Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
336 |
367.5 |
14491858 |
96.8% |
14028118 |
150.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009974 |
3,148,563 |
G→A |
intergenic (+90/+122) |
RPPX_14035 → / ← RPPX_14040 |
membrane protein/bifunctional glyoxylate/hydroxypyruvate reductase B |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009974 | 3,148,563 | 0 | G | A | 76.7%
| 449.0
/ 127.6
| 257 | intergenic (+90/+122) | RPPX_14035/RPPX_14040 | membrane protein/bifunctional glyoxylate/hydroxypyruvate reductase B |
| Reads supporting (aligned to +/- strand): ref base G (33/26); new base A (90/104); total (126/131) |
| Fisher's exact test for biased strand distribution p-value = 2.35e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 263 total aligned reads displayed.
GCTGGTGTTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTCACC > CP009974/3148416‑3148712
|
gCTGGTGTTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGCAGAGGc > 2:3276669/1‑151 (MQ=255)
tGGTGTTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCa > 2:870594/1‑151 (MQ=255)
tGGTGTTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCa < 2:5073281/151‑1 (MQ=255)
tGGTGTTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCa < 2:1359314/151‑1 (MQ=255)
tgtTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGca < 1:5130364/151‑1 (MQ=255)
gtTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTGGTGGTCGCCAAATGGTGATGCTGGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGcac < 2:4470177/151‑1 (MQ=255)
gCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCa < 2:1501218/151‑1 (MQ=255)
cAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAc > 1:6124254/1‑151 (MQ=255)
cAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAc > 1:6686175/1‑151 (MQ=255)
ggCCCGGGGCCGGGGGGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTc < 2:4837800/150‑1 (MQ=255)
aGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCGCCTACAGGGCAGTGCACACCCTTTGTAGGCGCGGGTTTACCCGCGACGCTGCCACGAAAGGCACTc > 2:3710723/1‑151 (MQ=38)
ggCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTg > 1:4046979/1‑151 (MQ=255)
gCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGt > 1:176269/1‑151 (MQ=255)
ccAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTa > 1:7056268/1‑151 (MQ=255)
gggTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGa > 1:3738339/1‑151 (MQ=255)
ggTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAg > 1:4133441/1‑151 (MQ=255)
ggTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGGTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAg > 1:3605144/1‑151 (MQ=255)
gTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAAATGTAGGAGc > 1:2770311/1‑151 (MQ=255)
tGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCg < 2:3775976/151‑1 (MQ=255)
tGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCg > 1:824394/1‑151 (MQ=255)
ggCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCgg < 1:6473863/151‑1 (MQ=255)
ggCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCgg > 1:217319/1‑151 (MQ=255)
ggggGTTGTGGGCGCGAAAGAGTGGGGCTGGCGTGGGCCGGCCGTTTCGGGGGTAGGCCCGCTCCTACAGGGCAGTGCACACCCTGTGTAGGGGCGGGTTGACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTAc < 2:5863521/151‑1 (MQ=21)
gtgtTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTAccc < 2:842771/151‑1 (MQ=255)
tgttgtGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGGTTACCcg > 1:3308955/1‑151 (MQ=255)
ggTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAgg > 1:5000488/1‑151 (MQ=255)
gTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGCTTACCCGCGAAggg > 2:3607324/1‑151 (MQ=255)
tCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAgggg < 2:2491342/151‑1 (MQ=255)
tCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGGTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTCTAGGAGCGGGTTTACCCGCGAAgggg > 1:3441507/1‑151 (MQ=255)
gCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGcc < 1:3963159/151‑1 (MQ=255)
gCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACGCCACAAAGTAGGACCGGGCCGACCCGCGAAGGGGcc > 2:3836904/1‑151 (MQ=25)
ccAAATGGTGATGCTGGCCTGGGCTGGCCCTTTTGCGGGTCCCCGTGCTCCTGGAGGGCAGTGCTCTCGCTTTGGGCGAGCGGGTTTAGCGGCGAAGAGGCCAGCACAGGCACTCCAAATTGTTGGAGCGGGTTTACCCGCGAAGGGGccg < 2:2753695/151‑2 (MQ=12)
ccAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGccg > 1:4834514/1‑150 (MQ=255)
cAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGccgg < 2:4266949/151‑3 (MQ=255)
aaaTAGGGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGc < 2:472660/151‑1 (MQ=255)
aTAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGa < 2:151246/123‑1 (MQ=255)
tgtgagccTTGCCGGGGCGGGCCCTTGCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAg < 2:3120428/144‑1 (MQ=21)
aGTGATGCTGGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAg < 2:3327069/151‑1 (MQ=255)
cTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACGCGTTGTAGGAGCGGGGTTACCCGCGGAGGGGCCAGCACAGGCACGCCAAACTGTCGGAGGGGGTTTACCCGCGAAGGGGGCGGCACATGCACTcc > 2:1652527/1‑151 (MQ=25)
ggggCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTg < 2:7093914/150‑1 (MQ=255)
ggccggccCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTa < 2:824253/151‑1 (MQ=255)
ggccggccCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTa < 1:4801033/151‑1 (MQ=255)
ggccggccCTTGCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTa < 2:1201203/151‑1 (MQ=255)
gccCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGc < 1:4325822/151‑1 (MQ=255)
ccTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTACGAGCGGGTTTCACCTCGAAGGGGCCGGCACAGGCACTCCAACTTGTAAGAGCgg > 2:66302/1‑151 (MQ=21)
gttgcgcgGGTAACCCCGCTCCTACAGGGCCGTGCACACCCTTTGTCGGAGCGGGTTTACCCGAGAAGAGGCCAGCACAGGCACTCCAATTTGTAGGAGCGGGTTTAACCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCggt < 1:1183685/147‑2 (MQ=25)
tCGCGGGTAAGCCCGCTCCTACGGGGCAGTGCGCACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGtttt < 2:2177330/151‑1 (MQ=18)
tCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGAACGAGCggttct > 2:200736/1‑147 (MQ=21)
ggcgGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTa < 1:3481393/150‑1 (MQ=21)
cgGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCAGTCCAAATCGTAAGAGCGGTCTTAcc > 2:6510169/1‑151 (MQ=18)
cgGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTAcc < 2:3738339/151‑1 (MQ=21)
cgGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTAcc < 2:1735671/151‑1 (MQ=21)
gggTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAAATGTACGGGCGGTCTTAccc > 1:3272014/1‑151 (MQ=18)
ggTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCcg > 1:6349273/1‑151 (MQ=255)
tAAACCCGCGCCTCCAGGGCAGTGAACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCcgcg < 1:2420575/151‑1 (MQ=21)
aCCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAg < 1:1020491/151‑1 (MQ=21)
gtCCTACAGGGAAGTCCACACCCATGGTAGGGGCGAGTTGAGCAGCGAAGAGGCCAGCACAGACACTACAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGcc < 2:3339201/150‑1 (MQ=17)
cTCGTACAGGGCAGTGCAGTCCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGcc < 1:3072893/151‑1 (MQ=21)
cTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGcc > 1:5333001/1‑151 (MQ=255)
cTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGc > 1:3878970/1‑151 (MQ=21)
aCAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGCTTTACCCGCTAAGGGGCCGGcac > 1:2855938/1‑151 (MQ=21)
cAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGcaca < 1:2949102/151‑1 (MQ=21)
gggCAGTGCGCACCGGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAgg < 1:2471063/151‑1 (MQ=18)
gggCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAgg < 1:2693427/151‑1 (MQ=21)
ggCAGTGCACACCCTTTGGAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGc < 1:5713144/151‑1 (MQ=21)
cAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCggtt < 1:2077476/123‑3 (MQ=18)
cAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTCTTACCCGCGAAGGGGccggcaccggcac > 2:5983323/1‑150 (MQ=18)
aGTGCACACGCTGTGGAGGAGGGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCGAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCact < 2:1269675/151‑3 (MQ=17)
aGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCacc > 2:2878153/1‑149 (MQ=21)
tGCACACCCTTTGTGGGCGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAGATTGGAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTcc < 2:969690/151‑1 (MQ=18)
gCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCCGCACAGGCACTCCa > 2:5495405/1‑151 (MQ=18)
cacaCCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACACGCACTCCaa > 2:305182/1‑151 (MQ=18)
cacaCCCTTTGTAGGAGCGGGCTTACCCGCGAAGAGGCCAGCACAGGCACTCCGAATTGCACGAGCGGGTCTACCCGCCAAGGGACCGGCACAGGCACTCCACATTGTACGAGCGGTTTTACCCGCGGAGTGGCCCGCACAGGCACTCCaa > 2:182499/1‑151 (MQ=25)
acacCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGCCTTACCCGCGAAGGGGACGGCACAGGCACCCCaaa > 2:6734890/1‑151 (MQ=18)
tccaaattGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCaaaa > 1:3802490/7‑151 (MQ=255)
tccaaattGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCaaaa > 1:4196949/7‑151 (MQ=255)
tccaaattGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACGCCaaat > 2:3946663/7‑150 (MQ=18)
acCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGGAGGGGCGGTGTTACCCGCGAAGGTGCCGGCACAGGCACTCCacact > 2:1909470/1‑147 (MQ=17)
caaattGTAGGAGCGGGTTGACCCGCGAAGCGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCaaattg < 2:5612095/147‑4 (MQ=17)
aaattGGAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCaaattgt < 1:6803515/148‑5 (MQ=17)
aattGTAGGGTCGGGTTTGCCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCaaattgta < 1:2380358/149‑6 (MQ=17)
aattGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAGCTGTAGGAGCGGTTGTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGt < 2:6934290/149‑1 (MQ=21)
attGTAGGACCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCaaattgtag < 1:1652527/150‑7 (MQ=17)
ttGGAGGAGCGGTGTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCaaattgtagg < 2:542164/151‑8 (MQ=17)
cgggAGCGGGGTGACCCGGGAGGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTGTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGcc < 2:5000488/149‑1 (MQ=21)
cGGTTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCca > 1:1924514/1‑151 (MQ=255)
gggtgaCCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCcaca < 2:6124254/146‑1 (MQ=255)
ttttACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCacac > 2:2674175/2‑151 (MQ=255)
tttACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACAcc > 2:4135454/1‑151 (MQ=255)
tttACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGa > 2:626972/1‑91 (MQ=14)
ttACCCGCGAAGGGGCCAGCACAGGCAATCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCt < 1:1430855/151‑1 (MQ=255)
aCCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGc > 2:1047468/1‑151 (MQ=255)
ccGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCgg > 2:4891797/1‑151 (MQ=255)
gAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTc > 1:2558982/1‑151 (MQ=255)
gAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACACGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTc > 1:5466733/1‑151 (MQ=255)
aaGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTCa > 1:2776236/1‑151 (MQ=255)
gggggGCGGCGCAGGGACGGCAAATGGTAGGAGCGGTTTTGCCCGCGGAGGGGCCAGCACAGGCACTCGAAATTGTGGGGGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAGCGGTCAGCCCTTCCACACCTGCGGGTTCAc < 2:2439165/150‑1 (MQ=18)
aGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTCAc > 1:313096/1‑151 (MQ=255)
ggggCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTCAcc > 1:898393/1‑151 (MQ=255)
ggggCCGGCACAGGCACTCCAAATTGTAGGAGCGGTCTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGGGCGGGTCTACCCGCGAAGGGGCCAGCACACGCATGCCAAAGCGGTCAGCCCTTCCACACCTGCGGGTTCAcc > 2:5680419/1‑151 (MQ=25)
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GCTGGTGTTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTCACC > CP009974/3148416‑3148712
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
