Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I175 R1
|
328 |
64.7 |
2582366 |
96.2% |
2484236 |
120.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
528,392 |
C→A |
intergenic (+3/‑75) |
allA → / → allR |
ureidoglycolate lyase/HTH‑type transcriptional repressor AllR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 528,392 | 0 | C | A | 100.0%
| 229.1
/ NA
| 57 | intergenic (+3/‑75) | allA/allR | ureidoglycolate lyase/HTH‑type transcriptional repressor AllR |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (24/33); total (24/33) |
ACCATCGTAACGTCTGGCATCACCCACTTTTCGCCTGGCAGCGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGCCTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGACAGGCGGAGCCTGTGGCACAGAAGGGC > NZ_CP009273/528259‑528526
|
aCCATCGTAACGTCTGGCATCACCCACTTTTCGCCTGGCAGCGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGc > 1:1066205/1‑138 (MQ=255)
cATCGTAACGTCTGGCATCACCCACTTTTCGCCTGGCAGCGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAAc > 1:252529/1‑139 (MQ=255)
gTAACGTCTGGCATCACCCACTTTTCGCCTGGCAGCGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGAc > 2:395702/1‑139 (MQ=255)
gTAACGTCTGGCATCACCCACTTTTCGCCTGGCAGCGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGAc < 2:580954/139‑1 (MQ=255)
gTAACGTCTGGCATCACCCACTTTTCGCCTGGCAGCGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGAc < 1:926808/139‑1 (MQ=255)
tAACGTCTGGCATCACCCACTTTTCGCCTGGCAGCGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACt > 2:1225852/1‑139 (MQ=255)
cGTCTGGCATCACCCACTTTTCGCCTGGCAGCGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGc < 2:25642/139‑1 (MQ=255)
tCACCCACTTTTCGCCTGGCAGCGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTCGCGTGACGACTGCAACCGACTTGCATAAGATaa < 2:1100782/139‑1 (MQ=255)
cTTTTCGCCTGGCAGCGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAAtt > 1:568640/1‑139 (MQ=255)
cTTTTCGCCTGGCAGCGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAAtt < 2:166266/139‑1 (MQ=255)
gCCTGGCAGCGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCa < 1:967144/138‑1 (MQ=255)
gcgTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCt < 1:396198/139‑1 (MQ=255)
ttCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGt < 1:1225852/138‑1 (MQ=255)
ttCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGt < 2:41913/138‑1 (MQ=255)
ttCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGt < 1:896736/138‑1 (MQ=255)
aCCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTg > 2:253563/1‑128 (MQ=255)
aCCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTg < 1:253563/128‑1 (MQ=255)
tcgatcgCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGt < 2:665309/111‑1 (MQ=255)
tcgatcgCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGt > 1:665309/1‑111 (MQ=255)
cgatcgCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACg > 1:1182036/1‑139 (MQ=255)
cgatcgCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCATGACGACTGCAACCGACTTGCa < 2:1110736/86‑1 (MQ=255)
cgatcgCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCATGACGACTGCAACCGACTTGCa > 1:1110736/1‑86 (MQ=255)
atcgCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAg < 1:325103/131‑1 (MQ=255)
atcgCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAg > 2:325103/1‑131 (MQ=255)
aCAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGAc < 1:1040625/132‑1 (MQ=255)
aCAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGAc > 2:1040625/1‑132 (MQ=255)
aCAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGt > 1:860483/1‑138 (MQ=255)
ttGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCgg < 1:683515/138‑1 (MQ=255)
ttGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCgg < 1:1016882/138‑1 (MQ=255)
ttGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCgg < 2:847342/138‑1 (MQ=255)
gAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAg > 1:1211989/1‑139 (MQ=255)
aaaGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCgg < 1:1101359/135‑1 (MQ=255)
aaaGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCgg > 2:1101359/1‑135 (MQ=255)
aaGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGc < 2:1066205/139‑1 (MQ=255)
aTTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATTAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGAc > 1:761528/1‑112 (MQ=255)
aTTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATTAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGAc < 2:761528/112‑1 (MQ=255)
ttCCTGAACAGGAACTCTGTTTTGCGTGACGACTGGAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGa < 1:832504/139‑1 (MQ=255)
ttCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGa < 1:5241/139‑1 (MQ=255)
ttCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGa < 2:1211989/139‑1 (MQ=255)
tCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGa > 2:802697/1‑138 (MQ=255)
tCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGa > 2:5241/1‑138 (MQ=255)
tCCTAAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGa > 2:119775/1‑138 (MQ=255)
aaCAGGAACTCTGTTTTGCGTGACGACTGCAACCGAc < 1:624818/37‑1 (MQ=255)
aaCAGGAACTCTGTTTTGCGTGACGACTGCAACCGAc > 2:624818/1‑37 (MQ=255)
aaCAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGACAGGCg < 2:740855/139‑1 (MQ=255)
cAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGa > 2:918699/1‑131 (MQ=255)
cAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGa < 1:918699/131‑1 (MQ=255)
cAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGACAGGCGGa < 1:25333/139‑1 (MQ=255)
ggAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCa > 2:55730/1‑38 (MQ=255)
ggAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCa < 1:55730/38‑1 (MQ=255)
gAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGAc < 2:326850/100‑1 (MQ=255)
gAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGAc > 1:326850/1‑100 (MQ=255)
gAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCgg < 1:733143/118‑1 (MQ=255)
gAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCgg > 2:733143/1‑118 (MQ=255)
aCTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGACAGGCGGAGCCtg < 1:470063/139‑1 (MQ=255)
ttttGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGACAGGCGGAGCCTGTGGca < 2:860483/138‑1 (MQ=255)
cGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGACAGGCGGAGCCTGTGGCACAGAAg > 1:580267/1‑139 (MQ=255)
gacgacTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGACAGGCGGAGCCTGTGGCACAGAAGGgc > 1:642203/1‑139 (MQ=255)
gacgacTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGACAGGCGGAGCCTGTGGCACAGAAGGgc > 1:459184/1‑139 (MQ=255)
|
ACCATCGTAACGTCTGGCATCACCCACTTTTCGCCTGGCAGCGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGCCTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGACAGGCGGAGCCTGTGGCACAGAAGGGC > NZ_CP009273/528259‑528526
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGGAGTGAATTACCATCGTAACGTCTGGCATCACCCACTTTTCGCCTGGCAGCGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGCCTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGACAGGCGGAGCCTGTGGCACAGAAGGGCG > NZ_CP009273/528248‑528527
|
GGGAGTGAATTACCATCGTAACGTCTGGCATCACCCACTTTTCGCCTGGCAGCGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCA > SRR3722129.1081163/1‑150 (MQ=60)
GAGTGAATTACCATCGTAACGTCTGGCATCACCCACTTTTCGCCTGGCAGCGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACC > SRR3722129.256092/1‑151 (MQ=60)
CGTAACGTCTGGCATCACCCACTTTTCGCCTGGCAGCGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGAT < SRR3722129.939969/151‑1 (MQ=60)
tttatgtttctttgtttttttttttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGAT < SRR3722129.634104/59‑1 (MQ=60)
ttgtgtttttttttttttttttttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACT < SRR3722129.56459/60‑1 (MQ=60)
GGCATCACCCACTTTTCGCCTGGCAGCGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTG > SRR3722129.577062/1‑151 (MQ=60)
CGCCTGGCAGCGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCT < SRR3722129.980843/150‑1 (MQ=60)
CGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGT < SRR3722129.401965/151‑1 (MQ=60)
GCCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGT < SRR3722129.257146/151‑1 (MQ=60)
TTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTctgtctcttatacacatc > SRR3722129.675162/1‑133 (MQ=60)
TTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGT > SRR3722129.1198485/1‑151 (MQ=60)
TTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACG < SRR3722129.909465/150‑1 (MQ=60)
TTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACG < SRR3722129.1242905/150‑1 (MQ=60)
TTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCATGACGACTGCAACCGACTTGCATAAGATAAACTctgtctcttatacacatctccgagcccacgagactaaggcga > SRR3722129.1126249/1‑108 (MQ=60)
GACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGT < SRR3722129.329798/150‑1 (MQ=60)
CGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTT > SRR3722129.872748/1‑150 (MQ=60)
CGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGAC < SRR3722129.1055251/151‑1 (MQ=60)
ACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGG > SRR3722129.1228885/1‑151 (MQ=60)
ATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATTAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACctgtctcttatacacat > SRR3722129.772619/1‑134 (MQ=60)
ataagagacagTTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGAC < SRR3722129.743865/140‑1 (MQ=60)
GTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGAC < SRR3722129.693604/150‑1 (MQ=60)
GTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGAC < SRR3722129.1116716/150‑1 (MQ=60)
GTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGAC < SRR3722129.1031240/150‑1 (MQ=60)
ATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGGAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGACAGGCGGAGCC < SRR3722129.844467/151‑1 (MQ=60)
ATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGACAGGCGGAGCC < SRR3722129.5309/151‑1 (MQ=60)
ATTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGACAGGCGGAGCC < SRR3722129.931759/151‑1 (MQ=60)
TTCCTGAACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACctgtctcttatacacatctccgagcccac > SRR3722129.331571/1‑122 (MQ=60)
ACAGGAACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGACAGGCGGAGCCTGTGGCAC < SRR3722129.25656/151‑1 (MQ=60)
AACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGACAGGCGGAGCCTGTGGCACAGAAG < SRR3722129.476898/151‑1 (MQ=60)
ACTCTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGACAGGCGGAGCCTGTGGCACAGAAGG > SRR3722129.588834/1‑151 (MQ=60)
CTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGACAGGCGGAGCCTGTGGCACAGAAGGGCG > SRR3722129.465864/1‑151 (MQ=60)
CTGTTTTGCGTGACGACTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGACAGGCGGAGCCTGTGGCACAGAAGGGCG > SRR3722129.651782/1‑151 (MQ=60)
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GGGAGTGAATTACCATCGTAACGTCTGGCATCACCCACTTTTCGCCTGGCAGCGCGTCACCGATTTTCTGACCATCGATCGCGGCGGCAGTGACAACTGTGATGTTGAAAGTATTCCTGAACAGGAACTCTGTTTTGCGTGACGCCTGCAACCGACTTGCATAAGATAAACTAATTGTTCATTGTTTATGCTCACTTGTAGGTCGGAGTTAACGTAGGTATGACGGAAGTTAGACGGCGCGGCAGGCCAGGACAGGCGGAGCCTGTGGCACAGAAGGGCG > NZ_CP009273/528248‑528527
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
