Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F224 I0 R1 1457 284.0 9290224 95.7% 8890744 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,324,066 C→A 15.9% E350* (GAA→TAA)  obgE ← GTPase involved in cell partioning and DNA repair

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,324,0660CA15.9% 683.1 / 76.3 214E350* (GAA→TAA) obgEGTPase involved in cell partioning and DNA repair
Reads supporting (aligned to +/- strand):  ref base C (91/86);  new base A (22/12);  total (116/98)
Fisher's exact test for biased strand distribution p-value = 1.90e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 216 total aligned reads displayed.

TGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGA  >  CP009273/3323917‑3324215
                                                                                                                                                     |                                                                                                                                                     
tGATTTGGTGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTc                                                                                                                                                       <  1:1514569/150‑1 (MQ=255)
  aTTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGa                                                                                                                                                     <  1:1292165/150‑1 (MQ=255)
    ttGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACt                                                                                                                                                   <  2:3226186/150‑1 (MQ=255)
    ttGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACt                                                                                                                                                   >  1:3337472/1‑150 (MQ=255)
     tGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACtt                                                                                                                                                  <  1:797898/150‑1 (MQ=255)
       gCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTtc                                                                                                                                                >  2:4187759/1‑150 (MQ=255)
       gCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTtc                                                                                                                                                <  2:2462588/150‑1 (MQ=255)
        cGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTtct                                                                                                                                               >  1:4045378/1‑150 (MQ=255)
         gTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTtctc                                                                                                                                              >  1:3412541/1‑150 (MQ=255)
          tttATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTctct                                                                                                                                             <  2:706848/150‑1 (MQ=255)
          tttATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTctct                                                                                                                                             <  2:4530859/150‑1 (MQ=255)
            tATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTgg                                                                                                                                           <  1:4080128/150‑1 (MQ=255)
            tATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTgg                                                                                                                                           <  1:3951419/150‑1 (MQ=255)
              tcatcaGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCt                                                                                                                                         <  2:2324851/150‑1 (MQ=255)
              tcatcaGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCt                                                                                                                                         <  2:2544894/150‑1 (MQ=255)
               catcaGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTg                                                                                                                                        >  1:2521578/1‑150 (MQ=255)
                atcaGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGt                                                                                                                                       <  1:3858780/150‑1 (MQ=255)
                atcaGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGt                                                                                                                                       <  1:1249384/150‑1 (MQ=255)
                atcaGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGt                                                                                                                                       >  1:1189439/1‑150 (MQ=255)
                 tcaGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGtt                                                                                                                                      <  1:3591997/150‑1 (MQ=255)
                 tcaGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGtt                                                                                                                                      <  2:3101952/150‑1 (MQ=255)
                        ttAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGcttc                                                                                                                               <  1:1145918/150‑1 (MQ=255)
                         tAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGcttct                                                                                                                              >  2:414323/1‑150 (MQ=255)
                         tAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGcttct                                                                                                                              >  2:414333/1‑150 (MQ=255)
                          aaCGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCCAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGcttctt                                                                                                                             <  1:624864/150‑1 (MQ=255)
                          aaCGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGcttctt                                                                                                                             <  1:2791315/150‑1 (MQ=255)
                          aaCGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGcttctt                                                                                                                             >  1:622600/1‑150 (MQ=255)
                          aaCGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGcttctt                                                                                                                             >  1:2004650/1‑150 (MQ=255)
                          aaCGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGcttctt                                                                                                                             <  2:4344508/150‑1 (MQ=255)
                          aaCGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGcttctt                                                                                                                             >  1:4466738/1‑150 (MQ=255)
                            cGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCa                                                                                                                           <  1:987655/150‑1 (MQ=255)
                            cGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCa                                                                                                                           <  2:1442483/150‑1 (MQ=255)
                            cGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCa                                                                                                                           <  1:3430538/150‑1 (MQ=255)
                                 gTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTg                                                                                                                      >  1:1492609/1‑150 (MQ=255)
                                 gTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTg                                                                                                                      >  2:633883/1‑150 (MQ=255)
                                    aaTGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCAc                                                                                                                   <  2:3393546/150‑1 (MQ=255)
                                        aaCTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGAcc                                                                                                               >  2:2120823/1‑150 (MQ=255)
                                        aaCTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGAcc                                                                                                               >  2:2120707/1‑150 (MQ=255)
                                        aaCTCAACGCCTTCGTCGTCGTCTTCGTCCCAGACGTCATCCCAGTCTTCATCATCCTCTACAGCAATCTCTTCACGCTGCTGGCGATGATAATCAGCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGccc                                                                                                               <  1:2399400/150‑1 (MQ=255)
                                         aCTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCg                                                                                                              >  2:4396460/1‑150 (MQ=255)
                                          cTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCgg                                                                                                             <  2:3622513/150‑1 (MQ=255)
                                          cTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCgg                                                                                                             >  1:536009/1‑150 (MQ=255)
                                            cAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGt                                                                                                           >  1:1339852/1‑150 (MQ=255)
                                            cAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGt                                                                                                           >  2:1035604/1‑150 (MQ=255)
                                            cAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGt                                                                                                           >  1:2619261/1‑150 (MQ=255)
                                             aaCGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGtt                                                                                                          >  2:1487716/1‑150 (MQ=255)
                                                   ttcttcGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAAt                                                                                                    >  2:727982/1‑150 (MQ=255)
                                                    tcttcGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATg                                                                                                   <  1:3056222/150‑1 (MQ=255)
                                                     cttcGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGa                                                                                                  >  2:761780/1‑150 (MQ=255)
