Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F247 I0 R1
|
1496 |
299.8 |
9582018 |
97.8% |
9371213 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,442,244 |
C→A |
7.2% |
L95F (TTG→TTT) |
rplP ← |
50S ribosomal subunit protein L16 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,442,244 | 0 | C | A | 7.2%
| 988.5
/ 32.9
| 264 | L95F (TTG→TTT) | rplP | 50S ribosomal subunit protein L16 |
| Reads supporting (aligned to +/- strand): ref base C (119/126); new base A (8/11); total (127/137) |
| Fisher's exact test for biased strand distribution p-value = 6.40e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01 |
Only 100 of 272 total aligned reads displayed.
TCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGA > CP009273/3442096‑3442392
|
tcACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATc < 2:3710292/149‑1 (MQ=255)
cGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAg > 2:3071423/1‑149 (MQ=255)
cAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGc < 1:3174912/149‑1 (MQ=255)
aGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCa > 1:2499321/1‑149 (MQ=255)
tctTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAAcc < 2:1441538/149‑1 (MQ=255)
tctTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAAcc < 2:3023541/149‑1 (MQ=255)
ctTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAAccc < 2:4419419/149‑1 (MQ=255)
ctTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAACTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAAccc < 2:2663512/149‑1 (MQ=255)
ttGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAAt > 2:498465/1‑149 (MQ=255)
tGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATa < 1:151783/149‑1 (MQ=255)
gCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATAc < 2:4111531/149‑1 (MQ=255)
tCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCa < 1:1470232/149‑1 (MQ=255)
tCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCa < 1:1382150/149‑1 (MQ=255)
cATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCAc > 2:4658651/1‑149 (MQ=255)
aTTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACg > 2:3880093/1‑149 (MQ=255)
ttACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGt < 2:3625272/149‑1 (MQ=255)
tACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGACCACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGtt > 2:472164/1‑149 (MQ=255)
aCATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGtta < 1:883655/149‑1 (MQ=255)
cATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGTTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttac > 2:539068/1‑149 (MQ=255)
cATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttac < 2:2699033/149‑1 (MQ=255)
cATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttac < 2:859277/149‑1 (MQ=255)
tCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttacct < 1:4409995/149‑1 (MQ=255)
tCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttacct < 2:1904503/149‑1 (MQ=255)
tCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttacct < 1:4760195/149‑1 (MQ=255)
cACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttacctt < 2:423496/149‑1 (MQ=255)
aCCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATAATCCACGttacattt > 2:4714447/1‑149 (MQ=255)
cGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttacctttac < 1:2641952/149‑1 (MQ=255)
gTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttacctttacc < 1:2076294/149‑1 (MQ=255)
gTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGttacctttacc > 1:2366271/1‑149 (MQ=255)
gTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGttacctttacc > 1:106733/1‑149 (MQ=255)
cTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTtacctttacctt > 1:2196843/1‑149 (MQ=255)
ttAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTacctttaccttt < 1:1165776/149‑1 (MQ=255)
tACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCa > 2:816231/1‑149 (MQ=255)
aCAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCAt > 2:436697/1‑149 (MQ=255)
aCAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCAt > 1:3857888/1‑149 (MQ=255)
aCAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCAt > 1:2908921/1‑149 (MQ=255)
aaaGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATAc > 1:4253876/1‑149 (MQ=255)
aaGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACACATACg > 2:2166880/1‑149 (MQ=255)
gtggtTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCAc > 1:1633346/1‑149 (MQ=255)
tggtTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACt > 1:4625835/1‑149 (MQ=255)
gtTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGc > 2:731869/1‑149 (MQ=255)
ttttAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGcc > 1:599116/1‑149 (MQ=255)
aTCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCgg > 2:1028857/1‑149 (MQ=255)
tCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGc > 2:3118356/1‑149 (MQ=255)
tCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGc > 1:1006477/1‑149 (MQ=255)
cGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCt < 1:1302811/149‑1 (MQ=255)
gCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCttt > 2:1086209/1‑149 (MQ=255)
gCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCttt < 1:3709375/149‑1 (MQ=255)
gCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCttt > 1:2743654/1‑149 (MQ=255)
gTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCCGCGGCTTTTCa > 1:3329910/1‑149 (MQ=255)
gctgctGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGAt > 2:1242512/1‑149 (MQ=255)
ctgctgCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATc > 2:1614151/1‑149 (MQ=255)
ctgctgCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATc < 2:1696655/149‑1 (MQ=255)
ctgcCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCAATTTAATACAGGACTTTACCCGGCTTAATCAAGGCAACCAAATTCTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGt < 1:4367511/149‑1 (MQ=255)
tgcCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGtt > 1:4066361/1‑149 (MQ=255)
tgcCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGtt > 1:2760391/1‑149 (MQ=255)
ccAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTg > 1:472454/1‑149 (MQ=255)
aGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTc > 2:3895291/1‑149 (MQ=255)
aGCTTGAATGCGTCACGGGCCAGCTCGTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCGAGGCAACCCACTACTCCCCGTTACCTTGACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTc < 2:2434617/149‑1 (MQ=255)
aTGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAac > 1:3452693/1‑149 (MQ=255)
tGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAaca < 1:4451423/149‑1 (MQ=255)
gCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAacac < 2:4082096/149‑1 (MQ=255)
gCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAacac > 2:1593286/1‑149 (MQ=255)
tCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACg < 1:3946085/149‑1 (MQ=255)
cACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACgg > 1:2860121/1‑149 (MQ=255)
cGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGAt > 2:3653662/1‑149 (MQ=255)
gggCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATc < 2:4705894/149‑1 (MQ=255)
gCTCTTCCGGAACACCGTCCATTTCATACCGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATc < 2:1338154/149‑1 (MQ=255)
gCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATc > 2:3879363/1‑149 (MQ=255)
gCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGagc > 1:2836142/1‑147 (MQ=255)
ctctTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCt < 1:624891/149‑1 (MQ=255)
ctctTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCt < 1:3263235/149‑1 (MQ=255)
ctctTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCt < 2:1200437/149‑1 (MQ=255)
ccGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCt < 2:3343536/149‑1 (MQ=255)
ggAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTg < 1:3366457/149‑1 (MQ=255)
aaCACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGAc < 2:2796387/149‑1 (MQ=255)
cacCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGc > 2:2610395/1‑149 (MQ=255)
cacCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGc < 2:1841950/149‑1 (MQ=255)
tCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAAc < 1:498465/149‑1 (MQ=255)
tttCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCa < 2:2288765/149‑1 (MQ=255)
tACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGt < 1:2975000/149‑1 (MQ=255)
aCAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTc < 2:3214049/149‑1 (MQ=255)
aCAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTc < 1:4220015/149‑1 (MQ=255)
aCAGGACTTTACCCGGCTGAATAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTc < 1:1834522/149‑1 (MQ=255)
ggACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGACCACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATa > 2:3963652/1‑149 (MQ=255)
ggACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATa < 2:2932874/149‑1 (MQ=255)
tttACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCac < 2:661508/149‑1 (MQ=255)
tACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCacga < 1:4114261/149‑1 (MQ=255)
aCCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCacgac > 2:1741966/1‑149 (MQ=255)
cccGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCacgacg > 1:681738/1‑149 (MQ=255)
ccGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGt < 1:3660695/149‑1 (MQ=255)
gCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGtgct > 1:4570727/1‑149 (MQ=255)
tGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGtgctgc > 1:2217321/1‑149 (MQ=255)
tGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGtgctgc > 2:588532/1‑149 (MQ=255)
gAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTgctgct > 2:2792505/1‑149 (MQ=255)
gAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTgctgct > 1:404124/1‑149 (MQ=255)
gAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTgctgct > 2:4301674/1‑149 (MQ=255)
aaTCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCtt > 1:1661055/1‑149 (MQ=255)
aaTCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCtt < 2:949442/149‑1 (MQ=255)
aaTAAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCtt < 1:1989226/149‑1 (MQ=255)
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TCACGCAGCTCTTTTGCTTTCATTACATCACCGTCTTAGTTACAAAGGTGGTTTTAATCGGCAGTTTCGCTGCTGCCAGCTTGAATGCTTCACGGGCCAGCTCTTCCGGAACACCGTCCATTTCATACAGGACTTTACCCGGCTGAATCAAGGCAACCCAATACTCCACGTTACCTTTACCTTTACCCATACGCACTGCCAGCGGCTTTTCAGTGATCGGTTTGTCCGGGAACACACGGATCCAGATCTTACCTTGACGCTTAACTGCACGGGTCATAGCACGACGTGCTGCTTCGA > CP009273/3442096‑3442392
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
