Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I175 R1
|
328 |
64.7 |
2582366 |
96.2% |
2484236 |
120.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
518,671 |
(T)9→8 |
intergenic (+385/‑46) |
ybbP → / → rhsD |
ABC transporter permease/rhs element protein RhsD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 518,663 | 0 | T | . | 98.0%
| 218.0
/ ‑1.9
| 51 | intergenic (+377/‑54) | ybbP/rhsD | ABC transporter permease/rhs element protein RhsD |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base . (28/22); total (29/22) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.94e-01 |
TGCTAAAAATGTTAGTTTAATAAAATATTGAAAGTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTATTTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGCAGGTGT > NZ_CP009273/518538‑518793
|
tgCTAAAAATGTTAGTTTAATAAAATATTGAAAGTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGc > 2:916892/1‑138 (MQ=255)
cTAAAAATGTTAGTTTAATAAAATATTGAAAGTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTaa > 2:1066988/1‑139 (MQ=255)
aaaaTGTTAGTTTAATAAAATATTGAAAGTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAaca > 1:1168554/1‑138 (MQ=255)
ataaAATATTGAAAGTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACa < 2:6806/138‑1 (MQ=255)
taaAATATTGAAAGTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAAt < 2:431377/139‑1 (MQ=255)
aaaGTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAgg > 1:920043/1‑139 (MQ=255)
aaGTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAggg < 2:615681/139‑1 (MQ=255)
aGTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAAcaca > 2:802233/1‑113 (MQ=255)
aGTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAAcaca < 1:802233/113‑1 (MQ=255)
gTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCa < 2:758104/139‑1 (MQ=255)
gTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCa < 1:1066988/139‑1 (MQ=255)
aCCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACtt > 1:1251940/1‑139 (MQ=255)
aCCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACtt > 1:803341/1‑139 (MQ=255)
tgttgttgATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGaaaa > 1:152502/1‑139 (MQ=255)
tgttgttgATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGaaaa > 1:2029/1‑139 (MQ=255)
tgttgttgATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGaaaa > 2:699621/1‑139 (MQ=255)
tgttgttgATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGaaaa > 1:367948/1‑139 (MQ=255)
tgttgttgATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGaaaa > 1:689126/1‑139 (MQ=255)
tgttgttgATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑‑TTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAAc > 1:721484/1‑139 (MQ=255)
ttgattgaGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑‑TTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAgcg < 2:721484/139‑1 (MQ=255)
attgaGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAgcgg < 2:689126/138‑1 (MQ=255)
tAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGgaga < 2:244586/139‑1 (MQ=255)
aGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGata < 2:1057382/139‑1 (MQ=255)
tgtgtgAAAATTATATAAATACAGTAGCTGGTCTTGTGTGTCTTTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCTCTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGa < 1:532365/136‑1 (MQ=255)
aaaaaTATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTa < 1:916892/139‑1 (MQ=255)
aaaaaTATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTa > 1:938649/1‑139 (MQ=255)
aaTACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCa < 2:152502/139‑1 (MQ=255)
ttAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGata < 1:1050255/51‑1 (MQ=255)
ttAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGata > 2:1050255/1‑51 (MQ=255)
tAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCa > 1:527055/1‑132 (MQ=255)
tAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCa < 2:527055/132‑1 (MQ=255)
ggTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGa > 1:535397/1‑109 (MQ=255)
ggTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGa < 2:535397/109‑1 (MQ=255)
gTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTTTCCAGGGTTc > 1:413977/1‑139 (MQ=255)
gTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTc > 1:1075993/1‑139 (MQ=255)
tCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGc > 1:520499/1‑76 (MQ=255)
tCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGc < 2:520499/76‑1 (MQ=255)
tCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGGTCg > 1:1209887/1‑139 (MQ=255)
cTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCCGGGTTCgg > 2:889979/1‑139 (MQ=255)
gtgtgtCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGc < 2:995080/137‑1 (MQ=255)
gtgtgtCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGc < 2:938649/137‑1 (MQ=255)
gtgtgtCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGCAg > 1:22647/1‑139 (MQ=255)
tgtgtCATTTTATTTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGGTCGGCAg > 1:909437/1‑139 (MQ=255)
tCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCCATGTCCAGGGGTCGGCAGgggt > 2:659269/1‑138 (MQ=255)
tCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGc > 1:262057/1‑132 (MQ=255)
tCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGc < 2:262057/132‑1 (MQ=255)
cATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAg < 1:1014164/87‑1 (MQ=255)
cATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAg > 2:1014164/1‑87 (MQ=255)
cATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCCGGGGTCGGCAGgggt > 2:702502/1‑137 (MQ=255)
cATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGc < 1:379826/131‑1 (MQ=255)
cATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGc > 2:379826/1‑131 (MQ=255)
tttta‑ttttTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGcgcg > 1:1210317/1‑81 (MQ=255)
tttta‑ttttTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGcgcg < 2:1210317/81‑1 (MQ=255)
|
TGCTAAAAATGTTAGTTTAATAAAATATTGAAAGTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTATTTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGCAGGTGT > NZ_CP009273/518538‑518793
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CATCTGTGCTAAAAATGTTAGTTTAATAAAATATTGAAAGTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTATTTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGCAGGTGTAAGAATTGGCGCGCCCACCGGCGT > NZ_CP009273/518532‑518817
|
CATCTGTGCTAAAAATGTTAGTTTAATAAAATATTGAAAGTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACAC > SRR3722129.1184837/1‑150 (MQ=60)
gtgtataagagacagAAAATATTGAAAGTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAAC < SRR3722129.813813/135‑1 (MQ=60)
tttttttttttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAAC < SRR3722129.1064999/73‑1 (MQ=60)
ATAAAATATTGAAAGTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGG > SRR3722129.933132/1‑151 (MQ=60)
TATTGAAAGTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTT > SRR3722129.814928/1‑151 (MQ=60)
TATTGAAAGTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTT > SRR3722129.1269363/1‑151 (MQ=60)
AGTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAG < SRR3722129.1081957/151‑1 (MQ=60)
GTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAAC > SRR3722129.154634/1‑151 (MQ=60)
GTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAAC > SRR3722129.2057/1‑151 (MQ=60)
GTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAAC > SRR3722129.699292/1‑151 (MQ=60)
GTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAAC > SRR3722129.373333/1‑151 (MQ=60)
GTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑‑TTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACC > SRR3722129.732062/1‑151 (MQ=60)
cgccttagtctcgtgggctcggagatgtgtataagagacaGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGAC < SRR3722129.1028481/110‑1 (MQ=60)
AAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTAT > SRR3722129.951955/1‑151 (MQ=60)
TTGTGTGAAAATTATATAAATACAGTAGCTGGTCTTGTGTGTCTTTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCTCTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGC < SRR3722129.540131/150‑1 (MQ=60)
GAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCA < SRR3722129.929934/151‑1 (MQ=60)
TATAAATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCCG > SRR3722129.534756/1‑151 (MQ=60)
ATACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCctgtctcttatacacatctc > SRR3722129.543220/1‑131 (MQ=60)
TACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCCTTGTCCAGGGTTCG > SRR3722129.1091070/1‑151 (MQ=60)
TACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTTTCCAGGGGTCG > SRR3722129.420014/1‑151 (MQ=60)
ACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgc > SRR3722129.528102/1‑98 (MQ=60)
ACATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGGTCGG > SRR3722129.1226755/1‑151 (MQ=60)
CATTAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTtcccttgttccggggtcggg > SRR3722129.218018/1‑131 (MQ=60)
TAGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGCAGG > SRR3722129.22931/1‑151 (MQ=60)
AGCTGGTCTTGTGTGTCATTTTATTTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGGTCGGCAGG > SRR3722129.922317/1‑151 (MQ=60)
AGCTGGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaaaaaagaagcacaactc > SRR3722129.932496/1‑54 (MQ=60)
GGTCTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGCAGGGGTA > SRR3722129.265755/1‑150 (MQ=60)
CTTGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATActgtctcttatacacatctccgagcccacgagactaaggcgaatctcg > SRR3722129.1227192/1‑103 (MQ=60)
TGTGTGTCATTTTA‑TTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGCAGGTGTAAGAA < SRR3722129.385383/149‑1 (MQ=60)
TTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGCAGGTGTAAGAATTGGCGCGCCCACCGGCGT < SRR3722129.559562/150‑1 (MQ=60)
|
CATCTGTGCTAAAAATGTTAGTTTAATAAAATATTGAAAGTGACCTGTAATAACAGTTGTTGTTGATTGAGAACAAATAAGTTTATGTGAAAAATATATAAATACATTAGCTGGTCTTGTGTGTCATTTTATTTTTTTTTGTTGCTAACACAGGGATATGAACAATAACTAAAAGGGCACTTTATATGAGCGGAAAACCAGCGGCGCGTCAGGGAGATATGACTCAGTATGGCGGTCCCATTGTCCAGGGTTCGGCAGGTGTAAGAATTGGCGCGCCCACCGGCGT > NZ_CP009273/518532‑518817
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
