9%
| 420.6
/ 1.7
| 96 | coding (352/915 nt) | lgoR | GntR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base . (58/36); total (59/37) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.48e-01 |
TGCTCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGTCA > NZ_CP009273/4585193‑4585447
|
tgctCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAg > 2:652336/1‑139 (MQ=255)
tgctCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAg > 2:638346/1‑139 (MQ=255)
tgctCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAg > 2:804632/1‑139 (MQ=255)
tgctCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAg > 2:543926/1‑139 (MQ=255)
aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGTTTcc > 1:90964/1‑139 (MQ=255)
aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTg < 1:1161792/119‑1 (MQ=255)
aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTg > 2:1161792/1‑119 (MQ=255)
aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGt > 1:937110/1‑134 (MQ=255)
aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGt < 2:937110/134‑1 (MQ=255)
aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTccc > 2:103451/1‑139 (MQ=255)
aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTccc > 2:753631/1‑139 (MQ=255)
aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTccc > 1:801826/1‑139 (MQ=255)
aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTccc > 1:770291/1‑139 (MQ=255)
aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTccc > 2:1225780/1‑139 (MQ=255)
aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTccc > 2:884377/1‑139 (MQ=255)
aTCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTccc > 1:1275030/1‑139 (MQ=255)
aTTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTggg < 2:480579/139‑1 (MQ=255)
aTTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTggg < 2:663988/139‑1 (MQ=255)
aTTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTggg > 2:1002718/1‑139 (MQ=255)
ttGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGc > 2:520422/1‑139 (MQ=255)
tCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAAc > 2:1012539/1‑139 (MQ=255)
cTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgc < 1:860781/138‑1 (MQ=255)
cTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgc < 1:1254354/138‑1 (MQ=255)
cTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgc < 2:801826/138‑1 (MQ=255)
cACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc < 2:90964/138‑1 (MQ=255)
cACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc < 2:986108/137‑1 (MQ=255)
cACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTg > 1:31008/1‑139 (MQ=255)
gCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc > 2:492354/1‑132 (MQ=255)
gCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc < 1:492354/132‑1 (MQ=255)
gCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTa > 2:75282/1‑139 (MQ=255)
gCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTa > 1:589974/1‑139 (MQ=255)
gcgcTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTatca > 1:77796/1‑139 (MQ=255)
gcgcTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTatca > 2:626714/1‑139 (MQ=255)
gcTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTatcatc > 2:384807/1‑139 (MQ=255)
gcTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTatcatc > 2:791244/1‑139 (MQ=255)
gcTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTatcatc > 2:844835/1‑139 (MQ=255)
gcTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGACGCTGGTTTatcatc > 2:910432/1‑139 (MQ=255)
cTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCg < 1:384807/139‑1 (MQ=255)
tataACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCaaa > 2:960314/1‑138 (MQ=255)
ataACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAac < 1:753631/138‑1 (MQ=255)
taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGaa > 1:957117/1‑77 (MQ=255)
taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGaa < 2:957117/77‑1 (MQ=255)
taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTcccc > 2:314520/1‑88 (MQ=255)
taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTcccc < 1:314520/88‑1 (MQ=255)
taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc < 2:587079/104‑1 (MQ=255)
taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc > 1:587079/1‑104 (MQ=255)
taACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAacac > 2:708192/1‑139 (MQ=255)
aCGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACt < 1:1012539/138‑1 (MQ=255)
ccGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACtttgtt > 1:885798/1‑139 (MQ=255)
ccGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACtttgtt > 1:634732/1‑139 (MQ=255)
ccGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACtttgtt < 2:31008/139‑1 (MQ=255)
ccGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACcttgtt > 1:463920/1‑139 (MQ=255)
tAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCa < 1:642807/138‑1 (MQ=255)
tAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCa < 1:543926/138‑1 (MQ=255)
ttCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAg < 1:75282/139‑1 (MQ=255)
ttCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAg < 2:42518/139‑1 (MQ=255)
ttACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCgg < 2:877712/137‑1 (MQ=255)
ttACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCgg < 2:393634/137‑1 (MQ=255)
ctactacAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCgg < 2:1209235/136‑1 (MQ=255)
actacAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAg < 1:4598/96‑1 (MQ=255)
actacAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAg > 2:4598/1‑96 (MQ=255)
ctacAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGgtagta < 2:77796/139‑1 (MQ=255)
ctacAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGgtagta > 1:1152853/1‑139 (MQ=255)
acAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGgtagta > 1:1091988/1‑137 (MQ=255)
aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc > 1:1104119/1‑68 (MQ=255)
aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc > 2:1200822/1‑68 (MQ=255)
aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc < 1:1200822/68‑1 (MQ=255)
aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc < 2:1104119/68‑1 (MQ=255)
aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcg > 2:236578/1‑67 (MQ=255)
aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcg < 1:236578/67‑1 (MQ=255)
aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCAt < 2:544657/121‑1 (MQ=255)
aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCAt > 1:544657/1‑121 (MQ=255)
aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGc > 2:237668/1‑139 (MQ=255)
aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGc > 1:790190/1‑139 (MQ=255)
aCCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGc > 2:1184554/1‑139 (MQ=255)
aCCGGGCTGACACCCGCGG‑CCGAGCCAGGGGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCGCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGc > 1:398029/1‑139 (MQ=255)
cGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc > 1:809302/1‑66 (MQ=255)
cGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc < 2:809302/66‑1 (MQ=255)
ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc < 1:651412/64‑1 (MQ=255)
ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgcgc > 2:651412/1‑64 (MQ=255)
ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgc < 1:881765/62‑1 (MQ=255)
ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGgc > 2:881765/1‑62 (MQ=255)
ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGaaa > 1:924603/1‑139 (MQ=255)
ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGaaa > 1:685048/1‑139 (MQ=255)
ggCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGaaa > 1:526202/1‑139 (MQ=255)
gCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGc < 2:394109/122‑1 (MQ=255)
gCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGc > 1:394109/1‑122 (MQ=255)
gCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAAc > 1:498059/1‑139 (MQ=255)
gCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAAc > 2:952456/1‑139 (MQ=255)
cTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGcc > 2:811012/1‑86 (MQ=255)
cTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGcc < 1:811012/86‑1 (MQ=255)
cTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAAcc > 2:1160669/1‑139 (MQ=255)
cTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAAcc > 1:229502/1‑139 (MQ=255)
acacCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCg < 2:685048/137‑1 (MQ=255)
acacCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGt > 1:835990/1‑138 (MQ=255)
cacCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGtca < 1:708192/139‑1 (MQ=255)
|
TGCTCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGTCA > NZ_CP009273/4585193‑4585447
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCGCGTAGCTCAAACAGCTGCTCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGTCATCATGGTCAGGTTTACGC > NZ_CP009273/4585175‑4585465
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tcgaatttttttttttcaagcagaagacggcatacgatattcgccttagtctcgtgggctcggagatgtgtataagagacagGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCA < SRR3722129.869144/68‑1 (MQ=60)
aagagacaGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAA < SRR3722129.1177993/142‑1 (MQ=60)
aaacaggaataaagcattgttttttttttcaagcagaagacggcatacgatattcgccttagtctcgtgggctcggagatgtgtataagagacagTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTC < SRR3722129.668710/56‑1 (MQ=60)
GCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGTTTCCC > SRR3722129.92158/1‑151 (MQ=60)
GCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCC > SRR3722129.950399/1‑151 (MQ=60)
GCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCC > SRR3722129.781477/1‑151 (MQ=60)
GCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCC > SRR3722129.813402/1‑151 (MQ=60)
GCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCC > SRR3722129.1292735/1‑151 (MQ=60)
cgccttagtctcgtgggctcggagatgtgtataagagacagGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACT < SRR3722129.319015/110‑1 (MQ=60)
GCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGG > SRR3722129.31390/1‑151 (MQ=60)
ATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTAT > SRR3722129.598699/1‑151 (MQ=60)