                                                       tcgtcgTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATa                                                                                                <  2:1845079/150‑1 (MQ=255)
                                                       tcgtcgTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATa                                                                                                >  2:1211957/1‑150 (MQ=255)
                                                       tcgtcgTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATa                                                                                                <  2:815590/150‑1 (MQ=255)
                                                       tcgtcgTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATACGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATa                                                                                                >  2:3275612/1‑150 (MQ=255)
                                                             tcTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGtc                                                                                          <  1:701489/150‑1 (MQ=255)
                                                             tcTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGtc                                                                                          >  2:2944264/1‑150 (MQ=255)
                                                                   tCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATcaca                                                                                    >  1:1676997/1‑150 (MQ=255)
                                                                     ccAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATc                                                                                  >  1:3661932/1‑150 (MQ=255)
                                                                       aGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATccc                                                                                >  2:439271/1‑150 (MQ=255)
                                                                       aGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATccc                                                                                >  1:3617939/1‑150 (MQ=255)
                                                                            tcATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCcagcag                                                                           <  2:2957261/150‑1 (MQ=255)
                                                                                   aGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCtt                                                                    >  2:2105946/1‑150 (MQ=255)
                                                                                    gTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCttt                                                                   >  1:565944/1‑150 (MQ=255)
                                                                                     tCTTCATCATCCTCTTCAGCAATCTCTTCACGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTc                                                                  <  1:1638258/150‑1 (MQ=255)
                                                                                       ttCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACACCCCAGCAGAGATCTTTCAc                                                                >  1:1754311/1‑150 (MQ=255)
                                                                                         catcatCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGc                                                              >  2:3496318/1‑150 (MQ=255)
                                                                                         catcatCCTCTACAGCAATCTCTTCAATATTCAGGCGATGATAATCAACCCACATGAATTCGAATTACTATGGCTGTTTCGATTATTCACCCAGCACGAACGGGTAATCAATGATAAAGGTCATCCAATCCCAGCAGAGATCTTTCACGc                                                              >  2:3496345/1‑150 (MQ=255)
                                                                                            catcCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCa                                                           <  2:4255071/150‑1 (MQ=255)
                                                                                             atcCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAg                                                          >  2:3550205/1‑150 (MQ=255)
                                                                                             atcCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCACAg                                                          >  1:2720893/1‑150 (MQ=255)
                                                                                              tcCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGt                                                         >  1:3470577/1‑150 (MQ=255)
                                                                                                ctctTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTcc                                                       >  1:2243895/1‑150 (MQ=255)
                                                                                                   ttCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt                                                    >  1:4605452/1‑150 (MQ=255)
                                                                                                     cAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTcg                                                  <  1:2253621/150‑1 (MQ=255)
                                                                                                             tctTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCagag                                          >  2:3035994/1‑150 (MQ=255)
                                                                                                              ctTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAgaga                                         <  1:3193689/150‑1 (MQ=255)
                                                                                                              ctTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAgaga                                         <  2:4011669/150‑1 (MQ=255)
                                                                                                               ttCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGAt                                        <  2:2004650/150‑1 (MQ=255)
                                                                                                               ttCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGAt                                        <  2:622600/150‑1 (MQ=255)
                                                                                                                 cAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCa                                      <  1:3585947/150‑1 (MQ=255)
                                                                                                                  aaGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAg                                     >  1:2908648/1‑150 (MQ=255)
                                                                                                                  aaGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAg                                     >  2:1889551/1‑150 (MQ=255)
                                                                                                                  aaGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAg                                     >  1:1014672/1‑150 (MQ=255)
                                                                                                                      tgctgGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGataa                                 >  1:881375/1‑150 (MQ=255)
                                                                                                                       gctgGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGataat                                >  2:154890/1‑150 (MQ=255)
                                                                                                                            cGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTa                           >  1:1192668/1‑150 (MQ=255)
                                                                                                                            cGATGATAATCATCCCACATGAATTAGACTNTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTa                           >  1:4284951/1‑150 (MQ=255)
                                                                                                                             gatgatAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTAt                          >  1:1909973/1‑150 (MQ=255)
                                                                                                                              atgatAATCATCACACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAATGGTCATCACATCCAAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATc                         <  2:4068528/150‑1 (MQ=255)
                                                                                                                                gatAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCtt                       >  2:4394240/1‑150 (MQ=255)
                                                                                                                                 atAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTc                      >  1:2197316/1‑150 (MQ=255)
                                                                                                                                    atcatcCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCACAGAGATCAGATAATATTTATCTTccca                   <  2:2541474/150‑1 (MQ=255)
                                                                                                                                       atcCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTcccagcc                >  1:1948696/1‑150 (MQ=255)
                                                                                                                                         cccACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTcccagccca              <  2:3470553/150‑1 (MQ=255)
                                                                                                                                          ccACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCCCGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTcccagcccag             >  1:667531/1‑150 (MQ=255)
                                                                                                                                            acaTGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAgcg           >  1:755275/1‑150 (MQ=255)
                                                                                                                                             caTGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAgcgc          <  1:4187759/150‑1 (MQ=255)
                                                                                                                                              aTGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGcc         >  1:3983634/1‑150 (MQ=255)
                                                                                                                                               tGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGAGAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCt        <  1:1724866/150‑1 (MQ=255)
                                                                                                                                                   ttCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGc    <  2:287800/150‑1 (MQ=255)
                                                                                                                                                     cGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGa  >  1:2373448/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGA  >  CP009273/3323917‑3324215

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A