Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I1 R1
|
404 |
265.1 |
10478538 |
96.8% |
10143224 |
150.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009974 |
2,910,161 |
T→C |
intergenic (+65/‑594) |
gudD → / → RPPX_12965 |
glucarate dehydratase/GABA permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009974 | 2,910,161 | 0 | T | C | 88.3%
| 798.4
/ 62.4
| 312 | intergenic (+65/‑594) | gudD/RPPX_12965 | glucarate dehydratase/GABA permease |
| Reads supporting (aligned to +/- strand): ref base T (10/26); new base C (101/172); total (111/201) |
| Fisher's exact test for biased strand distribution p-value = 3.56e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.33e-01 |
Only 100 of 334 total aligned reads displayed.
GGTGCGCGGGATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCC > CP009974/2910013‑2910311
|
gcgcGGGATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAgg < 2:2958546/151‑1 (MQ=255)
ggATGGCAGCGTGGCGATGCAGTTCCTGATTCGGGGTTGGAGCTTCGATAGCAAGCGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAGGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCgg < 2:4232775/151‑1 (MQ=255)
tGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGtt < 1:774530/151‑1 (MQ=255)
aGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCAcc > 1:2935706/1‑151 (MQ=255)
gTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCcgc > 1:5206989/1‑151 (MQ=255)
gTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCcgc > 2:1784784/1‑151 (MQ=255)
gATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATa < 1:8127/151‑1 (MQ=255)
cAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGcc < 1:1793959/151‑1 (MQ=255)
ttCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGa > 2:4819183/1‑151 (MQ=255)
ttCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGa < 2:3890334/151‑1 (MQ=255)
ccTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGAcc < 1:3096074/151‑1 (MQ=255)
tGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTg < 1:3479601/151‑1 (MQ=255)
aTTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCCCACCGTCGTAGGCGCGGGGTCACCCGCGCGTCGGCCGCACCTgcc > 2:4469480/1‑151 (MQ=38)
ttCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgccg < 2:2205436/151‑1 (MQ=255)
gTTGGGGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAAt < 2:4948012/151‑1 (MQ=255)
gAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCACTAcct > 1:3594870/1‑150 (MQ=255)
gAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAcct < 2:195208/151‑2 (MQ=255)
gAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAccc > 1:3509742/1‑151 (MQ=255)
ttCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAg < 2:356015/151‑1 (MQ=255)
tCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGt > 1:4694619/1‑151 (MQ=255)
aaaCGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAAGACCGTCAGGCAGTCAcc > 2:4031116/1‑151 (MQ=37)
naCGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAccg > 1:1969065/2‑151 (MQ=255)
cGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCAccgcc < 1:2309834/151‑1 (MQ=255)
gCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACcgccgc < 2:3945214/151‑1 (MQ=255)
ttGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAcc > 2:3766412/1‑151 (MQ=255)
tggCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCAcc < 2:1602354/149‑1 (MQ=255)
tGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCAccgc < 1:3025106/144‑1 (MQ=255)
tGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCAccgc > 2:3025576/1‑144 (MQ=255)
cTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGcc < 1:2737085/151‑1 (MQ=255)
gTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCAcc < 1:3278847/151‑1 (MQ=255)
gTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCAcc < 1:2191606/151‑1 (MQ=255)
gCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAg < 1:2841558/125‑1 (MQ=255)
gAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATtca < 1:1025393/151‑1 (MQ=255)
gggCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTCCATCACCCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATtcat < 2:1831874/150‑1 (MQ=21)
gCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATtcatca < 2:5182698/151‑1 (MQ=255)
cTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCaa > 1:2853953/1‑151 (MQ=255)
tGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAAt < 1:893471/151‑1 (MQ=255)
cGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCg < 2:2854543/151‑1 (MQ=255)
gCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGGATAGGCCGGACCTGCCGGCCAATACCTCCAGTCATTCACCGCCGCACCTCCCACCGCATGCAGCAATCGGcc > 2:1343787/1‑150 (MQ=37)
ccTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAc > 1:3725956/1‑151 (MQ=255)
ccTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCAc < 2:3371147/151‑1 (MQ=255)
ctctTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAcc > 1:1259916/1‑151 (MQ=255)
tctTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATc > 1:4363596/1‑144 (MQ=255)
tctTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATc < 2:4363596/144‑1 (MQ=255)
ctTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAAt < 2:3686910/98‑1 (MQ=255)
ctTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAccgt < 2:3497604/151‑3 (MQ=255)
ttCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTc < 1:1478761/151‑1 (MQ=255)
ttCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTc < 1:3139085/151‑1 (MQ=255)
tCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCg > 1:4835188/1‑151 (MQ=255)
cgccgGGCCCGCCAGCGCATACATCAACCGGCACCGTCGCCCCGCACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCg < 2:4872556/148‑1 (MQ=11)
cgggggCAAGCCCGCTCCTACAGCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGc < 2:3988463/148‑1 (MQ=21)
gcgGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATAcc > 2:2453469/1‑97 (MQ=255)
cgGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCa > 1:2597026/1‑151 (MQ=255)
cgGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCa < 1:4973973/151‑1 (MQ=255)
gggCAGGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCAc < 2:4301850/151‑1 (MQ=21)
gggCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCAc < 1:2529487/151‑1 (MQ=25)
gcgCAGGCCGGCTCCTCCATCAGCCGGTGGTGGCGCCCCACACCGGCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATCCATCAATCGGCACCGTCGCCAc < 2:4655980/149‑1 (MQ=18)
cAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACgtc > 1:4806/1‑149 (MQ=25)
ggCCCGCACCTGCAACAACCCGTGGCCTCGCCCCTCACACTCGTAGGCGCGCGTTCACCCTGAAAAAAGCGGGACCAGCCGGCCACTTCCTCCACTGTTTCCCCGCCGCGCCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTAcc < 2:4546149/150‑1 (MQ=255)
cccGCTACTGCATCAGCCGGTGGTGTCGCCCCACCCCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCAGTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTAccgt < 2:1076462/151‑3 (MQ=18)
ccGCTCCTACATCACCCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGtt < 2:2093337/151‑1 (MQ=21)
gCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGt < 2:146081/151‑1 (MQ=21)
cTCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTa < 1:1153748/151‑1 (MQ=21)
tCCTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAg < 1:5134300/151‑1 (MQ=21)
gcattcATCAACCGGCACCGTCGCCCCGCCCCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAg < 1:1343787/146‑1 (MQ=17)
cTACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGa < 1:4585742/151‑1 (MQ=21)
cTACATCAACCGGCGCTGTCGCCACGCACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGa < 2:4153682/151‑1 (MQ=17)
tACATCAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGgaggag > 1:1567775/1‑151 (MQ=255)
cAACCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCaa > 2:310177/1‑115 (MQ=255)
aCCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCAc < 2:3246766/129‑1 (MQ=18)
aCCGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAccgtc > 2:796585/1‑121 (MQ=255)
ccGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACcgccgc < 2:5078481/91‑1 (MQ=255)
cGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCAc < 1:4867502/151‑1 (MQ=21)
cGGTGGTGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCAc < 1:4514439/151‑1 (MQ=21)
ggtggtGTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAg > 1:1667585/1‑141 (MQ=21)
gtggtgTCGCCCCACCCCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCAccc < 2:729721/151‑1 (MQ=21)
gtggtgTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCAccc < 1:3840406/151‑1 (MQ=21)
gtggtgTCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCAccgtc > 2:3864194/1‑117 (MQ=255)
cgacgtCGCCCCGCTCCGCCGTAGGAGCGGGGGCACCCGCGAATAGGCCGGACCTGCCGCCCAATGCCGCCAGTCATTCCCCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCACCCTTGTAGGAGCGGGTTCACCcg < 2:2632345/147‑1 (MQ=21)
gtgtCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCcgcg < 1:4229349/151‑1 (MQ=21)
gtCGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAg < 2:4713017/69‑1 (MQ=255)
cGCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTCCCGTTGTAGGAGCGGGTTCACCCGCGAATa > 1:2105780/1‑151 (MQ=21)
gccacgtacCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCCGACCTGCCGCACAAAACCCCCGGGCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCGCCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAg < 1:3946591/144‑1 (MQ=18)
gCCCCACACCGTCGTCGGAGCAGGTTCACCCGTGAATCGGCCGGACCTGCCGCCCAATGCCTCCAGTCCTTCCCCGCCGCACCCGCCTCCGCATTCATCAATCGGCACCGTCGCCACGTACCGTGGTGGGAGCGGGTTCACCCGCGAATAg < 2:2716977/151‑1 (MQ=255)
gCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAg < 2:605627/151‑1 (MQ=21)
gCCCCACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAg < 2:2802508/151‑1 (MQ=21)
ccacgcacCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCCCGCCCCCTTGTAGCTGCGGGTGCACCCGCGAATAgg > 1:4437614/6‑151 (MQ=17)
cccACACCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGc < 1:1901763/151‑1 (MQ=21)
acgtacCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCAt < 1:4298932/87‑1 (MQ=255)
gtacCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGc < 2:225690/107‑1 (MQ=255)
acacCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGTACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCgg < 1:4718103/151‑1 (MQ=21)
cacCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCTCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTa > 2:2353183/1‑122 (MQ=255)
cacCGTCGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTa < 1:2353183/122‑1 (MQ=255)
acCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCAc < 1:3890854/67‑1 (MQ=35)
acCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGAc > 1:3206917/1‑151 (MQ=255)
ccGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATCCCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGAcc < 1:966627/151‑1 (MQ=255)
cGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATGCCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCt < 1:2029398/151‑1 (MQ=255)
ttGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGCGTTCACCCGCGAATAGGCCAGACCTgc > 2:685241/1‑151 (MQ=255)
tGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCa > 2:4320004/1‑98 (MQ=255)
tGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCCGCCACCGCATTCATCAATCGGCACCGTCGCCACGCCCCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTgcc < 1:4085778/151‑1 (MQ=255)
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GGTGCGCGGGATGACAGCGTGGCGATGCAGTTCCTGATTCCGGGTTGGAGCTTCGATAACAAACGGCCTTGCCTGGTGCGTTGAGGCTGCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACATCAACCGGTGGTGTCGCCCCACACCGTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCCGCCCAATACCCCCAGTCATTCACCGCCGCACCTGCCACCGCATTCATCAATCGGCACCATCGCCACGCACCCTTGTAGGAGCGGGTTCACCCGCGAATAGGCCGGACCTGCC > CP009974/2910013‑2910311
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