cagaagacggcatacgatattcgccttagtctcgtgggctcggagatgtgtataagagacagCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCA < SRR3722129.239946/89‑1 (MQ=60)
caagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATC < SRR3722129.894328/84‑1 (MQ=60)
GCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATC < SRR3722129.1271802/150‑1 (MQ=60)
GCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATC < SRR3722129.873051/150‑1 (MQ=60)
agaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCAT < SRR3722129.1217593/90‑1 (MQ=60)
aagcagaagacggcatacgatattcgccttagtctcgtgggctcggagatgtgtataagagacagTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCAT < SRR3722129.661115/86‑1 (MQ=60)
CTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCAT > SRR3722129.78811/1‑151 (MQ=60)
CCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCAT < SRR3722129.499466/149‑1 (MQ=60)
GCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCC < SRR3722129.390434/151‑1 (MQ=60)
tcgccttagtctcgtgggctcggagatgtgtataagagacagCTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACAC < SRR3722129.822679/108‑1 (MQ=60)
cgtgggctcggagatgtgtataagagacagGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAAC < SRR3722129.4660/118‑1 (MQ=60)
GAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatg > SRR3722129.970630/1‑99 (MQ=60)
GAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCtgtctcttatacacatctccgagc > SRR3722129.595763/1‑127 (MQ=60)
GATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTT > SRR3722129.644172/1‑151 (MQ=60)
GATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTT > SRR3722129.898408/1‑151 (MQ=60)
GATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACCTTGTTT > SRR3722129.470666/1‑151 (MQ=60)
TATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTG < SRR3722129.764621/150‑1 (MQ=60)
gattcgccttagtctcgtgggctcggagatgtgtataagagacagGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTT < SRR3722129.1183802/106‑1 (MQ=60)
AACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTC < SRR3722129.1026836/150‑1 (MQ=60)
gggctcggagatgtgtataagagacaGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGTAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGC < SRR3722129.1135750/124‑1 (MQ=60)
TTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGC < SRR3722129.551905/150‑1 (MQ=60)
TTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGC < SRR3722129.652399/150‑1 (MQ=60)
ATATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTAC > SRR3722129.1168945/1‑151 (MQ=60)
ATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAG < SRR3722129.76260/151‑1 (MQ=60)
ATTCTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTAC > SRR3722129.1107255/1‑149 (MQ=60)
CTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCtgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttct > SRR3722129.1119556/1‑91 (MQ=60)
CTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGctgtctct > SRR3722129.552648/1‑143 (MQ=60)
CTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCG > SRR3722129.801644/1‑151 (MQ=60)
CTCTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGGGGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCGCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCG > SRR3722129.403820/1‑151 (MQ=60)
CTTACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCtgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctgc > SRR3722129.820947/1‑89 (MQ=60)
TACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAAC > SRR3722129.695149/1‑151 (MQ=60)
TACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAAC > SRR3722129.937737/1‑151 (MQ=60)
TACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAAC > SRR3722129.533893/1‑151 (MQ=60)
ACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCtgtctc > SRR3722129.399854/1‑145 (MQ=60)
ACTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACC > SRR3722129.505249/1‑151 (MQ=60)
CTACAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCG > SRR3722129.232758/1‑151 (MQ=60)
CAACCGGGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGTC > SRR3722129.847993/1‑150 (MQ=60)
GGCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGTCATCATGG > SRR3722129.887026/1‑151 (MQ=60)
GCTGACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCtgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctgcttgaaaaaaaaaa > SRR3722129.1054629/1‑75 (MQ=60)
ACACCCGCGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGTCATCATGGTCAGG < SRR3722129.718604/151‑1 (MQ=60)
CGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGTCATCATGGTCAGGTTTACGC < SRR3722129.896979/151‑1 (MQ=60)
CGG‑CCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGACGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGTCATCATGGTCAGGTTTACGC < SRR3722129.923328/151‑1 (MQ=60)
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TCGCGTAGCTCAAACAGCTGCTCGGCGTAGGATTGATCGAATTGCTTCATGCTCCACTGGCCGCGCTTTTCGCTGTGAATAAGATTATAACGGCCGAATTTTAAAAGATATTCTCTTACTACAACCGGGCTGACACCCGCGGCCCGAGCCAGTTGCAGTTCAGAAAACGTTTCCCCTGGGCGTAACTGGCGCTGGTTTATCATCGTGAAAAAAGCCTGCTCAAACACTTTGTTTTGTTCACTCATTGAAGCGGTAGTACAGGCGAAACCGTCATCATGGTCAGGTTTACGC > NZ_CP009273/4585175‑4585465
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
