Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F5 I175 R1
|
328 |
64.7 |
2582366 |
96.2% |
2484236 |
120.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NZ_CP009273 |
4,630,135 |
A→G |
intergenic (‑12/‑84) |
arcA ← / → BW25113_RS22930 |
two‑component system response regulator ArcA/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NZ_CP009273 | 4,630,135 | 0 | A | G | 100.0%
| 237.4
/ NA
| 62 | intergenic (‑12/‑84) | arcA/BW25113_RS22930 | two‑component system response regulator ArcA/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (28/34); total (28/34) |
ATGCATTTCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCACTTTCCATCAACGTCAACA > NZ_CP009273/4630004‑4630270
|
aTGCATTTCCGTGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGc > 1:1119986/1‑138 (MQ=255)
aTGCATTTCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTg < 2:824906/137‑1 (MQ=255)
aTGCATTTCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGc > 2:34289/1‑138 (MQ=255)
tttCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACt > 1:301955/1‑138 (MQ=255)
cgcCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCg > 1:61750/1‑138 (MQ=255)
cgcCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCg > 1:384810/1‑138 (MQ=255)
aTCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGaaa > 1:595311/1‑137 (MQ=255)
aTCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACa < 1:1081385/139‑1 (MQ=255)
tCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAgg < 2:384810/136‑1 (MQ=255)
ttCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGATGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTAc > 2:51440/1‑138 (MQ=255)
cGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACaa < 2:409659/138‑1 (MQ=255)
gAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACaaa < 1:633139/138‑1 (MQ=255)
gAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACaaa < 2:1119986/138‑1 (MQ=255)
gAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACaaa < 2:1157232/138‑1 (MQ=255)
aCATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTcc < 2:301955/139‑1 (MQ=255)
atAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAc < 2:614267/139‑1 (MQ=255)
atAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAc < 1:883470/139‑1 (MQ=255)
atAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAc < 2:423507/139‑1 (MQ=255)
atAGCCTGCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAc < 2:1140535/139‑1 (MQ=255)
ccTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAcctgc < 2:691627/139‑1 (MQ=255)
tttCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAAtt > 2:826239/1‑138 (MQ=255)
ttCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTaa > 2:255200/1‑139 (MQ=255)
ttCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTaa > 2:214181/1‑139 (MQ=255)
cGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGa < 2:209506/139‑1 (MQ=255)
cGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGa < 2:1108974/139‑1 (MQ=255)
gtgtTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGAt < 1:34289/139‑1 (MQ=255)
gtgtTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGAt < 1:214181/139‑1 (MQ=255)
aCCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACAt > 2:728296/1‑138 (MQ=255)
aCTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAgg > 2:64963/1‑73 (MQ=255)
aCTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAgg < 1:64963/73‑1 (MQ=255)
aCTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACt > 2:1245740/1‑138 (MQ=255)
aCTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACt > 2:998670/1‑138 (MQ=255)
aCTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACt > 2:1123031/1‑138 (MQ=255)
tCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAAc > 2:642458/1‑127 (MQ=255)
tCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAAc < 1:642458/127‑1 (MQ=255)
aCGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAAt < 1:1037896/139‑1 (MQ=255)
aTAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGc > 1:661945/1‑139 (MQ=255)
aGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGt < 1:947275/138‑1 (MQ=255)
aGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGt < 2:411634/138‑1 (MQ=255)
aGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGACCGGCGTAACATGACTAAAGTACGTAATTGCGt < 1:1123031/138‑1 (MQ=255)
tgCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTaa > 2:994620/1‑108 (MQ=255)
tgCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTaa < 1:994620/108‑1 (MQ=255)
gCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGa > 1:521295/1‑67 (MQ=255)
gCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGa < 2:521295/67‑1 (MQ=255)
ggTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGGTCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCGCt < 2:175299/139‑1 (MQ=255)
gTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAc < 1:597237/63‑1 (MQ=255)
gTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAc > 2:597237/1‑63 (MQ=255)
tGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCACTTTc > 1:775439/1‑138 (MQ=255)
gCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGGCCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCACTTTCCa > 1:1034053/1‑139 (MQ=255)
gCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCaa > 1:1174757/1‑79 (MQ=255)
gCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCaa < 2:1174757/79‑1 (MQ=255)
tttGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCACTTTCCATCAAc < 2:428863/139‑1 (MQ=255)
tGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGAt < 1:360588/83‑1 (MQ=255)
tGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGAt > 2:360588/1‑83 (MQ=255)
tGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCACTTTCCATCAACGt > 1:309361/1‑139 (MQ=255)
tGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCACTTTCCATCAACGt > 1:260204/1‑139 (MQ=255)
aCCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGt > 2:1092734/1‑111 (MQ=255)
aCCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGt < 1:1092734/111‑1 (MQ=255)
aCCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCACTTTCCATCAACGTcaa > 2:1046389/1‑138 (MQ=255)
ccTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCACTTTCCATCAACGTcaaca < 2:61750/139‑1 (MQ=255)
ccTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCACTTTCCATCAACGTcaaca < 1:1245740/139‑1 (MQ=255)
ccTGAATTGCCAACTAAAACGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCACTTTCCATCAACGTcaaca < 2:1145349/139‑1 (MQ=255)
|
ATGCATTTCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCACTTTCCATCAACGTCAACA > NZ_CP009273/4630004‑4630270
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TATTCAGAGAGGATCTGATGCATTTCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCACTTTCCATCAACGTCAACAACATCATTAGCT > NZ_CP009273/4629987‑4630282
|
TATTCAGAGAGGATCTGATGCATTTCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGA > SRR3722129.836762/1‑150 (MQ=60)
GAGAGGATCTGATGCATTTCCGTGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCC > SRR3722129.1135609/1‑150 (MQ=60)
GATCTGATGCATTTCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTA > SRR3722129.306271/1‑150 (MQ=60)
ATGCATTTCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGA > SRR3722129.62566/1‑150 (MQ=60)
ATGCATTTCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGA > SRR3722129.390437/1‑150 (MQ=60)
ATTTCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAAC > SRR3722129.604122/1‑149 (MQ=60)
CATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAA < SRR3722129.1096537/151‑1 (MQ=60)
acggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAG < SRR3722129.65810/95‑1 (MQ=60)
CGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACC < SRR3722129.642550/150‑1 (MQ=60)
CATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCctgtctcttatacacatctccgagcccacgagactaaggcgaat > SRR3722129.464057/1‑107 (MQ=60)
caagcagaagacggcatacgagattcgccttagtctcgtgggctcggagatgtgtataagagacagGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGC < SRR3722129.606153/85‑1 (MQ=60)
CATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGC < SRR3722129.896057/151‑1 (MQ=60)
agattcgccttagtctcgtgggctcggagatgtgtataagagacaGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACAT < SRR3722129.365790/106‑1 (MQ=60)
CGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACAT < SRR3722129.217166/151‑1 (MQ=60)
CGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACAT < SRR3722129.34715/151‑1 (MQ=60)
ggagatgtgtataagagacagCGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAG < SRR3722129.1008648/130‑1 (MQ=60)
AGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGT < SRR3722129.652040/151‑1 (MQ=60)
CGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCG > SRR3722129.671768/1‑151 (MQ=60)
AACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGA < SRR3722129.1052488/151‑1 (MQ=60)
GATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCtgtctcttatacacatctccgagcccacgagactaaggcgaatctcgtatgccgtcttctg > SRR3722129.528911/1‑90 (MQ=60)
gatgtgtataagagacagGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCAC < SRR3722129.1108007/133‑1 (MQ=60)
AAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCAC < SRR3722129.960671/150‑1 (MQ=60)
AAGAATGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGACCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCAC < SRR3722129.1138696/150‑1 (MQ=60)
TGTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCACTTTCC > SRR3722129.786683/1‑150 (MQ=60)
GTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGGCCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCACTTTCCAT > SRR3722129.1048615/1‑151 (MQ=60)
GTGCGGGGTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCtgtctcttatacacatctccgagcccacgagactaaggcgaatctcgt > SRR3722129.1191112/1‑102 (MQ=60)
GTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCACTTTCCATCAACGTC > SRR3722129.313779/1‑151 (MQ=60)
GTCTGCATGTTTGCTACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCACTTTCCATCAACGTC > SRR3722129.263878/1‑151 (MQ=60)
ACCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCACTTTCCATCAACGTCAACAACATCATTAGC < SRR3722129.1263099/151‑1 (MQ=60)
CCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCACTTTCCATCAACGTCAACAACATCATTAGCT < SRR3722129.825606/151‑1 (MQ=60)
CCTGAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCACTTTCCATCAACGTCAACAACATCATTAGCT < SRR3722129.838113/151‑1 (MQ=60)
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TATTCAGAGAGGATCTGATGCATTTCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGCGTAACATGACTAAAGTACGTAATTGCGTTCTTGATGCACTTTCCATCAACGTCAACAACATCATTAGCT > NZ_CP009273/4629987‑4630282
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
