Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I175 R1
|
328 |
64.7 |
2582366 |
96.2% |
2484236 |
120.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
929,816 |
T→C |
G379G (GGT→GGC) |
ftsK → |
DNA translocase FtsK |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 929,816 | 0 | T | C | 93.8%
| 200.6
/ 4.2
| 65 | G379G (GGT→GGC) | ftsK | DNA translocase FtsK |
| Reads supporting (aligned to +/- strand): ref base T (2/2); new base C (29/32); total (31/34) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.36e-01 |
CGCCGGTTGAACCTGTGACTCAGACGCCGCCTGTTGCCTCTGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGTTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTGCAGCTGAACAACCTGCGCAACAGCCGTATTAT > NZ_CP009273/929683‑929942
|
cgcCGGTTGAACCTGTGACTCAGACGCCGCCTGTTGCCTCTGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGTTAcc > 2:582953/1‑138 (MQ=255)
ggTTGAACCTGTGACTCAGACGCCGCCTGTTGCCTCTGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCAcag < 2:676560/139‑1 (MQ=255)
aaCCTGTGGCTCAGACGCCGCCTGTTGCCTCTGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTAGCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTc < 2:560397/139‑1 (MQ=255)
aGACGCCGCCTGTTGCCTCTGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCa < 1:995923/139‑1 (MQ=255)
gACGCCGCCTGTTGCCTCTGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCAcag < 2:1268267/121‑1 (MQ=255)
gACGCCGCCTGTTGCCTCTGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCAcag > 1:1268267/1‑121 (MQ=255)
ccgccTGTTGCCTCTGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTg < 1:1217461/139‑1 (MQ=255)
cTGTTGCCTCTGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGt < 1:1164090/139‑1 (MQ=255)
tGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCcaca < 1:1033991/99‑1 (MQ=255)
tGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCcaca > 2:1033991/1‑99 (MQ=255)
aTGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCa < 1:749876/122‑1 (MQ=255)
aTGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCa > 2:749876/1‑122 (MQ=255)
tGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCg < 1:1005447/139‑1 (MQ=255)
ccACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTg > 2:746943/1‑138 (MQ=255)
cACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGca < 1:1280398/139‑1 (MQ=255)
aCCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTcaca < 1:1098070/99‑1 (MQ=255)
aCCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTcaca > 2:1098070/1‑99 (MQ=255)
aCCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTc > 2:757857/1‑96 (MQ=255)
aCCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTc < 1:757857/96‑1 (MQ=255)
aCCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGcaa > 1:440772/1‑139 (MQ=255)
cTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGcaaca < 1:746943/139‑1 (MQ=255)
gcgcAACCTACAGTAGCGTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCa < 2:1099575/104‑1 (MQ=255)
gcgcAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCa > 1:1099575/1‑104 (MQ=255)
cgcAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCaacaac > 2:145697/1‑138 (MQ=255)
cAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAg > 1:561819/1‑139 (MQ=255)
ccTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTa > 2:1069745/1‑138 (MQ=255)
gCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCgcag < 1:555477/138‑1 (MQ=255)
ccTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCcaca < 2:200579/70‑1 (MQ=255)
ccTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCcaca > 1:200579/1‑70 (MQ=255)
ccTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCAcag < 1:708055/71‑1 (MQ=255)
ccTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCAcag > 2:708055/1‑71 (MQ=255)
ccTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTAc > 2:831248/1‑129 (MQ=255)
ccTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTAc < 1:831248/129‑1 (MQ=255)
ccTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCgcag > 2:555477/1‑137 (MQ=255)
ccTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCgcag > 2:799854/1‑137 (MQ=255)
ccTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCgcag > 2:987821/1‑137 (MQ=255)
ccTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCgcag > 1:122260/1‑137 (MQ=255)
cTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGcagcag < 1:1049364/139‑1 (MQ=255)
cTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGcagcag < 1:736951/139‑1 (MQ=255)
tGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCagcagc > 1:1173384/1‑139 (MQ=255)
tGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCagcagc > 1:261933/1‑139 (MQ=255)
gCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGTTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCagcagc < 1:582953/137‑1 (MQ=255)
gCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCg < 2:921134/139‑1 (MQ=255)
gCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCg > 1:650834/1‑139 (MQ=255)
ggTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTg < 2:613978/139‑1 (MQ=255)
ggTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGAAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTg < 2:425610/139‑1 (MQ=255)
tCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTGCa < 1:799854/139‑1 (MQ=255)
ccACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATg < 2:620411/88‑1 (MQ=255)
ccACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATg > 1:620411/1‑88 (MQ=255)
acaAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTGCAGCt > 2:459123/1‑139 (MQ=255)
acaAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTGCAGCt > 1:120746/1‑139 (MQ=255)
ggAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTGCAGCTGaacaac > 1:1242749/1‑139 (MQ=255)
cGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGACGTATTATGCACCTGCAGCTGAACAACCTgcgc > 1:977992/1‑138 (MQ=255)
ggTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTGCAGCTGAACAACCTGCGCaa < 2:654829/139‑1 (MQ=255)
gTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTg < 1:4467/60‑1 (MQ=255)
gTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTg > 2:4467/1‑60 (MQ=255)
ttGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTGCAGCTGAACAACCTGCGCAACAGc < 2:650834/138‑1 (MQ=255)
cTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTGCAGCTGAACAACCTGCGCAACAGCCGtatta < 2:122260/139‑1 (MQ=255)
cACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTGCAGCTGAACAACCTGCGCAACAGCCGtattat < 1:145697/137‑1 (MQ=255)
ccGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTg < 2:757174/40‑1 (MQ=255)
ccGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTg > 1:757174/1‑40 (MQ=255)
gAAGGTTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCg < 1:890602/57‑1 (MQ=255)
gAAGGTTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCg > 2:890602/1‑57 (MQ=255)
gAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTGCAGCTGAACAACCTGCGCAACAGc < 2:635177/124‑1 (MQ=255)
gAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTGCAGCTGAACAACCTGCGCAACAGc > 1:635177/1‑124 (MQ=255)
|
CGCCGGTTGAACCTGTGACTCAGACGCCGCCTGTTGCCTCTGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGTTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTGCAGCTGAACAACCTGCGCAACAGCCGTATTAT > NZ_CP009273/929683‑929942
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAAGCTGGGCTGCGCCGGTTGAACCTGTGACTCAGACGCCGCCTGTTGCCTCTGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGTTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTGCAGCTGAACAACCTGCGCAACAGCCGTATTATGCCCCTGCGCCAGAACAAC > NZ_CP009273/929671‑929961
|
AAAGCTGGGCTGCGCCGGTTGAACCTGTGACTCAGACGCCGCCTGTTGCCTCTGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCC < SRR3722129.681470/151‑1 (MQ=60)
AGCTGGGCTGCGCCGGTTGAACCTGTGACTCAGACGCCGCCTGTTGCCTCTGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCAC < SRR3722129.934070/151‑1 (MQ=60)
cgtgggctcggagatgtgtataagagacagGTTGCCTCTGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAAT < SRR3722129.1048551/121‑1 (MQ=60)
agacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATA < SRR3722129.718465/93‑1 (MQ=60)
cgtgggctcggagatgtgtataagagacagGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGC < SRR3722129.1113398/121‑1 (MQ=60)
cgtgggctcggagatgtgtataagagacagGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGC < SRR3722129.768901/118‑1 (MQ=60)
