Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F86 I0 R1 593 297.4 9515568 94.4% 8982696 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,324,218 G→T 6.2% A299E (GCG→GAG)  obgE ← GTPase involved in cell partioning and DNA repair

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,324,2180GT 6.2% 948.0 / 29.8 250A299E (GCG→GAG) obgEGTPase involved in cell partioning and DNA repair
Reads supporting (aligned to +/- strand):  ref base G (111/123);  new base T (11/5);  total (122/128)
Fisher's exact test for biased strand distribution p-value = 1.23e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 274 total aligned reads displayed.

TCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATACGCGCGTTTTCAACCGGATCGGTGCCGTCAATC  >  CP009273/3324072‑3324367
                                                                                                                                                  |                                                                                                                                                     
tctcTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGAtcgctt                                                                                                                                                    <  2:2335892/150‑1 (MQ=255)
tctcTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGAtcgctt                                                                                                                                                    >  1:1741322/1‑150 (MQ=255)
  tctGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGAtcgctttc                                                                                                                                                  <  2:1576947/150‑1 (MQ=255)
   ctGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGAtcgctttcg                                                                                                                                                 <  1:4635530/150‑1 (MQ=255)
   ctGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGAtcgctttcg                                                                                                                                                 >  2:3329404/1‑150 (MQ=255)
     ggCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGAtcgctttcgct                                                                                                                                               <  2:1649574/150‑1 (MQ=255)
     ggCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGAtcgctttcgct                                                                                                                                               <  2:3003177/150‑1 (MQ=255)
         gTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTtct                                                                                                                                           <  1:4720305/150‑1 (MQ=255)
          tttCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTtctc                                                                                                                                          <  1:214150/150‑1 (MQ=255)
              gCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCg                                                                                                                                      >  1:2750324/1‑150 (MQ=255)
                ttcttcAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGc                                                                                                                                    >  1:3721574/1‑150 (MQ=255)
                 tcttcAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCt                                                                                                                                   <  2:2671375/150‑1 (MQ=255)
                   ttcAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTc                                                                                                                                 >  1:1328517/1‑150 (MQ=255)
                    tcAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCt                                                                                                                                <  2:798500/150‑1 (MQ=255)
                        ccTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCt                                                                                                                            <  2:1348628/150‑1 (MQ=255)
                          tGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTa                                                                                                                          <  1:2407392/150‑1 (MQ=255)
                          tGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTa                                                                                                                          >  2:4578535/1‑150 (MQ=255)
                          tGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTa                                                                                                                          <  2:537843/150‑1 (MQ=255)
                          tGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTa                                                                                                                          <  1:3846369/150‑1 (MQ=255)
                          tGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTa                                                                                                                          <  1:1823078/150‑1 (MQ=255)
                             aCGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATcc                                                                                                                       >  1:4087388/1‑150 (MQ=255)
                              cGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCca                                                                                                                      >  1:3463139/1‑150 (MQ=255)
                                  cGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCcagcag                                                                                                                  <  1:281809/150‑1 (MQ=255)
                                  cGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCcagcag                                                                                                                  <  1:1410546/150‑1 (MQ=255)
                                        ttCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAgatcgat                                                                                                            <  2:2880981/150‑1 (MQ=255)
                                         tCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAgatcgatc                                                                                                           >  2:58414/1‑150 (MQ=255)
                                           aaTGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAgatcgatcgt                                                                                                         <  1:2049400/150‑3 (MQ=255)
                                           aaTGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCtt                                                                                                         <  1:3348714/150‑1 (MQ=255)
                                           aaTGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCtt                                                                                                         >  1:2322594/1‑150 (MQ=255)
                                            aTGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCttg                                                                                                        >  1:2784869/1‑150 (MQ=255)
                                              gATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCttgtt                                                                                                      <  2:4274186/150‑1 (MQ=255)
                                               aTAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCttgttg                                                                                                     >  2:3491787/1‑150 (MQ=255)
                                                  aaGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAac                                                                                                  >  2:1770784/1‑150 (MQ=255)
