Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F5 I176 R1 180 42.9 1710034 96.5% 1650182 119.3

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTTAATGTTCGTAGGTTATGCATAAAAAAGGCCGCTTACGCGGCCTTAGTGATTACACGTTGTATCAATGATGATCGACAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGAACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTACTGCGTTCTGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGG  >  NZ_CP009273/476646‑476935
                                                                                                                                                    |                                                                                                                                             
CTTAATGTTCGTAGGTTATGCATAAAAAAGGCCGCTTACGCGGCCTTAGTGATTACACGTTGTATCAATGATGATCGACAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGGAC                                                                                                                                             >  SRR3722130.454753/1‑151 (MQ=60)
     TGTTCGTAGGTTATGCATAAAAAAGGCCGCTTACGCGGCCTTAGTGATTACACGTTGTATCAATGATGATCGACAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGAACGA                                                                                                                                           >  SRR3722130.304810/1‑148 (MQ=60)
      GTTCGTAGGTTATGCATAAAAAAGGCCGCTTACGCGGCCTTAGTGATTACACGTTGTATCAATGATGATCGACAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGGACGAAGA                                                                                                                                        >  SRR3722130.689161/1‑150 (MQ=60)
      GTTCGTAGGTTATGCATAAAAAAGGCCGCTTACGCGGCCTTAGTGATTACACGTTGTATCAATGATGATCGACAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGAACGAAGA                                                                                                                                        >  SRR3722130.1694/1‑150 (MQ=60)
                   GCATAAAAAAGGCCGCTTACGCGGCCTTAGTGATTACACGTTGTATCAATGATGATCGACAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGAACGAAGAAGATTGCCAGTAC                                                                                                                           <  SRR3722130.725831/150‑1 (MQ=60)
                    cggagatgtgtataagagacaGGCCTTAGTGATTACACGTTGTATCAATGATGATCGACAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGAACGAAGAAGATTGCCAGTAC                                                                                                                           <  SRR3722130.767621/128‑1 (MQ=60)
                    CATAAAAAAGGCCGCTTACGCGGCCTTAGTGATTACACGTTGTATCAATGATGATCGACAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGAACGAAGAAGATTGCCAGTACCG                                                                                                                         >  SRR3722130.385819/1‑151 (MQ=60)
                          gctcggagatgtgtataagagacaGATTACACGTTGTATCAATGATGATCGACAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGGACGAAGAAGATTGCCAGTACCGTTGCGG                                                                                                                   <  SRR3722130.530254/127‑1 (MQ=60)
                                      gtataagagacaGATTACACGTTGTATCAATGATGATCGACAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGAACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGC                                                                                                       <  SRR3722130.218054/139‑1 (MQ=60)
                                        gccttagtctcgtgggctcggagatgtgtataagagacagGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGAACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCC                                                                                                     <  SRR3722130.773802/111‑1 (MQ=60)
                                        aagacggcatacgatattcgccttagtctcgtgggctcggagatgtgtataagagacagCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGGACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCC                                                                                                     <  SRR3722130.228764/92‑1 (MQ=60)
                                                GTGATTACACGTTGTATCAATGATGATCGACAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGGACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACC                                                                                             >  SRR3722130.467951/1‑151 (MQ=60)
                                                       gctcggagatgtgtataagagacagGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGGACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCT                                                                                      <  SRR3722130.833719/126‑1 (MQ=60)
                                                       CACGTTGTATCAATGATGATCGACAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGGACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCT                                                                                      <  SRR3722130.287961/151‑1 (MQ=60)
                                                         aagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagAAGCGGCGGCGAACCACCACAAAGAATACCGGAACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTAC                                                                                    <  SRR3722130.607474/92‑1 (MQ=60)
                                                         CGTTGTATCAATGATGATCGACAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGGACGAAGAAGATTGCCAGTACCGTTGCGGctgtctcttatacacatctccgagcccacg                                                                                     >  SRR3722130.224592/1‑120 (MQ=60)
                                                         CGTTGTATCAATGATGATCGACAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGGACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTAC                                                                                    <  SRR3722130.375594/151‑1 (MQ=60)
                                                            TGTATCAATGATGATCGACAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGAACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTACTG                                                                                  <  SRR3722130.282055/150‑1 (MQ=60)
                                                                     agatgtgtataagagacagGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGGACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTACTGCGTTCTGCGC                                                                        <  SRR3722130.391302/132‑1 (MQ=60)
