Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
368 |
332.2 |
13092066 |
97.0% |
12699304 |
150.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009974 |
2,910,161 |
T→C |
intergenic (+65/‑594) |
gudD → / → RPPX_12965 |
glucarate dehydratase/GABA permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009974 | 2,910,161 | 0 | T | C | 85.9%
| 979.6
/ 96.6
| 394 | intergenic (+65/‑594) | gudD/RPPX_12965 | glucarate dehydratase/GABA permease |
| Reads supporting (aligned to +/- strand): ref base T (12/43); new base C (126/210); total (138/256) |
| Fisher's exact test for biased strand distribution p-value = 3.23e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.61e-01 |
Only 100 of 414 total aligned reads displayed.
GGTGCGCGGGATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCC > CP009974/2910013‑2910311
|
gTGCGCGGGATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACcgtcgtc > 2:6222763/1‑150 (MQ=255)
ggcgcGGGATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAg < 1:5892755/150‑1 (MQ=255)
gcgGGATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAg > 2:2714943/1‑151 (MQ=255)
cgGGATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGc < 2:5450691/151‑1 (MQ=255)
cgGGATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGc > 1:467903/1‑151 (MQ=255)
gggATGACAGCGTGGCGATGCATTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCGCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCg < 2:4500116/151‑1 (MQ=255)
gggATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCg > 2:3959598/1‑151 (MQ=255)
gATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCggg > 2:3296365/1‑151 (MQ=255)
gATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCggg > 1:813439/1‑151 (MQ=255)
tGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCTGGCAAGCCCGCTCCTACATCAACCTGTGGTGTCGCCCCACACCGGCGTAGGAGCggggt > 2:2100953/1‑149 (MQ=255)
tGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGtt > 2:6100574/1‑151 (MQ=255)
aCAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCa < 1:3870626/151‑1 (MQ=255)
aGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCAcc > 2:282048/1‑151 (MQ=255)
aGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCGCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCAcc < 2:3771125/151‑1 (MQ=255)
ggTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCcg < 2:1961682/150‑1 (MQ=255)
gTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCcgc < 1:1027250/151‑1 (MQ=255)
ggCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGa > 2:2955040/1‑151 (MQ=255)
ggCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCGGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCGACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGa < 1:4163814/151‑1 (MQ=255)
cGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAAt > 1:1715260/1‑151 (MQ=255)
gATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGAATCGCCACGCACCGTCGTAGAAGCCGGTTCACCCGCGaaaa > 1:4977088/1‑149 (MQ=25)
cAGTCCCGGATTCCGGGTTGGACCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGcc < 2:53873/151‑1 (MQ=255)
aGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCg > 2:5554234/1‑151 (MQ=255)
tCCTGATTCCGGGTTAGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGCGCGGGTTCACCCGCGAATAGGCCGGaa > 1:1188924/1‑150 (MQ=255)
aTTCCGGGTTGGAGCTTCGATAACAACCGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgcc < 2:3210735/151‑1 (MQ=255)
ccGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccgcc > 1:2556934/1‑151 (MQ=255)
ttGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATa < 1:6265313/151‑1 (MQ=255)
gAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAcct < 1:6073056/151‑2 (MQ=255)
tCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGt > 2:5941519/1‑151 (MQ=255)
aaCAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTc < 1:576474/151‑1 (MQ=255)
aaCAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTc > 1:6147828/1‑151 (MQ=255)
aaCAAACGGCCTTGCCTGGTGCGTTGAGGCTACGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGAGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTc < 2:5104063/151‑1 (MQ=255)
aCGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTg > 1:6387554/1‑123 (MQ=255)
aCGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCAccgc < 1:536168/151‑1 (MQ=255)
gtccTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAccgccg > 1:5626203/3‑151 (MQ=255)
ggCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCAccgccg < 2:3099458/151‑1 (MQ=255)
ccTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCa < 2:4441871/151‑1 (MQ=255)
cTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAc < 1:3760808/151‑1 (MQ=255)
ccTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCCCCCGc > 2:2612229/1‑151 (MQ=255)
tGGGGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCa < 1:2745955/151‑1 (MQ=255)
gTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCCCCGCCGCACCCGCCAcc < 2:3543915/151‑1 (MQ=255)
gAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCCCCCGCCACCGCCTtca > 1:3945746/1‑151 (MQ=25)
gAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATtca < 1:3175092/151‑1 (MQ=255)
cTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCaa < 1:4035586/151‑1 (MQ=255)
cGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCg < 2:3659512/151‑1 (MQ=255)
gCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCa > 1:770271/1‑151 (MQ=255)
cgtctTCGCGGGCAAGCCCGCTCCTACAGCGACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAc < 2:1577713/149‑1 (MQ=21)
ctctTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTg < 1:3132707/91‑1 (MQ=255)
ctTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAccgt > 1:1008650/1‑149 (MQ=255)
ttCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAccgtc > 1:3452426/1‑148 (MQ=255)
ttCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTc < 1:514455/151‑1 (MQ=255)
ttCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTc < 1:3367203/151‑1 (MQ=255)
ttCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTc < 2:4712783/151‑1 (MQ=255)
gcgGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAcc < 2:6501940/97‑1 (MQ=255)
gcgGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATc > 1:218849/1‑139 (MQ=255)
ccgGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGcc < 1:3267727/150‑1 (MQ=255)
cgGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCa < 1:425046/151‑1 (MQ=25)
aaGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCAc < 2:426221/151‑1 (MQ=255)
cccGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATGCCCCCAGTCATTCACCGTCGCACCCGCCACCGCATtc < 1:3029898/123‑1 (MQ=17)
cccGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGTCGCACCCGCCACCGCATtc > 2:3029898/1‑123 (MQ=255)
ccGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGGGCAGCCGCGCATGGGCCGGACCTGCCGCCCAATACCTGGAGGCATTCACCGCCGCACCCGCCACCGCATTCGCCAACCAGCACGGTCGCCACGCAccgtg > 2:849546/1‑148 (MQ=18)
cGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTg < 2:2331327/151‑1 (MQ=21)
cGCCCCTACATCAGCCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTg < 2:4105397/151‑1 (MQ=21)
ccTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAgg < 1:475616/151‑1 (MQ=21)
cattcATCGACCGGCACTGTCGCCCCGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAgg < 2:4831179/147‑1 (MQ=17)
tACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAg < 2:5292543/151‑1 (MQ=21)
tACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAg < 1:6422254/151‑1 (MQ=21)
aCATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGc > 1:5527017/1‑151 (MQ=21)
cATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCg < 2:5021109/151‑1 (MQ=21)
aTCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGCCACCGTCGCCACGTCCCGTTGTAGGAGCgg > 1:1595338/1‑151 (MQ=21)
cAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGt < 1:5664366/151‑1 (MQ=21)
caCCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGtt < 1:2911059/150‑1 (MQ=21)
aaCCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGtt < 2:5616447/151‑1 (MQ=21)
aaCCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGc > 1:43871/1‑146 (MQ=21)
ggtggtGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCgg > 2:1360484/1‑144 (MQ=255)
ggtggtGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCAcc < 2:119162/151‑1 (MQ=21)
ggtggtGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCgg < 1:1360484/144‑1 (MQ=255)
gcggcgtCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCAccc < 2:6387679/146‑1 (MQ=18)
cggtgCCGCCCCGCACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCGATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACCCTTGTAGGAGCGGGTTCACCcg < 2:3453609/150‑1 (MQ=255)
caccgtCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCTCAATACCCCCAGTCATTCACCGCCGCACCTGCCCCCGCATTCACCAATCGGCACCCTCGTCACGCACCCTCGGAGGCGCCGGTGCACCcg > 1:189740/5‑151 (MQ=14)
cccgtCGCCCCGCCCCCTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCGATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCcgc < 1:4913362/148‑1 (MQ=21)
gtgtCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCcgcg < 1:2421496/151‑1 (MQ=21)
cgtCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGa < 1:1925323/150‑1 (MQ=21)
gtCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGaa < 1:6481424/151‑1 (MQ=21)
tCGCCCCGCACCGTCGCAGGAGCGGGTTCCCCCGCGAATAGGCCGGCCCTGCCGCCCCACACCCCCAGTCATTCACCGCCGCACCCGCCCCCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAAt < 2:6346961/151‑1 (MQ=37)
gccacgcacCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATGCCCCCCGTCGTTAACCGCCCCCCCTGCCACCGCATCCATCATCCGGCCCCGTCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAg < 2:1766987/145‑1 (MQ=18)
gCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAcc < 2:746307/75‑1 (MQ=255)
ccccACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAgg < 1:900631/151‑1 (MQ=255)
cccACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGccc > 1:5062473/1‑53 (MQ=255)
cccACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGc < 1:4538721/151‑1 (MQ=21)
cacgcacCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTc < 1:2067603/106‑1 (MQ=11)
ccggacCGTGGTGGGAGCGGGTTCACCCGCGAATAGGCCGAACCTGCCGCCCAATACCCCCGGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGcc < 2:3351764/147‑1 (MQ=21)
ccACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGcc < 2:4636919/151‑1 (MQ=21)
cgtacCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCg < 1:4070780/148‑1 (MQ=255)
gtacCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAccgtc > 2:5778901/3‑104 (MQ=255)
gcacCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCGTCAATCGGCACCGTCACCACGCACCCTTGTAGGAGCGGGGTCACCCGCGAATAGGCCgg > 1:3654660/2‑151 (MQ=18)
acacCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCa < 2:4038022/83‑1 (MQ=255)
acCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTc < 2:14404/61‑1 (MQ=35)
acCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTc > 1:14404/1‑61 (MQ=35)
cgtcgtAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCt < 2:1013763/151‑1 (MQ=25)
cttGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGCTCACCCGCGAATAGGCCGGACCTg > 1:2658917/2‑151 (MQ=255)
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GGTGCGCGGGATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCC > CP009974/2910013‑2910311
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
