Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F54 I0 R1 640 319.5 10493376 95.3% 10000187 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 766,563 G→A 8.0% intergenic (+496/‑351) mngB → / → cydA alpha‑mannosidase/cytochrome d terminal oxidase, subunit I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273766,5630GA 8.0% 1037.7 / 55.8 316intergenic (+496/‑351)mngB/cydAalpha‑mannosidase/cytochrome d terminal oxidase, subunit I
Reads supporting (aligned to +/- strand):  ref base G (133/152);  new base A (8/17);  total (146/170)
Fisher's exact test for biased strand distribution p-value = 2.09e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.75e-01

Only 100 of 330 total aligned reads displayed.

AAGAATTAAGGTCAACCGTGCTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACAAAAACCTGTTTATT  >  CP009273/766414‑766712
                                                                                                                                                     |                                                                                                                                                     
 aGAATTAAGGTCAACCGTGCTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGa                                                                                                                                                      >  1:848243/1‑150 (MQ=255)
  gAATTAAGGTCAACCGTGCTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGaa                                                                                                                                                     >  1:4985309/1‑150 (MQ=255)
   taTTAAGGTCAACCGTGCTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTACAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAAt                                                                                                                                                    <  2:2576324/149‑1 (MQ=255)
    aTTAAGGTCAACCGTGCTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAAtt                                                                                                                                                   <  1:3713928/150‑1 (MQ=255)
      tAAGGTCAACCGTGCTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGa                                                                                                                                                 >  1:4967487/1‑150 (MQ=255)
      tAAGGTCAACCGTGCTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGa                                                                                                                                                 >  1:4967437/1‑150 (MQ=255)
      tAAGGTCAACCGTGCTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGa                                                                                                                                                 <  1:482916/150‑1 (MQ=255)
       aaGGTCAACCGTGCTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGat                                                                                                                                                <  2:2204971/150‑1 (MQ=255)
          gTCAACCGTGCTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATAtt                                                                                                                                             >  1:4271643/1‑150 (MQ=255)
          gTCAACCGTGCTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATAtt                                                                                                                                             >  1:176835/1‑150 (MQ=255)
          gTCAACCGTGCTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATAtt                                                                                                                                             >  1:2586850/1‑150 (MQ=255)
           tCAACCGTGCTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATAttt                                                                                                                                            >  1:781064/1‑150 (MQ=255)
            cAACCGTGCTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTa                                                                                                                                           >  1:578389/1‑150 (MQ=255)
                 gTGCTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAAt                                                                                                                                      >  1:4866497/1‑150 (MQ=255)
                   gCTGTTTTTGCTTCGTATCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGAAATTGATATTTATCAATGt                                                                                                                                    <  2:696488/150‑1 (MQ=255)
                    cTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGta                                                                                                                                   <  1:3209535/150‑1 (MQ=255)
                          ttGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTc                                                                                                                             <  2:2382615/150‑1 (MQ=255)
                          ttGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTc                                                                                                                             >  2:2098839/1‑150 (MQ=255)
                           tGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCt                                                                                                                            <  1:2415255/150‑1 (MQ=255)
                            gCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCtt                                                                                                                           >  1:3260737/1‑150 (MQ=255)
                            gCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCtt                                                                                                                           <  2:3471565/150‑1 (MQ=255)
                              ttCGTCTCTTTTTATCTTTAATTGCCAAACGAAACTAATTTCAGCATTATAACTCACACATTTTAAAAATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTgt                                                                                                                         >  2:1686052/1‑149 (MQ=255)
                               tCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGa                                                                                                                        >  2:1697365/1‑150 (MQ=255)
                                  tctcTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAAt                                                                                                                     <  2:1384398/150‑1 (MQ=255)
                                  tctcTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAAt                                                                                                                     <  2:2293400/150‑1 (MQ=255)
                                  tctcTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGACTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGTAATTGATATTTATCAATGAATAATTCTTGGAAAt                                                                                                                     >  2:4848413/1‑150 (MQ=255)
                                      tttttATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGc                                                                                                                 >  1:1610892/1‑150 (MQ=255)
                                         ttATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGAAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATc                                                                                                              <  1:3497573/150‑1 (MQ=255)
                                          tATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCa                                                                                                             <  2:782365/150‑1 (MQ=255)
                                             cTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCaaaa                                                                                                          >  2:1866178/1‑150 (MQ=255)
