Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F224 I0 R1 1457 284.0 9290224 95.7% 8890744 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,442,244 C→A 30.6% L95F (TTG→TTT)  rplP ← 50S ribosomal subunit protein L16

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,442,2440CA30.6% 583.9 / 233.6 290L95F (TTG→TTT) rplP50S ribosomal subunit protein L16
Reads supporting (aligned to +/- strand):  ref base C (92/109);  new base A (47/42);  total (139/151)
Fisher's exact test for biased strand distribution p-value = 3.08e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 292 total aligned reads displayed.

CTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCG  >  CP009273/3442095‑3442391
                                                                                                                                                     |                                                                                                                                                   
     gCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGc                                                                                                                                                >  2:3275427/1‑150 (MQ=255)
      cAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCa                                                                                                                                               <  2:176346/150‑1 (MQ=255)
      cAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCa                                                                                                                                               <  1:4549898/150‑1 (MQ=255)
       aGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCaa                                                                                                                                              <  2:1720534/150‑1 (MQ=255)
           ctTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCa                                                                                                                                          >  1:4608340/1‑150 (MQ=255)
            ttttGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCaa                                                                                                                                         <  1:3670252/150‑1 (MQ=255)
              ttGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATa                                                                                                                                       <  2:836173/150‑1 (MQ=255)
               tGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATAc                                                                                                                                      <  2:1484928/150‑1 (MQ=255)
                tcTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACt                                                                                                                                     >  2:896130/2‑150 (MQ=255)
                     cATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACg                                                                                                                                <  1:623874/150‑1 (MQ=255)
                     cATTACATCACCGTCTTAGTTACAAAGGCGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACg                                                                                                                                <  1:1503732/150‑1 (MQ=255)
                      aTTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGt                                                                                                                               >  2:3530096/1‑150 (MQ=255)
                       ttACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGtt                                                                                                                              >  2:2540011/1‑150 (MQ=255)
                        tACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGtta                                                                                                                             >  2:2190577/1‑150 (MQ=255)
                           aTCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttacct                                                                                                                          <  2:1373894/150‑1 (MQ=255)
                           aTCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttacct                                                                                                                          <  1:2232736/150‑1 (MQ=255)
                            tCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttacctt                                                                                                                         <  2:2625030/150‑1 (MQ=255)
                            tCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttacctt                                                                                                                         <  2:3622073/150‑1 (MQ=255)
                               ccGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttacctttac                                                                                                                      >  2:1556958/1‑150 (MQ=255)
                                cGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttacctttacc                                                                                                                     <  2:1041932/150‑1 (MQ=255)
                                     tAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACctttacctttac                                                                                                                >  1:1162194/1‑150 (MQ=255)
                                     tAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACctttacctttac                                                                                                                >  2:507808/1‑150 (MQ=255)
                                      aGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCtttacctttacc                                                                                                               <  2:2145674/150‑1 (MQ=255)
                                      aGTTACAAAGGTGGTTTTAATCGGCAGATTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCttaacctttacc                                                                                                               >  1:1683980/1‑150 (MQ=255)
                                       gTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTAccc                                                                                                              >  2:402024/1‑150 (MQ=255)
                                          aCAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATa                                                                                                           <  1:739391/150‑1 (MQ=255)
                                             aaGGTGTTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGc                                                                                                        >  1:1852654/1‑150 (MQ=255)
                                             aaGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGc                                                                                                        >  1:3211470/1‑150 (MQ=255)
                                             aaGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGc                                                                                                        >  2:1212841/1‑150 (MQ=255)
                                              aGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCa                                                                                                       >  2:2940334/1‑150 (MQ=255)
                                               ggtggtTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCAc                                                                                                      <  1:2015973/150‑1 (MQ=255)
                                                gtggtTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACt                                                                                                     >  1:3388807/1‑150 (MQ=255)
                                                gtggtTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACt                                                                                                     >  2:1233077/1‑150 (MQ=255)
                                                gtggtTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACt                                                                                                     >  2:4176649/1‑150 (MQ=255)
                                                gtggtTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACt                                                                                                     <  2:209025/150‑1 (MQ=255)
                                                gtggtTGTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACt                                                                                                     >  1:3111208/1‑150 (MQ=255)
                                                    ttttAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCa                                                                                                 >  2:2757411/1‑150 (MQ=255)
                                                    ttttAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCa                                                                                                 >  2:1696511/1‑150 (MQ=255)
                                                      ttAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGc                                                                                               <  1:2282027/150‑1 (MQ=255)
                                                       tAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCg                                                                                              <  2:2012997/150‑1 (MQ=255)
                                                        aaTCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTATCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCgg                                                                                             >  1:705333/1‑150 (MQ=255)
                                                          tCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCt                                                                                           >  2:4632082/1‑150 (MQ=255)
                                                          tCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCt                                                                                           >  2:2448325/1‑150 (MQ=255)
                                                           cGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCtt                                                                                          >  1:1396073/1‑150 (MQ=255)
                                                            ggCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCttt                                                                                         >  1:1633313/1‑150 (MQ=255)
                                                             gCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCtttt                                                                                        <  1:2675152/150‑1 (MQ=255)
                                                               aGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCa                                                                                      >  2:3146010/1‑150 (MQ=255)
                                                                gTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAg                                                                                     >  2:133653/1‑150 (MQ=255)
                                                                  ttCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTg                                                                                   >  1:24700/1‑150 (MQ=255)
