Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 336 367.5 14491858 96.8% 14028118 150.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC CP009974 3,503,916 Δ2,603 bp RPPX_15645–RPPX_15650 RPPX_15645, RPPX_15650

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009974 3503916–3506513 3506518 6–2603 369 [0] [0] 365 RPPX_15645–RPPX_15650 RPPX_15645,RPPX_15650

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009974 = 35039150 (0.000)345 (1.010) 178/282 0.5 100% intergenic (‑249/+106) RPPX_15640/RPPX_15645 membrane protein/ATPase AAA
?CP009974 3506519 = 0 (0.000)intergenic (‑211/‑14) RPPX_15650/RPPX_15655 integrase/tRNA 2‑thiocytidine biosynthesis protein TtcA

GATK/CNVnator alignment

N/A