Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
336 |
367.5 |
14491858 |
96.8% |
14028118 |
150.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009974 |
4,286,522 |
C→T |
intergenic (+378/+266) |
RPPX_19070 → / ← RPPX_19075 |
LacI family transcriptional regulator/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009974 | 4,286,522 | 0 | C | T | 98.8%
| 1329.1
/ ‑5.9
| 421 | intergenic (+378/+266) | RPPX_19070/RPPX_19075 | LacI family transcriptional regulator/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (3/2); new base T (182/229); total (186/235) |
| Fisher's exact test for biased strand distribution p-value = 6.59e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 432 total aligned reads displayed.
GCGTCTGCGGGAGGGAATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCAC > CP009974/4286374‑4286669
|
gCGTCTGCGGGAGGGAATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACctgc < 1:491320/151‑1 (MQ=255)
gTCTGCGGGAGGGAATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTAACCGCGAAAGGGCCGGCCCTGCTGGCCCATCTCCACccgccg > 1:7036513/1‑151 (MQ=255)
ggagggaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCg < 1:1388322/151‑1 (MQ=255)
ggagggaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCg > 1:883155/1‑151 (MQ=255)
agggaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGtt > 1:4215333/1‑151 (MQ=255)
agggaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGtt < 1:6125955/151‑1 (MQ=255)
agggaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGtt < 1:6848907/151‑1 (MQ=255)
ggaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTgc < 1:7152233/151‑1 (MQ=255)
ggaATCTCGCAGGCGCTTTATTATGGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTgc < 2:3999025/151‑1 (MQ=255)
gaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTgcg < 1:1490756/151‑2 (MQ=255)
gaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTgcg < 2:5623889/151‑2 (MQ=255)
aaTCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTgcgg < 2:3367237/151‑3 (MQ=255)
tctcGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTgcggcc > 1:4686411/1‑151 (MQ=255)
cAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTgcggccgcgac > 1:2997804/1‑148 (MQ=255)
cAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTgcggccgcgac > 1:7229596/1‑148 (MQ=255)
aGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGAcc < 2:4633670/151‑1 (MQ=255)
ggCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCg < 2:7037302/151‑1 (MQ=255)
gcTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTTCGGCCGCGACTGTAt > 1:1810422/1‑151 (MQ=255)
gcTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCCACCGTAt > 1:446341/1‑151 (MQ=255)
cTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTAtt > 1:5287894/1‑151 (MQ=255)
cTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGATCGCCATAGCAGCCGCCACCGCAtc > 1:4350904/1‑150 (MQ=25)
attattGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCCACCGTATTcgcg > 2:378318/1‑151 (MQ=255)
tattGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGGAGGAGCGGGTGTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGGTCACCGTTGCGGCCGCGACCGTAGTCGCggg > 2:1696496/1‑151 (MQ=21)
ttGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTa < 2:4690266/151‑1 (MQ=255)
ccTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAAc < 2:1018041/151‑1 (MQ=255)
ccTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGCTCAAc > 2:2605688/1‑151 (MQ=255)
cTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCa > 1:6768460/1‑117 (MQ=255)
gtgGCCGCCTCTGCGCGCTGAGAGCATATCCCCTGAGGATGGCGCCGGACCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCg < 2:3646123/151‑1 (MQ=17)
tgGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTGACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGc < 1:4591833/151‑1 (MQ=255)
cgccTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCCCAGCTGGCCAAGTCACACCCGCCGCTCACCGCTCCAGGCCCAACCATATCCCCGGGCAGACGCGCTCCt > 2:3054164/1‑151 (MQ=18)
cgccTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCt < 2:3176811/151‑1 (MQ=255)
ccTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTac < 2:4122853/151‑1 (MQ=255)
ctctTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTaca < 2:6597395/151‑1 (MQ=255)
ttCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAg > 1:5859804/1‑151 (MQ=255)
gcgcTGAAAGCATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGTTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATc < 2:6972028/151‑1 (MQ=18)
gcgcTGAAAACATATCCCTGGAGAATGGCGCAGGACCGTCGTATGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCTTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATc < 2:1445195/151‑1 (MQ=18)
cgcTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTACTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCg > 1:5005088/1‑151 (MQ=255)
gcTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGAGCGTATTCGCGGGTAAACCCGCTTCTACACAGATccg > 1:6064869/1‑149 (MQ=18)
aaaaCATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGTCAATCTCGACGTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCggtggt > 2:1301043/1‑151 (MQ=18)
aaaaCATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCggtggt < 2:5014443/151‑1 (MQ=255)
aagcgtgtCCCTGGAGATTGGGGCAGGCGCGTCGTAGGAGCGGGTTTGCCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGgtggtg < 2:5147215/144‑1 (MQ=14)
tatCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGacac < 1:312949/151‑1 (MQ=255)
tCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGGTCACCGCGGCCGCCGCGCCCGTATCCCCGGGCCACCCCGCCCCTACCCCGATCCgtgctgaccaccg > 2:6861024/1‑144 (MQ=17)
agaATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAGACCGGCAGCTACAAAGTCCGGTGGTGGGCTCCGGTCggtg > 1:3412612/1‑151 (MQ=17)
agaATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGACCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGGTGGGGCCGCGACCGTATTCGCGGCTAAACCCGCCCCTACCCAGATCGGAGGTGGACACAGGTCggtg > 2:4231103/1‑151 (MQ=18)
aTGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACATGTCGGTGGGGGACACCGGGCgggggtg > 2:7128807/1‑150 (MQ=14)
tGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTg > 1:1011628/1‑151 (MQ=255)
gcgcAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGa > 2:3978073/1‑151 (MQ=255)
cgtAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCcgtcg < 1:5353573/151‑1 (MQ=255)
cgtAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCcgtcg > 1:3668869/1‑151 (MQ=255)
cgtAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACACGGCGGTGGTTGGACACAGGcctccg > 2:2266871/1‑147 (MQ=11)
gtAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCcgtcgt < 2:4455959/151‑1 (MQ=255)
tAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTa < 1:2233874/151‑1 (MQ=255)
aGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAg < 1:3253929/151‑1 (MQ=255)
aGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCggtgg > 1:1194569/1‑131 (MQ=255)
aGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAg > 1:1694811/1‑151 (MQ=255)
aGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAg < 1:2437896/151‑1 (MQ=255)
ggAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAgg < 2:1997612/151‑1 (MQ=255)
ggAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGAGGTGGGCACAGCTCGGCGGTTGGACAAAGGCGGTCGTAgg > 1:6263923/1‑151 (MQ=14)
gAGCGGGTTGCCCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTGGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGa < 2:5365751/151‑1 (MQ=14)
gCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGc < 1:5174113/151‑1 (MQ=255)
gggTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCgg < 1:3205387/151‑1 (MQ=255)
gggTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCCGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGAACCGTGGCGGACCCAGGCCGGCGGTTGGACACAGGCCGCCGCAGGAGCgg > 2:2925834/1‑151 (MQ=14)
gggTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCAGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAACCCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGACCGTCGTAGGAGCgg < 1:6182480/151‑1 (MQ=255)
ggTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCggg < 1:3491008/151‑1 (MQ=255)
gTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTacac > 2:4941681/1‑96 (MQ=11)
gTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCg > 1:3994489/1‑148 (MQ=255)
tttACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGtt < 1:3793367/151‑1 (MQ=255)
gcaCCCGCGAACGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACGGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTc < 1:3714088/149‑1 (MQ=255)
caCCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCa < 2:2766934/150‑1 (MQ=255)
ccccGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCAc < 2:1535215/150‑1 (MQ=255)
cgcgAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGCAAACCCGCTCCTACACAGATCGGAGGTTGAAACAGGTCGGTGGCTGGACCCAGGCCCCCGCAAGCGCGGCGTCACCcg > 2:5695720/1‑151 (MQ=14)
gcgAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCcgc < 1:411171/151‑1 (MQ=255)
gcgAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCAGCCAGCGTATGCGCGGGGAAGGGCGCTCGTGTAGAGATCGGTGGTGGCCGCAGGTCGGAGGTTGGACACAGGCCGTCGGAGGAGCGGGTTCACCcgc > 2:6725612/1‑151 (MQ=17)
cgAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCcgcg > 1:1996856/1‑151 (MQ=255)
gaaggagccggccTTGCTGGCTAAGCTCCACCTGCCGTTCAGCGTTGGCGCCGCCACCGTATTCGCGGGTAAACCCTCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGa < 2:241773/145‑1 (MQ=17)
gAATGGGCCGGCCCTGCTGGCCAATCTGCATCTGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGa < 1:2804952/151‑1 (MQ=255)
gAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGa > 1:665582/1‑151 (MQ=255)
gAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGa > 2:6039609/1‑151 (MQ=255)
gAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGa < 1:4959448/151‑1 (MQ=255)
gccgggcCTGCTGGCCAATCTCCACGTGCCGTTCACCGTTGGGGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACGGAGCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAgggc < 2:2480123/151‑1 (MQ=17)
gccggccCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACCCAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAgggc > 2:4748933/1‑151 (MQ=255)
cggccCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAgggccg < 1:2524447/151‑1 (MQ=255)
ccTGCTGGCCAATCTCCCCCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAgggccgggcc < 2:613600/151‑1 (MQ=255)
ccTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGCTCACCCGCGAACgggccgggac > 2:1886816/1‑149 (MQ=14)
cggctgGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCct < 2:878392/149‑1 (MQ=255)
tgGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgctg < 1:6039795/151‑1 (MQ=255)
tgGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCCGTGGTGGGCCAAGGCCCGTGGTTGGAGACAGGCCGTCTGAGGAACGGGATGACCAGGGAAACGGGCGGGCctgacg > 1:6892072/1‑148 (MQ=14)
tgGCCAAGCTGCACCTGCCGTTCACCGTGGTCGCCGCCACCGTATTCGCGGGTAACCCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgctg < 1:5650650/151‑1 (MQ=17)
ggCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGGAAACCCGCGCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGGGCGGGTTCACCCGCGAAAGGGCCGGGCCGGCTgg > 1:1564729/1‑151 (MQ=18)
ggCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTgg < 2:3524328/151‑1 (MQ=255)
ggCCAATCTCCACCTGCCGTTCACCGTTGCCGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGGGGACACAGGTCGGTGGTTGGACCCAGCCCCTCCCACGAGCGGCTTCACCCCCGACAAGGCCGGCCcagcacc > 2:1123261/1‑148 (MQ=14)
ccAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCCGGcc > 1:2650206/1‑151 (MQ=255)
cAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGCGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAAACGGCCGGGCCTGCTGGCCa > 2:5480994/1‑151 (MQ=17)
cAATCTCCACCTGCCGTTCACCGTTGTCGCCGCAACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGGCGGCGGGTGGACACAGTGCGCCGTAGCAGCGGGTGCACAAGCGAAAGGGCCGGGCCTGTTGGCCa > 2:4265080/1‑151 (MQ=14)
tctcCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAAtc > 1:6474614/1‑150 (MQ=17)
ctcCACCGGCCGTTCACCGTTGCGGCCGCGACCGTATTGGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAAtct < 2:6222530/151‑3 (MQ=17)
cACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCGATCGGTGGTGGACCCAGGTCGGTGGTTGGACACGGGTCGCCGTCGAAGCGGGCTCACCCGCGACCCGGGCGGGCCTGCTGGCCGATCTccc > 2:5223853/1‑150 (MQ=14)
cACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCa > 2:2233874/1‑151 (MQ=17)
aCCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCAc > 1:5953595/1‑151 (MQ=255)
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GCGTCTGCGGGAGGGAATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCAC > CP009974/4286374‑4286669
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