                                                                    cGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGAt                                                                                 >  1:1258223/1‑150 (MQ=255)
                                                                    cGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGAt                                                                                 <  2:2740132/150‑1 (MQ=255)
                                                                     gctgctGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATc                                                                                <  2:2702957/150‑1 (MQ=255)
                                                                     gctgctGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATc                                                                                >  1:851394/1‑150 (MQ=255)
                                                                     gctgctGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATc                                                                                <  2:1125843/150‑1 (MQ=255)
                                                                        gctgcCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAAAACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGt                                                                             >  2:4251730/1‑150 (MQ=255)
                                                                          tgcCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGACTCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGttt                                                                           <  1:3693802/150‑1 (MQ=255)
                                                                           gcCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACTCCGTCCATTTCATACAGGACTTTACCCTGCTGAATAAAGGCAACCCAATACTCAACGTTACATTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTg                                                                          <  1:989811/150‑1 (MQ=255)
                                                                           gcCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTg                                                                          >  2:2323233/1‑150 (MQ=255)
                                                                           gcCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTg                                                                          >  1:2363059/1‑150 (MQ=255)
                                                                           gcCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTg                                                                          <  2:3009796/150‑1 (MQ=255)
                                                                              aGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTcc                                                                       <  2:1922313/150‑1 (MQ=255)
                                                                              aGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTcc                                                                       >  2:2222225/1‑150 (MQ=255)
                                                                                    aaTGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAac                                                                 >  1:2886091/1‑150 (MQ=255)
                                                                                     aTGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAaca                                                                <  2:1617715/150‑1 (MQ=255)
                                                                                      tGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAacac                                                               >  1:2977266/1‑150 (MQ=255)
                                                                                        cTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACGGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAacacac                                                             <  2:243510/150‑1 (MQ=255)
                                                                                         ttCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATCCTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACg                                                            <  2:739906/150‑1 (MQ=255)
                                                                                              gggCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATcc                                                       <  1:2164629/150‑1 (MQ=255)
                                                                                              gggCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATcc                                                       <  1:3455493/150‑1 (MQ=255)
                                                                                              gggCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATcc                                                       <  1:3602797/150‑1 (MQ=255)
                                                                                               ggCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCa                                                      >  1:1002888/1‑150 (MQ=255)
                                                                                               ggCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCa                                                      >  2:4480917/1‑150 (MQ=255)
                                                                                               ggCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCa                                                      <  2:248406/150‑1 (MQ=255)
                                                                                               ggCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCa                                                      >  1:3876659/1‑150 (MQ=255)
                                                                                               ggCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCa                                                      <  2:383184/150‑1 (MQ=255)
                                                                                                gCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAg                                                     <  2:662061/150‑1 (MQ=255)
                                                                                                  cAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGAt                                                   >  1:2165702/1‑150 (MQ=255)
                                                                                                   aGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATc                                                  >  2:2964271/1‑150 (MQ=255)
                                                                                                     ctctTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCtt                                                <  1:3993196/150‑1 (MQ=255)
                                                                                                       ctTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGTATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTAc                                              <  2:3082759/150‑1 (MQ=255)
                                                                                                       ctTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTAc                                              >  2:2873838/1‑150 (MQ=255)
                                                                                                          ccGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCtt                                           <  1:4177444/150‑1 (MQ=255)
                                                                                                          ccGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCtt                                           <  2:3555300/150‑1 (MQ=255)
                                                                                                              aaCACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACg                                       <  2:2402219/150‑1 (MQ=255)
                                                                                                                  ccGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTa                                   <  1:797568/150‑1 (MQ=255)
                                                                                                                    gTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAAc                                 >  1:2640651/1‑150 (MQ=255)
                                                                                                                     tCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACt                                <  1:3761519/150‑1 (MQ=255)
                                                                                                                      ccATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTg                               >  2:4372960/1‑150 (MQ=255)
                                                                                                                        aTTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCa                             <  2:795194/150‑1 (MQ=255)
                                                                                                                               aCAGGCCTTTACCCGGCTGAATCTTGGCAACCCTATACTCCACGTTACCTTTACCTTTAGCCAGTCGCACTTCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACTCACGGTTCCAGATCTTACCTTGACGCTTAACTGCACGGGTCa                      <  1:3017092/150‑1 (MQ=255)
                                                                                                                               aCAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCa                      <  2:39150/150‑1 (MQ=255)
                                                                                                                               aCAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCa                      <  2:3987203/150‑1 (MQ=255)
                                                                                                                                 aGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATa                    <  1:3294042/150‑1 (MQ=255)
                                                                                                                                 aGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATa                    <  2:3479410/150‑1 (MQ=255)
                                                                                                                                 aGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATa                    >  1:2961537/1‑150 (MQ=255)
                                                                                                                                   gACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGc                  >  1:542141/1‑150 (MQ=255)
                                                                                                                                   gACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGc                  >  2:720330/1‑150 (MQ=255)
                                                                                                                                          cccGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGt           <  1:2526010/150‑1 (MQ=255)
                                                                                                                                              gCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGtgctg       <  1:1599612/150‑1 (MQ=255)
                                                                                                                                                   aTCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCg  <  2:568591/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
CTCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCG  >  CP009273/3442095‑3442391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A