                                                     gTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACt                                                                                               >  1:2870980/1‑150 (MQ=255)
                                                        atcaCATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAAc                                                                                            <  2:3182891/150‑1 (MQ=255)
                                                         tcaCATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAAcc                                                                                           <  1:4591042/150‑1 (MQ=255)
                                                         tcaCATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAAcc                                                                                           <  2:1130197/150‑1 (MQ=255)
                                                         tcaCATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAAcc                                                                                           >  2:3031793/1‑150 (MQ=255)
                                                            caTCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAAc                                                                                        <  2:282410/150‑1 (MQ=255)
                                                            caTCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAAc                                                                                        <  2:1837370/150‑1 (MQ=255)
                                                             aTCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAAcg                                                                                       >  2:3807765/1‑150 (MQ=255)
                                                               cccAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAAcgcg                                                                                     >  1:4151776/1‑150 (MQ=255)
                                                                    cagAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTtc                                                                                <  2:2569639/150‑1 (MQ=255)
                                                                    cagAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTtc                                                                                >  1:3194998/1‑150 (MQ=255)
                                                                        gaTCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTtcgtcg                                                                            >  1:2698496/1‑150 (MQ=255)
                                                                            tttCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAg                                                                        <  2:2750324/150‑1 (MQ=255)
                                                                               cACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATc                                                                     <  2:4609370/150‑1 (MQ=255)
                                                                               cACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATc                                                                     <  2:4379751/150‑1 (MQ=255)
                                                                                       gTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGt                                                             >  1:1108038/1‑150 (MQ=255)
                                                                                        tCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTa                                                            >  1:1003207/1‑150 (MQ=255)
                                                                                          cACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTAtt                                                          <  2:1371311/150‑1 (MQ=255)
                                                                                          cACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCGTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTTAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTAtt                                                          >  1:4019505/1‑150 (MQ=255)
                                                                                            cTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTAtttt                                                        <  1:3264692/150‑1 (MQ=255)
                                                                                             tCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTAttttt                                                       <  1:1692906/150‑1 (MQ=255)
                                                                                              cgccgcAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTc                                                      <  1:2779378/150‑1 (MQ=255)
                                                                                                 cgcAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAg                                                   >  1:4691600/1‑150 (MQ=255)
                                                                                                  gcAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGc                                                  >  2:1012991/1‑150 (MQ=255)
                                                                                                   cAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCt                                                 <  2:2517492/150‑1 (MQ=255)
                                                                                                   cAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCt                                                 <  2:102719/150‑1 (MQ=255)
                                                                                                    agagATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCTCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTc                                                >  2:1447554/1‑150 (MQ=255)
                                                                                                    agagATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCTCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTc                                                >  2:3838891/1‑150 (MQ=255)
                                                                                                    agagATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTc                                                >  2:3701780/1‑150 (MQ=255)
                                                                                                     gagaTCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTA‑TTTTCCAGCTCGc                                              >  2:3382509/1‑150 (MQ=255)
                                                                                                      agaTCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCTCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGc                                              <  1:735814/150‑1 (MQ=255)
                                                                                                      agaTCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGc                                              >  2:728839/1‑150 (MQ=255)
                                                                                                      agaTCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGc                                              >  2:3099214/1‑150 (MQ=255)
                                                                                                       gaTCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCt                                             >  2:1062575/1‑150 (MQ=255)
                                                                                                       gaTCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCt                                             <  2:3632205/150‑1 (MQ=255)
                                                                                                        aTCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCATCGGCTTATACCTTATCCAGCAGAACGATCTTGTTGAACACAAACCAACGCGGTTTCGTCGCCAGATCCGGGCTGTATTTTTCCCGCTCGcgg                                            >  1:1623540/1‑148 (MQ=255)
                                                                                                         tCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGa                                           >  2:3121314/1‑150 (MQ=255)
