Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
368 |
332.2 |
13092066 |
97.0% |
12699304 |
150.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009974 |
4,286,522 |
C→T |
intergenic (+378/+266) |
RPPX_19070 → / ← RPPX_19075 |
LacI family transcriptional regulator/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009974 | 4,286,522 | 0 | C | T | 97.8%
| 1141.2
/ 5.7
| 366 | intergenic (+378/+266) | RPPX_19070/RPPX_19075 | LacI family transcriptional regulator/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (4/4); new base T (147/208); total (151/215) |
| Fisher's exact test for biased strand distribution p-value = 7.23e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.18e-01 |
Only 100 of 371 total aligned reads displayed.
CGTCTGCGGGAGGGAATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCAC > CP009974/4286375‑4286669
|
gTCTGCGGGAGGGAATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACctgccg > 1:3153704/1‑151 (MQ=255)
gTCTGCGGGAGGGAATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACctgccg > 2:74974/1‑151 (MQ=255)
ggggaggtaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTGCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCAc < 1:1508939/150‑1 (MQ=255)
cGGGAGGGAATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCAc < 2:1951772/151‑1 (MQ=255)
gggagggaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCAcc > 1:460719/1‑151 (MQ=255)
gggagggaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCCGGCCAATCTCCACCTGCCGTTCAcc > 2:4120816/1‑151 (MQ=255)
agggaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGtt < 2:6517915/151‑1 (MQ=255)
gggaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGttc > 2:1134761/1‑150 (MQ=255)
gggaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTg > 1:5799940/1‑151 (MQ=255)
gaATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTgcg < 2:2899950/151‑2 (MQ=255)
tctcGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTgcggcc < 1:4290533/151‑1 (MQ=255)
ctcGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTgcggccg < 1:3656842/151‑1 (MQ=255)
cGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTgcggccgcg < 1:4375926/151‑2 (MQ=255)
cAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCGCCGCTGCGTCCGCGAc > 2:2147259/1‑151 (MQ=37)
cAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGAc < 1:2227146/151‑1 (MQ=255)
cAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGAc > 2:4621314/1‑151 (MQ=255)
cAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCCAc > 2:1238284/1‑151 (MQ=255)
gcTTTATTATTGCCTGTGGCCGCCTCTTCGCGGTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTAt < 2:3454852/151‑1 (MQ=255)
tttATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTc > 1:4988046/1‑151 (MQ=255)
ttcttattGCCTGTGGCCGCCTCTTCGCGCTGGAAACATAACCCTTGAGGATGGCGCAGGACCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCTGCCGTTCACCGTTGCCGCCGCGACCGTATTcg < 2:4816605/148‑1 (MQ=17)
attattGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTcgcg < 1:1686023/151‑1 (MQ=255)
attattGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTcgcg > 1:6516226/1‑151 (MQ=255)
attGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTAGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGt < 2:3078078/151‑1 (MQ=255)
tGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTaa < 1:3554551/151‑1 (MQ=255)
gCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGCTCACCGTTGCGGCCGCGACCGTATTCGCGGGCaaa > 1:2718112/1‑151 (MQ=255)
tgGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGGATTCGCGGGTAAACCCG‑c > 2:2732705/1‑151 (MQ=255)
ggCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGGAAGGGCCGGCCCTGCGGGCCAGACTCCACCTGCCGGTCACCGCTGTGGCCGTAACCGTAATCGCGGGTAAACCCG‑cc > 2:354271/1‑150 (MQ=21)
gccgccTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTCCCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGCCCGTATTCGCGGGTAAACCCG‑CTc < 1:3208252/151‑1 (MQ=21)
gcgccgcTTCGCGCTGAAAAGAGATCGCTTGAGAGTGGCGCAGGACCGTCGTAGGAGCGGGTTTACCGGCGAAAGGGCGGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTcc < 2:3388885/150‑1 (MQ=17)
cgccTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGCGTAAGCCCG‑CTccc > 1:3467559/1‑150 (MQ=18)
tctTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTac‑ac < 2:4314999/151‑1 (MQ=255)
ctTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAc‑aca < 1:604451/151‑1 (MQ=255)
tCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCGCCTGCCGTTCACCGTTGCCGCCCCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAgg > 2:4894089/1‑150 (MQ=255)
gcTGAAAACATATCCCTTGGGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCgg < 2:5925035/151‑1 (MQ=255)
cTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCggt > 1:1304075/1‑151 (MQ=255)
gAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCggtgg > 1:1781171/1‑151 (MQ=255)
aaaaCAGATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCggtggt < 2:5889498/151‑1 (MQ=255)
atatCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACCGCTCCGAGGGGGacc > 2:1302983/1‑150 (MQ=17)
tatCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGacac < 2:2804111/151‑1 (MQ=255)
tatCCCTTGAGAACGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGacac < 1:6299063/151‑1 (MQ=255)
atCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGAcaca < 1:218362/151‑1 (MQ=255)
attGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTc < 2:3133962/150‑1 (MQ=255)
cgtaggttGGCCCAGGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCg < 1:390974/144‑1 (MQ=14)
tGAGAGGGGCGCGGGCCCGGCGTGGGAGCGGGGTTACCCGGGAAAGGGCCGCCCCTGCTGGCCAATCTCGACCTGCCGTTCGCCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CGCCTAC‑ACAGATCGGTGGTGGACACAGGGCgg < 2:3677541/151‑1 (MQ=14)
ggtggttGGCGCAGGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCgg < 2:5203322/145‑1 (MQ=17)
gagaATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCggt > 1:544489/1‑151 (MQ=255)
agaATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATc > 2:5397823/1‑130 (MQ=255)
aaTGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCggtggt > 1:830913/1‑151 (MQ=255)
acacaggccGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGac < 2:2492833/144‑1 (MQ=14)
gcAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGtggtgg < 1:2882413/130‑1 (MQ=255)
acagcccGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGTCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATTGGTGGTGGAcacac < 1:564995/130‑2 (MQ=11)
acagcccGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGTCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATTGGTGGTGGAcacac > 2:564995/6‑134 (MQ=11)
aggccGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGAGACAg > 1:3271000/4‑151 (MQ=14)
aCCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGc < 1:2380267/151‑1 (MQ=255)
cggcgtAGGAGCGGGTGTACCCGGGAAAGGGCCGGCCCGGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCcg < 2:913653/148‑1 (MQ=14)
tcgtAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCcgtc < 1:1569652/151‑1 (MQ=255)
gctgaGGGGCGGGTTTCCCGGCGAAGGGGCCGGCCCTGCGGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCcgtc < 2:3553195/147‑1 (MQ=14)
cgtAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCcgtcg < 1:5526406/151‑1 (MQ=255)
cgtAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCcgtcg < 2:1450618/151‑1 (MQ=255)
gtAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATc < 2:1014661/111‑1 (MQ=11)
gtAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATc > 1:1014661/1‑111 (MQ=11)
tcgtggCGGGGTTGCCGGGGAGAGGGCCGGGCCTGCTGGCCGATCTCCGCCCGCCGTTCACTGTTGACGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTACGCCGGATCGGTGGTGGACACAGGTCGGTGGTTGGTCACAGGCcgtcgt < 2:6380873/146‑1 (MQ=11)
tAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACCGGTCGGTGGTTGGACACATGCCGTCGTa > 1:1241502/1‑151 (MQ=14)
aGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAg > 1:3768088/1‑151 (MQ=255)
ggAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGCCGGAgg > 2:3314536/1‑151 (MQ=11)
cGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCg < 1:62580/151‑1 (MQ=255)
cGGGTTGACCCGCGAGAGGGCCGCCCCTGCTGGCCAAGCCCCACCTGCCGTTCACCGTTGTCGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCg < 2:5998347/151‑1 (MQ=17)
gggTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCgg < 1:2600817/151‑1 (MQ=255)
gggTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCgg > 1:4115063/1‑151 (MQ=255)
gtgaaCCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCGCCCCCTAC‑ACAGACCGGTGGTGGACACAGGCCGGGGGTGGGCCACAGGCGGCCTTAGGAGCggg > 2:648717/5‑151 (MQ=14)
ttcaCCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGCCGTAGGAGCgggcg > 2:3858765/4‑149 (MQ=14)
ttACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGACCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTc < 2:6128018/151‑1 (MQ=255)
ttACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACTGGTCCGCGGTTGACACGGGCCGAGGGCTGGGCTCAGGCAGTCGTAGGAGCGGGtcc > 1:6386628/1‑149 (MQ=14)
ttACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCCGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACCGGACGGTGGTGGGCCCCGGTCCGCGGTTGGAGCCAGGTCGTCGTAGGAGCggggta > 2:5428795/1‑148 (MQ=14)
tACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCa < 1:4907880/151‑1 (MQ=255)
tACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCCCCACCCGCCGTTCACCGATGCCGCCGCTACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATTGGTGGTGGACACAGGTCGGTGATTgggc < 2:5059623/126‑3 (MQ=11)
cccGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGAACCGTGGTGGACACAGGGCGGTGGTTGGACACAGGCCGTCGGAGGAGCGGGCTCAcc > 1:2483067/1‑151 (MQ=14)
cgcgAAAGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCcgtc > 2:3769311/1‑132 (MQ=255)
aGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGCCGTAGGAGCGGGTTCACCCGCGAAAg > 1:3090691/1‑151 (MQ=255)
aGGGCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGaa < 2:1797344/149‑1 (MQ=255)
gggCCGGCCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGGTCACCCGCGAAAgg > 2:4421919/1‑151 (MQ=255)
gggCCGGCCCTGCTGGCCAAGCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTTGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTAGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAgg < 1:5157301/151‑1 (MQ=255)
ccggccCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTGCACCCGCGAAAgggcc > 1:535955/1‑151 (MQ=255)
ccggccCTGCTGGCCAAGCTCCACCTGCCGTTCACCGTTGTGGCCGCGACCGTATGCGCGGGTAAACGCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAgggcc < 1:3366530/151‑1 (MQ=17)
cggccCGGCTCGCCAGTCACCACCTGCCGTTCGCCGTTGCGGCCGCGGCCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAgggccg < 1:1973091/151‑1 (MQ=17)
ggccGTGCGGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAgggccgg < 2:6225712/151‑1 (MQ=255)
ggccCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAgggccgg < 2:243619/151‑1 (MQ=255)
ccTGCGGGGCAATCTCCACCGGCCGTTCAGCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAgggccggccc < 2:5848210/151‑1 (MQ=17)
ctgctgGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCct > 1:4776038/1‑151 (MQ=255)
tgctgGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCctg < 1:1439182/151‑1 (MQ=255)
gctgGCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgc > 1:4461446/1‑151 (MQ=255)
gctgGCCAATCTCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCctgc < 1:5331362/151‑1 (MQ=17)
ggCCAATTTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGTTCGGTGGTGGTTACAGGTCGGTGGTTGGACTCTGGCTGTCTCGTGAGCGGGTTCGCCAGCGAAAGGGTCGAGGCGGCTgg > 2:1307951/1‑151 (MQ=9)
ggCCAATCCCCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTgg < 1:4510848/151‑1 (MQ=17)
gCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGc > 1:2026883/1‑151 (MQ=255)
gCCAATCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGc < 2:2202208/151‑1 (MQ=255)
aTCTCCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAt < 1:76377/151‑1 (MQ=255)
tctcCACCTGCCGTTCACCGTTGCGGCCGCGACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCaaac > 1:93749/1‑149 (MQ=255)
tcCACCTGCCGTTCACCGTTGTCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTc > 2:4294764/1‑151 (MQ=255)
cccACCTGCGGTGCACCGTTGCGGCCGCGCCCGTATTCGCGGGTAAACCCG‑CACCTAA‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGCCCTGCTGGCCAAtctc < 2:1620620/150‑1 (MQ=14)
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CGTCTGCGGGAGGGAATCTCGCAGGCGCTTTATTATTGCCTGTGGCCGCCTCTTCGCGCTGAAAACATATCCCTTGAGAATGGCGCAGGACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCG‑CTCCTAC‑ACAGATCGGTGGTGGACACAGGTCGGTGGTTGGACACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCAC > CP009974/4286375‑4286669
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
