Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F204 I0 R1
|
1155 |
255.8 |
8356456 |
95.7% |
7997128 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,324,066 |
C→A |
39.8% |
E350* (GAA→TAA) |
obgE ← |
GTPase involved in cell partioning and DNA repair |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,324,066 | 0 | C | A | 39.8%
| 277.8
/ 259.1
| 226 | E350* (GAA→TAA) | obgE | GTPase involved in cell partioning and DNA repair |
| Reads supporting (aligned to +/- strand): ref base C (81/55); new base A (60/30); total (141/85) |
| Fisher's exact test for biased strand distribution p-value = 3.27e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 |
Only 100 of 227 total aligned reads displayed.
TGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAG > CP009273/3323917‑3324212
|
tGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTc < 1:2095413/150‑1 (MQ=255)
ttGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACt < 1:2996295/150‑1 (MQ=255)
ttGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACt < 2:3385808/150‑1 (MQ=255)
tGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACtt < 1:1000734/150‑1 (MQ=255)
ggCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACttt > 1:742579/1‑150 (MQ=255)
gCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTtc < 1:75870/150‑1 (MQ=255)
gCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTtc < 2:1063443/150‑1 (MQ=255)
gTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTtctc > 1:288562/1‑150 (MQ=255)
gTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTtctc < 2:2471021/150‑1 (MQ=255)
gTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTtctc < 1:727182/150‑1 (MQ=255)
gTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTtctc < 2:389056/150‑1 (MQ=255)
tttATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTctct > 1:1024361/1‑150 (MQ=255)
tATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTgg > 1:1316487/1‑150 (MQ=255)
atcatcAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGc > 1:1117250/1‑150 (MQ=255)
tcatcaGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCt > 1:1566901/1‑150 (MQ=255)
catcaGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTg > 1:2652568/1‑150 (MQ=255)
tcaGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGtt < 2:1862848/150‑1 (MQ=255)
aGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTc < 2:593679/150‑1 (MQ=255)
agATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGACCCAGTCGTCATCCCAGTCATCATCATCCTCTTCAGCAATCTCTTCAATCTGCTGGCGATGATAATCATACCACATGAATTAGACTTTCACTGGCTGTTTAGc > 2:244472/2‑150 (MQ=255)
gATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGct > 1:2754295/1‑150 (MQ=255)
gCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAg > 1:3538133/1‑150 (MQ=255)
ttGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGcc > 1:878333/1‑150 (MQ=255)
tGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCt < 1:1163948/150‑1 (MQ=255)
gTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTg < 2:237454/150‑1 (MQ=255)
gTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTg < 1:384835/150‑1 (MQ=255)
tAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGc > 1:67337/1‑150 (MQ=255)
aaaTGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCa > 2:1214823/1‑150 (MQ=255)
aaaTGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCa < 1:1673840/150‑1 (MQ=255)
aTGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACg > 1:2522568/1‑150 (MQ=255)
aTGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACg > 1:2504626/1‑150 (MQ=255)
gAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGAc > 1:1580262/1‑150 (MQ=255)
aaCTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGAcc > 2:697457/1‑150 (MQ=255)
aCGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGttt > 1:4027573/1‑150 (MQ=255)
cGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGtttt < 2:298179/150‑1 (MQ=255)
tcttcGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATg > 1:3147796/1‑150 (MQ=255)
cgtcgtCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATaa < 2:327211/150‑1 (MQ=255)
gtcgtcTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATaaa > 1:1681766/1‑150 (MQ=255)
tcgtcTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAg < 2:2111499/150‑1 (MQ=255)
gtcTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGt > 1:1517747/1‑150 (MQ=255)
gtcTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGt < 2:1901277/150‑1 (MQ=255)
gtcTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGt > 1:4051274/1‑150 (MQ=255)
tcTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGtc < 2:1396474/150‑1 (MQ=255)
ttCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGtcat < 1:1721270/150‑1 (MQ=255)
gTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCACGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATcac < 1:9479/150‑1 (MQ=255)
gTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATcac > 1:1916589/1‑150 (MQ=255)
gTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATcac > 1:2406441/1‑150 (MQ=255)
gTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAAACTCTTCAAGCTGCTGGCGATGATAATAATCACACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATaac > 1:2309788/1‑150 (MQ=255)
tCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATcaca > 1:1120459/1‑150 (MQ=255)
ccAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATc < 2:3793613/150‑1 (MQ=255)
cAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATcc > 2:318147/1‑150 (MQ=255)
aTCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCagag > 1:2779696/1‑150 (MQ=255)
aGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCtt < 2:1387196/150‑1 (MQ=255)
gTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCttt > 1:1148249/1‑150 (MQ=255)
tCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACCTGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTc > 2:2705189/1‑150 (MQ=255)
tCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTc > 2:1240584/1‑150 (MQ=255)
cTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCa > 1:774708/1‑150 (MQ=255)
cTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCa > 2:2012769/1‑150 (MQ=255)
catcatCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGc > 1:3776589/1‑150 (MQ=255)
atcatcCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGcc > 2:3753222/1‑150 (MQ=255)
atcatcCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGcc > 1:3558778/1‑150 (MQ=255)
catcCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCa < 2:2381918/150‑1 (MQ=255)
atcCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAg > 1:2354361/1‑150 (MQ=255)
ttCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACt < 1:2862203/150‑1 (MQ=255)
tCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTc < 1:59219/150‑1 (MQ=255)
tCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTc < 1:98780/150‑1 (MQ=255)
cAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTcg < 1:866422/150‑1 (MQ=255)
aGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTcgc > 1:3629874/1‑150 (MQ=255)
gCAATCTCTTCACGCTGCTGGCGATGATAATCATCCCACATTAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTcgcc < 1:912711/150‑1 (MQ=255)
tctTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCagag < 2:3631976/150‑1 (MQ=255)
ctTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAgaga > 2:2319955/1‑150 (MQ=255)
ctTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAgaga > 1:2567860/1‑150 (MQ=255)
aaGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAg > 1:2173274/1‑150 (MQ=255)
aaGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAg > 1:2957369/1‑150 (MQ=255)
aaGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAg > 2:2521969/1‑150 (MQ=255)
aGCTGCTGGCGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGa > 1:924156/1‑150 (MQ=255)
tgctgGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGataa > 1:1163473/1‑150 (MQ=255)
cGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTa < 1:4003489/150‑1 (MQ=255)
cGATGATAATCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTa < 2:182896/150‑1 (MQ=255)
gatAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCtt < 2:2156352/150‑1 (MQ=255)
atAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTc < 2:4119610/150‑1 (MQ=255)
aaTCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTccc > 1:1036176/1‑150 (MQ=255)
aaTCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATACCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTccc > 1:2440956/1‑150 (MQ=255)
aaTCATCCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTccc > 2:659048/1‑150 (MQ=255)
atcatcCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTccca > 2:302488/1‑150 (MQ=255)
atcatcCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTccca > 1:2242660/1‑150 (MQ=255)
tcatcCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTcccag > 1:4115637/1‑150 (MQ=255)
tcatcCCACATGAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTcccag > 1:4115653/1‑150 (MQ=255)
atcCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTcccagcc > 2:417055/1‑150 (MQ=255)
ccACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTcccagcccag < 2:756215/150‑1 (MQ=255)
ccACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTcccagcccag > 2:609010/1‑150 (MQ=255)
acaTGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAgcg > 1:423346/1‑150 (MQ=255)
acaTGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAgcg > 2:1933205/1‑150 (MQ=255)
acaTGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAgcg > 1:3765757/1‑150 (MQ=255)
caTTAATTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAgcgc > 1:228189/1‑150 (MQ=255)
aTGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGcc > 1:2263365/1‑150 (MQ=255)
tGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCt < 2:2047213/150‑1 (MQ=255)
aaTTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCa > 2:4053571/1‑150 (MQ=255)
aTTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAg < 1:205247/150‑1 (MQ=255)
aTTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAg > 2:3502492/1‑150 (MQ=255)
aTTAGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAg > 1:3290669/1‑150 (MQ=255)
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TGATTTGGCGTTTATCATCAGTGATTAACGCTTGTAAATGAACTCAACGCCTTCTTCGTCGTCTTCGTCCCAGTCGTCATCCCAGTCTTCATCATCCTCTTCAGCAATCTCTTCAAGCTGCTGGCGATGATAATCATCCCACATGAATTCGACTTTCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAG > CP009273/3323917‑3324212
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
