Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
368 |
332.2 |
13092066 |
97.0% |
12699304 |
150.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009974 |
3,148,563 |
G→A |
intergenic (+90/+122) |
RPPX_14035 → / ← RPPX_14040 |
membrane protein/bifunctional glyoxylate/hydroxypyruvate reductase B |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009974 | 3,148,563 | 0 | G | A | 95.8%
| 636.7
/ 0.2
| 193 | intergenic (+90/+122) | RPPX_14035/RPPX_14040 | membrane protein/bifunctional glyoxylate/hydroxypyruvate reductase B |
| Reads supporting (aligned to +/- strand): ref base G (4/4); new base A (76/105); total (82/111) |
| Fisher's exact test for biased strand distribution p-value = 7.24e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 199 total aligned reads displayed.
TGCTGGTGTTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTCAC > CP009974/3148415‑3148711
|
tgCTGGTGTTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTTTAGTAGCGGGTTTACCCGCGAAgagg > 1:3847716/1‑151 (MQ=255)
gCTGGTGTTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGc < 1:4054343/151‑1 (MQ=255)
gCTGGTGTTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGCGCAGTGCACACCCTTTGTAGGCGCGGGTTTACCCGCGAAGAGGc > 2:1473249/1‑151 (MQ=255)
tGGTGTTTCGCAAGCGCCGGGCCAGGGGGGCTGAGGGTGTTGTGGTCGCCAAATAGTGGTGCTTGCCTGGGCCGGCCCTTGCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCa < 2:2855552/151‑1 (MQ=38)
ggTGTTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGGTTACCCGCGCAGGGGCCAg > 1:1564254/1‑151 (MQ=255)
ggTGTTGCGCAAGCGCCGGGCGAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCGCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAg < 2:6430620/151‑1 (MQ=38)
gtgtTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGCAGAGGCCAGc > 2:2059579/1‑151 (MQ=255)
tgtTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGCGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCCCTCCTACAGGTGCGTGCACACCCTTTCTAGGAGCGGGTTTCCCCGCTAAGAGGCCAGca > 2:6153515/1‑151 (MQ=38)
ggtTGCGCAAGCCCCGGGCCAGGGTGGCGGAGGGTGTTGGGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGca < 2:1555723/150‑1 (MQ=255)
gCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCa > 1:6162868/1‑151 (MQ=255)
aaGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCGGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACt < 1:489039/151‑1 (MQ=255)
aGCCCCGGGCGAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCGGGGCCGGCCCTTTCGCGGGTCACCCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTc < 2:4492076/151‑1 (MQ=38)
aGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGGAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGCCACTc > 2:78453/1‑151 (MQ=255)
gCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCCGTGGACACCCGTTGTAAGAGCGGGTTTACCCGCGAAGACGCCAGCACAGACaaccc > 2:5335576/1‑147 (MQ=37)
gCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTcc > 1:638825/1‑151 (MQ=255)
gCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTcc < 2:2395425/151‑1 (MQ=255)
cGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAAt < 1:94051/151‑1 (MQ=255)
cAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAg > 1:324238/1‑151 (MQ=255)
cAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAg > 2:1070232/1‑151 (MQ=255)
gggTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGa < 1:4153397/151‑1 (MQ=255)
gCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGg > 1:2964249‑M2/1‑150 (MQ=255)
gtgtTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgcttaccc < 1:6112306‑M2/151‑9 (MQ=255)
tgttgtGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGTGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccg > 2:2971351‑M2/1‑142 (MQ=255)
gttgtGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgc < 1:431359‑M2/151‑11 (MQ=255)
ttgtGTGCGCCGAAGAGTGATGCTGGCGTGGGCCGGCCCTCGCGCGGGTGGGCCCGCTCCTACCGGGCGGTGGACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCcgcg < 2:5187982/151‑1 (MQ=18)
tgtgGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcga > 1:2588650‑M2/1‑139 (MQ=255)
gtgGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaa > 2:1578587‑M2/1‑138 (MQ=255)
gtgGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaa > 1:1020940‑M2/1‑138 (MQ=255)
gtgGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtt < 1:702291‑M2/141‑4 (MQ=255)
ggTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGCGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaagg < 2:350963‑M2/151‑16 (MQ=255)
ggTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaatg < 1:474423‑M2/151‑16 (MQ=255)
ggTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTACGAGCGGGCTTACCCGCGAAGAGGCCAGCACACGCACTCCCAATTGTAGGAGCGGgtttacccgccacgg < 2:637841‑M2/151‑16 (MQ=255)
gTCGCCAAATTGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTTCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggg > 1:5227620‑M2/1‑135 (MQ=255)
gTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggg > 2:2548505‑M2/1‑135 (MQ=255)
tCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaagggg > 1:3662491‑M2/1‑134 (MQ=255)
gCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggcc < 1:4220714‑M2/151‑20 (MQ=255)
gCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggcc > 1:2301088‑M2/1‑132 (MQ=255)
cAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgacggggccgg < 1:3490354‑M2/151‑22 (MQ=255)
cAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccgg > 1:6500724‑M2/1‑130 (MQ=255)
aaaTAGGGATGCTTGCCTGGGCCGGGCCTTTCGCGGGTGAACCCGCCCCTGCAGGGCGGGCCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggc > 1:3789453‑M2/1‑129 (MQ=255)
tAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcaca < 1:3749600‑M2/151‑26 (MQ=255)
gTGATGCGTGCCTGGGGCGGGCCTTTCGCGGGTAAACGCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacagg > 2:4787628‑M2/1‑124 (MQ=255)
aTGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtgtacccgcgaaggggccggcacaggcac < 1:3178203‑M2/151‑31 (MQ=255)
tGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGTAGCGGGGTTACCCGCGAAGAGGCCAGCACAGGCACTCCAACTTGGAGTAGCGGgtttaccccccaagcgccccgcacaggcact < 2:38702‑M2/151‑32 (MQ=255)
tGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGGTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGTgtttacccgcgaaggggccggcacaggcactccaa < 1:1729221‑M2/151‑36 (MQ=255)
tGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTCTGTAGCAGCGGGTTTACCCGCGCCGAGGCCAGCACAGGCACTCCACATTGTAGGAGCGGgcttacccgccaaggcgcccgcaccggcactccac < 1:5682872‑M2/151‑36 (MQ=255)
ggcCGGGGCGGGCCCTTGCGGGGGTGAACCCGCTCCTACGGGGGAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaa > 2:3056966‑M2/2‑116 (MQ=255)
gCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaa > 1:5003304‑M2/1‑115 (MQ=255)
ccTGGGCCGGCCGTTGCGCGGGTAAACCCGCTCCTGCAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaat > 2:225038‑M2/1‑114 (MQ=255)
atgGGCCGGCCATTTCGCGGTTAAACACGCTCCTAAAGGGCAGTGAACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaatt > 1:1628273‑M2/2‑113 (MQ=255)
tGGGCCGGCCCTTTCGCGGGTAAGCCCGCGCCTGCAGGGCAGGGCACACCCTTTGTAGGAGCGGGTTTGCCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattg > 2:1719161‑M2/1‑112 (MQ=255)
gccggccCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtag < 1:5424385‑M2/151‑43 (MQ=255)
ccggccCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAAATGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattggagg < 1:2896221‑M2/151‑44 (MQ=255)
cccTTTCGCGGGTACTCCCGCGCCTACAGGGCAGTGCGCCCGCTTTGGAGGGGCGGGTTTTCCCGCGGAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcg > 2:3749600‑M2/1‑104 (MQ=255)
cccTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcg > 1:3158986‑M2/1‑104 (MQ=255)
cccTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcg > 2:4270634‑M2/1‑104 (MQ=255)
ccTTTGGCGGGTAAGCGCGCTCCTACAGGGCAGTGCACACCCTTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcgg > 2:4192966‑M2/1‑103 (MQ=255)
cgGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaatcgtaggagccgttttacc < 2:4120186‑M2/151‑56 (MQ=255)
gtcatcctgctccTACAGTGATGTGCACCCCCTCTGTGGGAGTGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgc > 1:356337‑M2/6‑93 (MQ=255)
tAAACCCGCCCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcg > 1:1104734‑M2/1‑92 (MQ=255)
aaCCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTCCCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaa > 1:5110516‑M2/1‑90 (MQ=255)
cggctCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggg > 1:2148987‑M2/3‑87 (MQ=255)
ccGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgcaggg < 2:6130627‑M2/151‑65 (MQ=255)
ccGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggg < 2:165794‑M2/151‑65 (MQ=255)
cGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaagggg < 1:372132‑M2/151‑66 (MQ=255)
cGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaagggg < 1:1972354‑M2/151‑66 (MQ=255)
cGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggacggcacaggcactccaaattgtaggagcgtttttacccccgaagggg < 2:581644‑M2/151‑66 (MQ=255)
cTCGTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggcc > 2:549209‑M2/1‑84 (MQ=255)
cTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggcc < 1:3645174‑M2/151‑68 (MQ=255)
cAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcaca < 1:5118134‑M2/151‑74 (MQ=255)
aGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacag > 1:2698049‑M2/1‑77 (MQ=255)
ggCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggc < 1:5689779‑M2/151‑77 (MQ=255)
ggCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcgggtttacccgcgaaggggccagcacaggc < 2:2030508‑M2/151‑77 (MQ=255)
gCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggca < 1:5841310‑M2/151‑78 (MQ=255)
gCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggca < 1:5944322‑M2/151‑78 (MQ=255)
aGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcacc < 2:1290687‑M2/151‑80 (MQ=255)
cacaCCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgcaggagcggcgctacccgcgaaggggccggcacaggcactccaa < 2:2333166‑M2/151‑84 (MQ=255)
acCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaagat < 1:4270632‑M2/151‑87 (MQ=255)
acCCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggctttacccgcgaaggggccggcacaggcactccgagat < 1:4285118‑M2/151‑87 (MQ=255)
ccTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgt < 1:803270‑M2/151‑89 (MQ=255)
ccTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggtcttacccgcgaaggggccggcacaggcactccaaattgt < 1:357927‑M2/151‑89 (MQ=255)
tGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtagga < 1:4533407‑M2/151‑93 (MQ=255)
tGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaatcgtagga < 2:1224620‑M2/151‑93 (MQ=255)
tGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaatcgtagga < 2:1347272‑M2/151‑93 (MQ=255)
gTAGGGGCGGGTGTACCGGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggag > 2:3633849‑M2/1‑58 (MQ=255)
gTAGGAGCGAGTTTCCCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggag > 1:3129894‑M2/1‑58 (MQ=255)
tAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGcc < 2:324238/151‑1 (MQ=255)
aGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggagcg > 2:2694784‑M2/1‑56 (MQ=255)
ggAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggagcgg < 1:1267206‑M2/151‑97 (MQ=255)
gAGCGGGTTGACGCGCGAAGCGGCCAGCACAGGCACGCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggagcggt > 2:5414664‑M2/1‑54 (MQ=255)
aGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggagcggtt > 2:3162144‑M2/1‑53 (MQ=255)
tttACCCGCGAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgacggggccggcacacgcactccaaattgtaggcgcggtctcaccc < 2:4923490‑M2/151‑105 (MQ=255)
tcgcgcgaagAGGCCAGCGCAGGCACTCCAATTTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcg > 2:3331707‑M2/4‑44 (MQ=255)
gcgAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaatggtaggagcggttttacccgcgaagg < 1:3924327‑M2/151‑112 (MQ=255)
gcagaggcCAGGACAGGGACTCCAATTTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaagggg > 2:2910189‑M2/3‑38 (MQ=255)
gAAGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCGTCCACCCCGCCGGGtgc > 1:1448489/1‑149 (MQ=18)
aaGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggc > 1:3192248‑M2/1‑37 (MQ=255)
aaGAGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggagcggttttacccgcgaaggggccggcacaggcactccaaattgcaggagcggccttacccgcgaaggggc < 2:4632132‑M2/151‑115 (MQ=255)
agagGCCAGCACAGGCACTCCAAATTGTAGGAGCGGgtttacccgcgaaggggccggcacaggcactccaaattgtaggaccggttttacccgcgaaggggccggcacacccactccaaaatgcaggagcggtcctacccgcgaaggccac < 2:5601914‑M2/151‑116 (MQ=255)
ggggCCAGCACAGGCACTCCAAATTGTAGGAGCGGg > 2:3612195‑M2/1‑35 (MQ=255)
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TGCTGGTGTTTCGCAAGCCCCGGGCCAGGGTGGCTGAGGGTGTTGTGGTCGCCAAATAGTGATGCTTGCCTGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGCAGTGCACACCCTTTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGTTTTACCCGCGAAGGGGCCAGCACAGGCACTCCAAATTGTAGGAGCGGGTTTACCCGCGAAGGGGCCAGCACAGGCATTCCAAAACGGTCAGCCCTTCCACACCTGCGGGTTCAC > CP009974/3148415‑3148711
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
