Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 343 268.7 10873516 97.0% 10547310 150.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC CP009974 2,913,100 Δ2,603 bp RPPX_12970–[RPPX_12980] RPPX_12970, RPPX_12975, [RPPX_12980]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009974 2913100–2915698 2915702 5–2603 244 [2] [0] 243 RPPX_12970–[RPPX_12980] RPPX_12970,RPPX_12975,[RPPX_12980]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009974 = 29130992 (0.010)227 (0.870) 140/286 1.0 99.6% intergenic (+953/+106) RPPX_12965/RPPX_12970 GABA permease/ATPase AAA
?CP009974 2915703 = 0 (0.000)coding (34/267 nt) RPPX_12980 hypothetical protein

GATK/CNVnator alignment

N/A