CCTGTGACTCAGACGCCGCCTGTTGCCTCTGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATActgtctct > SRR3722129.1285885/1‑143 (MQ=60)
CAGACGCCGCCTGTTGCCTCTGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGC < SRR3722129.1009970/151‑1 (MQ=60)
GCCGCCTGTTGCCTCTGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATAT < SRR3722129.1234416/151‑1 (MQ=60)
gagacagTGCCTCTGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAA < SRR3722129.760823/144‑1 (MQ=60)
CCTGTTGCCTCTGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATG < SRR3722129.1180323/151‑1 (MQ=60)
ttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagCGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGA < SRR3722129.4529/82‑1 (MQ=60)
GTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAAC > SRR3722129.447167/1‑151 (MQ=60)
ATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCctgtctcttatacacatctccgagc > SRR3722129.1114912/1‑126 (MQ=60)
ATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACC < SRR3722129.1019610/151‑1 (MQ=60)
tttttcaagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacaGCTCCTGCACCGGAAGGTTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACC < SRR3722129.903262/80‑1 (MQ=60)
TTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGT > SRR3722129.570157/1‑151 (MQ=60)
CCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTAC < SRR3722129.1298168/151‑1 (MQ=60)
CCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGC < SRR3722129.757854/151‑1 (MQ=60)
ACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtctt > SRR3722129.203384/1‑92 (MQ=60)
ACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAG < SRR3722129.843196/151‑1 (MQ=60)
ACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGC > SRR3722129.123929/1‑149 (MQ=60)
CTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCC > SRR3722129.1189719/1‑151 (MQ=60)
CTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCC > SRR3722129.265630/1‑151 (MQ=60)
ACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGT > SRR3722129.660532/1‑151 (MQ=60)
AGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTA < SRR3722129.563738/150‑1 (MQ=60)
CCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGC < SRR3722129.747742/151‑1 (MQ=60)
CCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGC < SRR3722129.1064096/151‑1 (MQ=60)
GGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGTTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCA < SRR3722129.591562/149‑1 (MQ=60)
CTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACtgtctcttatacacatctccgagcccacgagactaaggcg > SRR3722129.629632/1‑111 (MQ=60)
GTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTGCAGCTG > SRR3722129.122401/1‑151 (MQ=60)
GTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTGCAGCTGAACAACC > SRR3722129.1259997/1‑151 (MQ=60)
GTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTGCAGCTGAACAACC < SRR3722129.811410/151‑1 (MQ=60)
AACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGACGTATTATGCACCTGCAGCTGAACAACCTGCGCA > SRR3722129.991830/1‑150 (MQ=60)
TTGCTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaaaaaaaaa > SRR3722129.768212/1‑62 (MQ=60)
CTCCTGCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTGCAGCTGAACAACCTGCGCAACAGCCGTATTATGCCCtgtc > SRR3722129.644621/1‑147 (MQ=60)
GCACCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTGCAGCTGAACAACCTGCGCAACAGCCGTATTATGCCCCTGCGCC < SRR3722129.147731/149‑1 (MQ=60)
CCGGAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATctgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctgcttgaaaaaaaaaaaacacaaagtcgagggtgacaggg > SRR3722129.239577/1‑51 (MQ=60)
GAAGGCTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTGCAGCTGAACAACCTGCGCAACAGCCGTATTATGCCCCTGCGCCAGAACAAC > SRR3722129.230681/1‑151 (MQ=60)
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AAAGCTGGGCTGCGCCGGTTGAACCTGTGACTCAGACGCCGCCTGTTGCCTCTGTTGATGTTCCACCTGCGCAACCTACAGTAGCCTGGCAGCCTGTACCGGGTCCACAAACGGGAGAGCCGGTTATTGCTCCTGCACCGGAAGGTTACCCACAGCAGTCACAATATGCGCAGCCTGCAGTGCAATATAATGAGCCGCTGCAACAACCAGTACAGCCGCAGCAGCCGTATTATGCACCTGCAGCTGAACAACCTGCGCAACAGCCGTATTATGCCCCTGCGCCAGAACAAC > NZ_CP009273/929671‑929961
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