                                              tttAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCaaaaa                                                                                                         >  1:1482362/1‑150 (MQ=255)
                                               ttAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAag                                                                                                        <  2:2510459/150‑1 (MQ=255)
                                               ttAATTGCCAACCGAAACTAATTTCAGCCTAAAAACTCACACATAATAAACATAAATGTCACTAAAGTTACCTAATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAag                                                                                                        >  1:134470/1‑150 (MQ=255)
                                                tAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAATTCTTGGAAATGGGCATCAAAAaga                                                                                                       >  2:3776568/1‑150 (MQ=255)
                                                 aaTTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAagag                                                                                                      >  1:3926707/1‑150 (MQ=255)
                                                   ttGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGAt                                                                                                    <  1:41357/150‑1 (MQ=255)
                                                    tGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATa                                                                                                   <  1:2888159/150‑1 (MQ=255)
                                                       cAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAAt                                                                                                >  1:635900/1‑150 (MQ=255)
                                                             aaaCTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTtct                                                                                          <  1:800974/150‑1 (MQ=255)
                                                               aCTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCg                                                                                        >  2:5164661/1‑150 (MQ=255)
                                                               aCTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGAAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCg                                                                                        >  1:5017690/1‑150 (MQ=255)
                                                                cTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGa                                                                                       <  2:5044425/150‑1 (MQ=255)
                                                                  aaTTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATc                                                                                     >  1:2694538/1‑150 (MQ=255)
                                                                        aGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAATAGATAAATTGTTCTCGATAAATTTg                                                                               >  2:4935251/1‑150 (MQ=255)
                                                                        aGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTg                                                                               >  1:4720266/1‑150 (MQ=255)
                                                                        aGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTg                                                                               >  1:1063796/1‑150 (MQ=255)
                                                                          ccTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGc                                                                             <  2:1477301/150‑1 (MQ=255)
                                                                          ccTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGc                                                                             <  2:4086857/150‑1 (MQ=255)
                                                                          ccTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGAAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGc                                                                             >  2:5232204/1‑150 (MQ=255)
                                                                              ataACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGaa                                                                         <  1:2771338/150‑1 (MQ=255)
                                                                              ataACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGaa                                                                         >  2:2987085/1‑150 (MQ=255)
                                                                              ataACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGaa                                                                         >  2:4534617/1‑150 (MQ=255)
                                                                                    cacacaTTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTTGAAATGGGCATCAAAAAGAGATAAATTTTTCTCGATCAAATTGGCTGAAAGGCgg                                                                   >  2:3096186/1‑150 (MQ=255)
                                                                                    cacacaTTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCgg                                                                   >  2:462685/1‑150 (MQ=255)
                                                                                     acacaTTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGTCTGAAAGGCGGt                                                                  >  1:3639326/1‑150 (MQ=255)
                                                                                      cacaTTTTAAACATACATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTa                                                                 <  1:4473677/150‑1 (MQ=255)
                                                                                        caTTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAAt                                                               <  2:2876472/150‑1 (MQ=255)
                                                                                         aTTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAAtt                                                              >  1:2170855/1‑150 (MQ=255)
                                                                                          ttttAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGAAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAAttt                                                             <  1:1993114/150‑1 (MQ=255)
                                                                                               aaCATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCta                                                        >  2:1417500/1‑150 (MQ=255)
                                                                                                aCATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCtat                                                       >  1:3310583/1‑150 (MQ=255)
                                                                                                    aaaTGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTTATTTAGCTATAAAt                                                   >  2:2698160/1‑150 (MQ=255)
                                                                                                    aaaTGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAAt                                                   >  2:3974051/1‑150 (MQ=255)
                                                                                                        gTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGAt                                               <  1:518252/150‑1 (MQ=255)
                                                                                                           aCTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCAc                                            >  1:1089213/1‑150 (MQ=255)
                                                                                                           aCTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCAc                                            <  1:2091531/150‑1 (MQ=255)
