Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
368 |
332.2 |
13092066 |
97.0% |
12699304 |
150.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
CP009974 |
3,503,916 |
Δ2,603 bp |
|
RPPX_15645–RPPX_15650 |
RPPX_15645, RPPX_15650 |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
CP009974 |
3503916–3506512 |
3506518 |
7–2603 |
321 [0] |
[0] 319 |
RPPX_15645–RPPX_15650 |
RPPX_15645,RPPX_15650 |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
CP009974 |
= 3503915 | 0 (0.000) | 311 (1.010) |
171/282 |
0.4 |
100% |
intergenic (‑249/+106) |
RPPX_15640/RPPX_15645 |
membrane protein/ATPase AAA |
| ? | CP009974 |
3506519 = |
0 (0.000) | intergenic (‑211/‑14) |
RPPX_15650/RPPX_15655 |
integrase/tRNA 2‑thiocytidine biosynthesis protein TtcA |
GATK/CNVnator alignment
N/A
