Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
343 |
268.7 |
10873516 |
97.0% |
10547310 |
150.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009974 |
3,148,563 |
G→A |
intergenic (+90/+122) |
RPPX_14035 → / ← RPPX_14040 |
membrane protein/bifunctional glyoxylate/hydroxypyruvate reductase B |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009974 | 3,148,563 | 0 | G | A | 93.4%
| 571.3
/ 8.0
| 182 | intergenic (+90/+122) | RPPX_14035/RPPX_14040 | membrane protein/bifunctional glyoxylate/hydroxypyruvate reductase B |
| Reads supporting (aligned to +/- strand): ref base G (4/8); new base A (69/100); total (74/108) |
| Fisher's exact test for biased strand distribution p-value = 7.64e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 185 total aligned reads displayed.
TGCTGGTGTTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTCA > CP009974/3148415‑3148710
|
tgCTGGTGTTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAgagg < 1:376040/151‑1 (MQ=255)
tgCTGGTGTTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAgagg < 1:5260421/151‑1 (MQ=255)
tgCTGGTGTTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAgagg < 1:2489552/151‑1 (MQ=255)
ttGGTGCTTCGCAAGCGGTGGGCCGGGGTGGGTGAGGGTGGTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCTGCCCTGTCGCGGTTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGcc < 2:3760184/150‑1 (MQ=37)
tgtTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGca > 1:875114/1‑151 (MQ=255)
tgtTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGGTTAACCCCGGAGAGGCCCGca > 2:1224786/1‑151 (MQ=39)
tttCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGcaca < 1:2786834/151‑1 (MQ=255)
tttCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGcaca < 1:2550538/151‑1 (MQ=255)
tCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAgg > 2:5289924/1‑151 (MQ=255)
cGCAAGCCCCGGGCGAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGc < 1:656054/151‑1 (MQ=255)
cGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGCAGAGGCCAGCACAGGc > 1:4807652/1‑151 (MQ=255)
cGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGc > 2:1878383/1‑151 (MQ=255)
cGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGc > 2:4706398/1‑151 (MQ=255)
gCAAGCGCCGGGCGGGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGAGGCTTGCCTGGGCCGGCCCTCTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCa < 1:2622546/151‑1 (MQ=37)
cAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCATTTCGCGGGTAAACCCGCTCCTACAGGCAAGTGCACCCCCGTTTTAGTAGCGGGTTGACTCGCGAAGACACCAGCACAgaacc > 2:534533/1‑147 (MQ=37)
gCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTGGGGGGTATAGCCGCACCTCCAGGTCGGTGAACACCTGTTGTGGGAGCGGGTGTACGTGCGGAGATGCCAGCACAGGcgatgg > 2:2139348/1‑146 (MQ=255)
gCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTcc > 2:2041182/1‑151 (MQ=255)
cccGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTCTAGGAGCGGGTCTACCAGCGCAGAGGCCAGCCCAGGCCCACCaa > 2:1518792/1‑151 (MQ=38)
cccGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTCTGTAGGAGCGGGGTTACCCGCGAAGAGGCCAGCACAGGCACTCCaa > 2:4929619/1‑151 (MQ=255)
ccGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCaaa > 1:3355870/1‑151 (MQ=255)
cGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGACCAGCACAGGCACTCCAAAt > 1:128486/1‑151 (MQ=255)
gggCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAAtt < 1:5394478/151‑1 (MQ=255)
gggCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTCTGTAGGAGCGGGCTTACACGCGAAGAGGCCCGCCCAGGCACACCaaaga > 1:1450409/1‑149 (MQ=37)
ggcggggTGGCTGAGGGTGTTGTGGTCGCCAGATAGTGATGCTTGCCTGGGCCGGGCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGt < 2:4731586/147‑1 (MQ=255)
ggggtgggtGAGGCGGTTGTGGTGGCGAAATAGTGATGGTGGCCTGGGCCGGCAGTTTCGCGGGTGAACCCGCTAGTACGGGGCAGTGGACACCCGTGGGAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAgg < 2:2338560/150‑1 (MQ=21)
aGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAgg < 1:4863098/151‑1 (MQ=255)
gttgaGGGTGTTGTGGCCGGCAAATAGTGATGCTTGCGTGGGCCGGCGCTTTCGCGGTTAAACCCGCTCGTACAGGGCAGTGCACACCCTGTGTAGGATCGGGTTTACCCGCGAAGAGGGCAGCACAGGCACTCCAAATTGTAGGAGCGGg > 2:3733329‑M2/3‑150 (MQ=255)
ttgAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgt > 1:2464258‑M2/2‑149 (MQ=255)
tGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTGCCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgat < 2:3875329‑M2/151‑4 (MQ=255)
gAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgttt < 1:1001669‑M2/151‑5 (MQ=255)
aGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttc < 1:5228726‑M2/151‑6 (MQ=255)
aGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgttta < 1:3375670‑M2/151‑6 (MQ=255)
gggTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGGGGctttac < 1:3230288‑M2/151‑7 (MQ=255)
gggTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttac < 2:4489172‑M2/151‑7 (MQ=255)
gggTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGggttac < 2:2472067‑M2/151‑7 (MQ=255)
gttgtGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGGTCCGACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATGGTAGGAGCGGggttacccgc < 1:1174686‑M2/151‑11 (MQ=255)
ttggTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaa > 1:2933013‑M2/2‑138 (MQ=255)
ggcgcCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGGCAGTGCACACCCTTTGTAGGCGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggg > 2:3282885‑M2/3‑135 (MQ=255)
gTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGGAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggg > 2:2032611‑M2/1‑135 (MQ=255)
ctatgagttatGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccgg > 2:1404252‑M2/6‑130 (MQ=255)
gaagAGTGGTGCTTGCGGGGGCCGGCCCTTTCGCGGGTAAGCCCGCTCCGACAGGGCAGTGCACGCCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggc > 2:1047985‑M2/2‑129 (MQ=255)
aaTAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAACTGTAGGAGCGGgtctacccgcgaaggggccagcc < 2:2919244‑M2/151‑24 (MQ=255)
tAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttaccctcgaagcggccggcacc < 1:4972492‑M2/151‑26 (MQ=255)
gggatGCTTGCCTGGTCCGGCCCTTTCGCGGATAAACCCGCTCCTACAGGGCAGTGCACGCCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacagg > 1:5040708‑M2/3‑124 (MQ=255)
gTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGCGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacagg > 1:4403740‑M2/1‑124 (MQ=255)
gTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacagg < 1:5376592‑M2/151‑28 (MQ=255)
gCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactc > 1:750784‑M2/1‑119 (MQ=255)
ttGCCGGGGCGGGCCTGTGCGCGGGTAAACCCGCTCCTGCAGGGCAGTGCCCACCCTTTGTAGGCGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactcca > 2:5208345‑M2/1‑117 (MQ=255)
tGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattg < 1:2049319‑M2/151‑40 (MQ=255)
gccgtccCTTTCGGGGGTAACCCCGGTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtag > 1:3529605‑M2/1‑109 (MQ=255)
gccggccgTTGCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtag > 2:2612925‑M2/1‑109 (MQ=255)
ccggccCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGACCGGgtttacccgcgaaggggccggcacaggcactccaaattgtagg < 2:3526316‑M2/151‑44 (MQ=255)
tttCGCGGGTAAGCCCGCTCCTACAGGGCAGTGCACGCCCTTTGTGGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggtt > 2:2373509‑M2/1‑101 (MQ=255)
tCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttatccgcgaaggggcctgtacaggcactgcaaagtgttggagcggcttt < 2:1946852‑M2/151‑53 (MQ=255)
tCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGttt > 1:1303877/1‑151 (MQ=255)
aaaCCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcga < 1:1974371‑M2/151‑61 (MQ=255)
aaaCCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcgggtttacccgcga < 1:5298151‑M2/151‑61 (MQ=255)
ccGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgcttacccgcggaggggccggcacaggcaccccacactgcaggagcggccctacccgcgacgtg < 2:2611649‑M2/151‑65 (MQ=255)
ccGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggg < 1:4873559‑M2/151‑65 (MQ=255)
cGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaagggg < 1:1779046‑M2/151‑66 (MQ=255)
cTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggcc > 1:4857828‑M2/1‑84 (MQ=255)
cTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccagcacaggcactcaaaattggacgagccgttctacccgcgaagcgccc < 2:4443841‑M2/151‑68 (MQ=255)
tCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccg > 1:4706398‑M2/1‑83 (MQ=255)
ccctACAGGACAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccg > 1:951695‑M2/2‑83 (MQ=255)
ccTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccgg < 1:2330615‑M2/151‑70 (MQ=255)
tccagggcagggcaCCCCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggca > 1:2904008‑M2/3‑80 (MQ=255)
gagGGGGGTGGACACCCGTTGTAGGGGCGGGTTTAGCCGCGAAGAGGCCAGCACAGGCACTCCAAAGTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttgcccgcgaaggggccggcaca > 1:3451093‑M2/2‑78 (MQ=255)
gCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggca < 2:757511‑M2/151‑78 (MQ=255)
ggggcacACCCTTGGTAGGAGCGGGTTTAACCGCGAAGAGGCCAGCACAGGCACTACAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcact > 2:692993‑M2/4‑72 (MQ=255)
aGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggtcttacccgcgaaggggccggcgcaggcacc < 2:4282037‑M2/151‑80 (MQ=255)
gTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggtcttacccgcgaaggggccggcacaggccctc < 2:5389383‑M2/151‑81 (MQ=255)
gCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttac < 2:4437433‑M2/123‑55 (MQ=255)
gCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttac < 2:4437059‑M2/123‑55 (MQ=255)
gCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttac > 1:4437059‑M2/1‑69 (MQ=255)
gCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttac > 1:4437433‑M2/1‑69 (MQ=255)
tccaaattGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCACTCCaaaa > 1:86720/7‑151 (MQ=255)
cccccTTTGTGAGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCaaaa < 2:1303877/149‑1 (MQ=255)
cccTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaatggtaggagcggctttacccgcgaaggggccggcacaggcacaccaaattg < 1:1667044‑M2/151‑88 (MQ=255)
cccTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccagcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaactcc < 2:2699610‑M2/151‑88 (MQ=255)
tttGTAGGAGCGGGGTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtag > 1:1550411‑M2/1‑61 (MQ=255)
ttGTAGGAGCGGTTTTACCCGCGAAGGGGCCGGCACAGGCCCTCCAAATTCTAGAAGCAGTGTTACCGGCGAAGGGGCCAGCACAGGCACTCCAACTTGCATGAGCTGGCGCACCCGCGACGCGTCCCGCACAGACACTCCAAAACGGGCa > 2:1457883/1‑151 (MQ=9)
ttGAAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCa < 1:4578569/151‑1 (MQ=255)
tAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCCAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaagtgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggagc < 1:3495198‑M2/151‑95 (MQ=255)
gAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCgg < 2:1739419/54‑1 (MQ=35)
gAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtagtagcggg < 1:2700338‑M2/151‑98 (MQ=255)
aGCGGGTTTTCCGGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTc < 1:3875329/151‑1 (MQ=255)
aGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggagcggtt < 1:1030185‑M2/151‑99 (MQ=255)
aGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggagcggtt < 1:138215‑M2/151‑99 (MQ=255)
aGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggagcggtt < 1:906909‑M2/151‑99 (MQ=255)
cggtcatACCCACAAAGGGGCCAGCACAGGCAATACACATTGTAGGAGCGGTTTTACCAGCGAAGGGGCCAGCACAGGCACTCCAAATAGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCca < 2:2084089/145‑1 (MQ=18)
gttttACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCcaca < 1:4550254/149‑1 (MQ=255)
ttACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccg < 1:211720‑M2/151‑106 (MQ=255)
aCCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcg > 1:2326885‑M2/1‑44 (MQ=255)
aCCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaaatgtaggagcgggcttacccgcg < 2:2943356‑M2/151‑108 (MQ=255)
gcgAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggcgcggctttacccgcgaagg < 1:5393972‑M2/151‑112 (MQ=255)
cgAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttgtacccgcgaaggg < 2:3728391‑M2/151‑113 (MQ=255)
gAGGGGGCCAGCACAGGCACTCCAAATTGGAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgacgggg > 2:4472258‑M2/1‑38 (MQ=255)
gAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggagcgggtttacccgcgaagggg < 2:4587295‑M2/151‑114 (MQ=255)
gAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggagcggctttacccgcgaagggg < 2:2305900‑M2/151‑114 (MQ=255)
aaGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggc > 1:4489172‑M2/1‑37 (MQ=255)
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TGCTGGTGTTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTCA > CP009974/3148415‑3148710
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