                                                                                                              aaaGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGt                                         >  1:871095/1‑150 (MQ=255)
                                                                                                              aaaGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGt                                         >  2:432425/1‑150 (MQ=255)
                                                                                                              aaaGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGt                                         >  1:4191041/1‑150 (MQ=255)
                                                                                                               aaGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTc                                        <  1:4017606/150‑1 (MQ=255)
                                                                                                               aaGTTACCTTATTGAAACATGATTAACATAATTTGTAGAAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTc                                        <  2:5017690/150‑1 (MQ=255)
                                                                                                                aGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCg                                       <  2:4985309/150‑1 (MQ=255)
                                                                                                                      cTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAAt                                 <  1:1677552/150‑1 (MQ=255)
                                                                                                                          ttGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCaa                             <  2:1231237/150‑1 (MQ=255)
                                                                                                                           tGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCaaa                            >  1:3837335/1‑150 (MQ=255)
                                                                                                                           tGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCACCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCaaa                            >  2:4574007/1‑150 (MQ=255)
                                                                                                                           tGAAACATGATTAACATAATTTGTAGGAATTGATATTAATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTTATCACCGTCGAAAAATGCaaa                            >  1:2452733/1‑150 (MQ=255)
                                                                                                                            gAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAAt                           >  1:1813419/1‑150 (MQ=255)
                                                                                                                             aaaCATGATTAACATAATTTGTAGAAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAAtt                          >  1:3884797/1‑150 (MQ=255)
                                                                                                                               aCATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTg                        >  2:2670866/1‑150 (MQ=255)
                                                                                                                               aCATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTg                        <  2:11658/150‑1 (MQ=255)
                                                                                                                                 aTGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCt                      <  1:4573796/150‑1 (MQ=255)
                                                                                                                                 aTGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCt                      <  2:4271643/150‑1 (MQ=255)
                                                                                                                                   taTTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTc                    >  2:3310701/2‑150 (MQ=255)
                                                                                                                                   gATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTc                    <  1:1904064/150‑1 (MQ=255)
                                                                                                                                   gATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTc                    <  2:192843/150‑1 (MQ=255)
                                                                                                                                    aTTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATAACCGTCGAAAAATGCAAATTTGCTTca                   >  1:177789/1‑150 (MQ=255)
                                                                                                                                     ttAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTcaa                  >  2:3708453/1‑150 (MQ=255)
                                                                                                                                       aaCATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTcaaca                <  2:845443/150‑1 (MQ=255)
                                                                                                                                       aaCATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTcaaca                <  1:3470415/150‑1 (MQ=255)
                                                                                                                                          aTAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACaaaa             >  2:3461066/1‑150 (MQ=255)
                                                                                                                                           tAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACaaaaa            >  1:3526109/1‑150 (MQ=255)
                                                                                                                                            aaTTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACAAAAAc           >  1:4062485/1‑150 (MQ=255)
                                                                                                                                             aTTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACAAAAAcc          >  2:1954410/1‑150 (MQ=255)
                                                                                                                                              tttGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACAAAAACCt         <  2:3947885/150‑1 (MQ=255)
                                                                                                                                                tGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACAAAAACCTGt       <  1:1183433/150‑1 (MQ=255)
                                                                                                                                                 gTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACAAAAACCTGtt      >  2:1331719/1‑150 (MQ=255)
                                                                                                                                                  tAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACAAAAACCTGttt     >  1:2707143/1‑150 (MQ=255)
                                                                                                                                                     gAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACAAAAACCTGTTTAtt  <  2:3046429/150‑1 (MQ=255)
                                                                                                                                                     gAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACAAAAACCTGTTTAtt  >  1:5075587/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
AAGAATTAAGGTCAACCGTGCTGTTTTTGCTTCGTCTCTTTTTATCTTTAATTGCCAACCGAAACTAATTTCAGCCTTATAACTCACACATTTTAAACATAAATGTCACTAAAGTTACCTTATTGAAACATGATTAACATAATTTGTAGGAATTGATATTTATCAATGTATAAGTCTTGGAAATGGGCATCAAAAAGAGATAAATTGTTCTCGATCAAATTGGCTGAAAGGCGGTAATTTAGCTATAAATTGATCACCGTCGAAAAATGCAAATTTGCTTCAACAAAAACCTGTTTATT  >  CP009273/766414‑766712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A