                                                                                                            gATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGataa                                        <  1:1530662/150‑1 (MQ=255)
                                                                                                              taataTTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCGGataata                                      >  1:4457104/1‑150 (MQ=255)
                                                                                                               aataTTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTATCTTAGGCGTCTAACTTATCCAGCAGATCGATATTTTTGAAAACAAAACAACGCGGTTTAGTCGCCACATCCTGGCTTTATTTTTACACCTCGCTGagaataa                                     >  1:3606385/1‑150 (MQ=255)
                                                                                                                 tatTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGataataata                                   >  1:381178/1‑150 (MQ=255)
                                                                                                                  atTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGTCTTCTACCTTATCCAGCAGATCGATATTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTATTCCAGCTCGCTGATAATAATAc                                  >  2:2317292/1‑150 (MQ=255)
                                                                                                                  atTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCGGATAATAATAc                                  >  2:4695406/1‑150 (MQ=255)
                                                                                                                   tttATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATAcg                                 <  1:1947170/150‑1 (MQ=255)
                                                                                                                    ttATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATAcgc                                <  1:4578545/150‑1 (MQ=255)
                                                                                                                    ttATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATAcgc                                >  2:4541163/1‑150 (MQ=255)
                                                                                                                    ttATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATAcgc                                <  1:3024592/150‑1 (MQ=255)
                                                                                                                     tATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATAcgcg                               <  2:155994/150‑1 (MQ=255)
                                                                                                                       tCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCGTTCTCTTCGGCTTCTACCTTATCCAGCCGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATAcgcgcg                             >  1:4494511/1‑150 (MQ=255)
                                                                                                                        cTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATACGCGCGt                            <  1:500363/150‑1 (MQ=255)
                                                                                                                         ttCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACAAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCGGATACTAATACGCGCGtt                           >  1:558694/1‑150 (MQ=255)
                                                                                                                          tCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATACGCGCGttt                          <  1:3062178/150‑1 (MQ=255)
                                                                                                                            ccagcccagcGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTGGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATACGCGCGTTTTc                        <  2:501398/150‑1 (MQ=255)
                                                                                                                                   agcGCCTCAGCGATCTCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATACGCGCGTTTTCAACCGGa                 >  1:1476186/1‑150 (MQ=255)
                                                                                                                                   agcGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATACGCGCGTTTTCAACCGGa                 >  2:4363997/1‑150 (MQ=255)
                                                                                                                                    gcgcCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATACGCGCGTTTTCAACCGGAt                <  1:3895728/150‑1 (MQ=255)
                                                                                                                                      gcCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATACGCGCGTTTTCAACCGGATCg              >  2:577537/1‑150 (MQ=255)
                                                                                                                                       ccTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATACGCGCGTTTTCAACCGGATCgg             <  2:4053841/150‑1 (MQ=255)
                                                                                                                                        cTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACGAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATACGCGCGTTTTCAACCGGATCGGt            <  2:1247433/150‑1 (MQ=255)
                                                                                                                                          cAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATACGCGCGTTTTCAACCGGATCGGTGc          >  1:678165/1‑150 (MQ=255)
                                                                                                                                          cAGCGATCGCTTTCGCTTTATCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATACGCGCGTTTTCAACCGGATCGGTGc          >  2:1940232/1‑150 (MQ=255)
                                                                                                                                           aGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATACGCGCGTTTTCAACCGGATCGGTGcc         >  1:749403/1‑150 (MQ=255)
                                                                                                                                           aGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCATATACCGCAGATAGATCTTGTTGAAAACAAACCAACCCGGTTTCGTCGCCACATCCAGGCAGTATTTTTACAGCACGCTGATAAAAATACGCGCGTTTTAAACCGCATCGGTGcc         >  1:3245319/1‑150 (MQ=255)
                                                                                                                                              gATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATACGCGCGTTTTCAACCGGATCGGTGCCGTc      <  2:4027293/150‑1 (MQ=255)
                                                                                                                                              gATCGCTTTCGCTGTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTACCCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATACGCGCGTTTTCAACCGGATCGGTGCCGTc      <  2:470415/150‑1 (MQ=255)
                                                                                                                                                 cgctttcgctttCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATACGCGCGTTTACAACCGGATCGGTGCCGTCAAt   <  2:2101116/150‑1 (MQ=255)
                                                                                                                                                  gctttcgctttcTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTACAGCTCGCTGATAATAATACGCGCGTTTTCAACCGGATCGGTGCCGTCAATc  >  2:35253/1‑150 (MQ=255)
                                                                                                                                                  |                                                                                                                                                     
TCTCTGGCTGTTTCGCTTCTTCAGCCTGCACGACCGGGTTTTCAATGATAAAGGTCATCACATCCCAGCAGAGATCTTTCACGCCCAGTCCACTCGCCGCAGAGATCAGATAATATTTATCTTCCCAGCCCAGCGCCTCAGCGATCGCTTTCGCTTTCTCTTCGGCTTCTACCTTATCCAGCAGATCGATCTTGTTGAACACTAACCAACGCGGTTTCGTCGCCAGATCCTGGCTGTATTTTTCCAGCTCGCTGATAATAATACGCGCGTTTTCAACCGGATCGGTGCCGTCAATC  >  CP009273/3324072‑3324367

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A