                                                                        GATCGACAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGAACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACctgtctcttatacacatctccgagccc                                                                     >  SRR3722130.607380/1‑124 (MQ=60)
                                                                              CAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGGACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCtgtctcttatacacatctccgagcccacg                                                                >  SRR3722130.123316/1‑121 (MQ=60)
                                                                              CAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGAACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTACTGCGTTCTGCGCGCCGGAACC                                                               >  SRR3722130.364975/1‑151 (MQ=60)
                                                                              CAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGAACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTACTGCGTTCTGCGCGCCGGAACC                                                               >  SRR3722130.317117/1‑151 (MQ=60)
                                                                              CAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGAACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTACTGCGTTCTGCGCGCCGGAACC                                                               >  SRR3722130.45471/1‑151 (MQ=60)
                                                                              CAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGAACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTACTGCGTTCTGCGCGCCGGAACC                                                               >  SRR3722130.612044/1‑151 (MQ=60)
                                                                                GTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGGACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTACTGCGTTCTGCGCGCCGGAACC                                                               >  SRR3722130.660075/1‑149 (MQ=60)
                                                                                GTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGGACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTACTGCGTTCTGCGCGCCGGAACC                                                               >  SRR3722130.69658/1‑149 (MQ=60)
                                                                                GTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGGACGAAGAAGATTGCCAGTACCGTTGCGGCCACCATCCCGCCCATTACACCGGTACCTACTGCGTTCTGCGCGCCGGAACC                                                               >  SRR3722130.794340/1‑149 (MQ=60)
                                                                                GTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGAACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTACctgtctcttatacacatctacg                                                              >  SRR3722130.670587/1‑128 (MQ=60)
                                                                                                 ATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGGACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTACTGCGTTCTGCGCGCCGGAACCAGCACCAGTACTGATAAC                                             <  SRR3722130.516249/150‑1 (MQ=60)
                                                                                                              CGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGGACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTACTGCGTTCTGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGC                               <  SRR3722130.65373/151‑1 (MQ=60)
                                                                                                                    AAGCGGCGGCGAACCACCACAAAGAATACCGGGACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctgc                         >  SRR3722130.155699/1‑90 (MQ=60)
                                                                                                                        GGCGGCGAACCACCACAAAGAATACCGGAACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACC                                                                                             <  SRR3722130.422601/79‑1 (MQ=60)
                                                                                                                                           GAATACCGGGACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTACTGCGTTCTGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGG  <  SRR3722130.437114/151‑1 (MQ=60)
                                                                                                                                           GAATACCGGGACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTACTGCGTTCTGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGG  <  SRR3722130.136584/151‑1 (MQ=60)
                                                                                                                                           GAATACCGGGACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTACTGCGTTCTGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGG  <  SRR3722130.504086/151‑1 (MQ=60)
                                                                                                                                           GAATACCGGAACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTACTGCGTTCTGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCtgtctcttatacacatctccgagcccac  >  SRR3722130.74431/1‑123 (MQ=60)
                                                                                                                                           GAATACCGGAACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTACTGCGTTCTGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGG  >  SRR3722130.599432/1‑151 (MQ=60)
                                                                                                                                                    |                                                                                                                                             
CTTAATGTTCGTAGGTTATGCATAAAAAAGGCCGCTTACGCGGCCTTAGTGATTACACGTTGTATCAATGATGATCGACAGTATGGCTGTGCTCGATATCTTCATTCTTGCGGCTAAAGCGGCGGCGAACCACCACAAAGAATACCGGAACGAAGAAGATTGCCAGTACCGTTGCGGTCACCATCCCGCCCATTACACCGGTACCTACTGCGTTCTGCGCGCCGGAACCAGCACCAGTACTGATAACCAGCGGCATAACGCCGAGGATAAACGCCAGCGAGGTCATCAGG  >  NZ_CP009273/476646‑476935

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