Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F54 I0 R1 640 319.5 10493376 95.3% 10000187 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,604,068 G→T 21.8% T290T (ACC→ACA)  uxaB ← altronate oxidoreductase, NAD‑dependent

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,604,0680GT21.8% 836.8 / 193.7 332T290T (ACC→ACA) uxaBaltronate oxidoreductase, NAD‑dependent
Reads supporting (aligned to +/- strand):  ref base G (131/128);  new base T (34/39);  total (165/167)
Fisher's exact test for biased strand distribution p-value = 5.97e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 344 total aligned reads displayed.

GCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTCCCTGAATCACAAACAGGTAAAAGTGTTCAG  >  CP009273/1603919‑1604216
                                                                                                                                                     |                                                                                                                                                    
 cGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCgg                                                                                                                                                     >  1:1889559/1‑150 (MQ=255)
 cGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCgg                                                                                                                                                     >  1:4702413/1‑150 (MQ=255)
 cGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCgg                                                                                                                                                     >  2:3680336/1‑150 (MQ=255)
  gAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGgt                                                                                                                                                    <  1:4180302/150‑1 (MQ=255)
     aGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACTAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGTCACCAGCGCGGtgtg                                                                                                                                                 >  2:1941371/1‑150 (MQ=255)
          ccAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCAc                                                                                                                                            >  1:1358455/1‑150 (MQ=255)
            aGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCg                                                                                                                                          >  1:4520697/1‑150 (MQ=255)
            aGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCg                                                                                                                                          >  2:4341857/1‑150 (MQ=255)
               tcatcaCGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTg                                                                                                                                       >  1:2801602/1‑150 (MQ=255)
                 atcaCGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAg                                                                                                                                     <  2:1131701/150‑1 (MQ=255)
                     cGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGAtt                                                                                                                                 <  2:3285192/150‑1 (MQ=255)
                      gAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTg                                                                                                                                >  1:3989457/1‑150 (MQ=255)
                      gAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTg                                                                                                                                <  2:3326097/150‑1 (MQ=255)
                      gAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTg                                                                                                                                >  1:1434965/1‑150 (MQ=255)
                        ggCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACAGTTGAGGATTGcc                                                                                                                              >  2:1208417/1‑150 (MQ=255)
                         gCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCa                                                                                                                             <  2:3865840/150‑1 (MQ=255)
                         gCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCa                                                                                                                             <  1:816367/150‑1 (MQ=255)
                          cAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCCGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCAc                                                                                                                            >  1:3020885/1‑150 (MQ=255)
                             aTCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACttt                                                                                                                         >  2:550394/1‑150 (MQ=255)
                                cAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCg                                                                                                                      >  2:170735/1‑150 (MQ=255)
                                 aGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGt                                                                                                                     >  2:421195/1‑150 (MQ=255)
                                 aGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGt                                                                                                                     >  1:3386813/1‑150 (MQ=255)
                                 aGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCAGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGt                                                                                                                     >  2:749569/1‑150 (MQ=255)
                                  gTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGtt                                                                                                                    <  1:1552748/150‑1 (MQ=255)
                                  gTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGtt                                                                                                                    <  1:2622085/150‑1 (MQ=255)
                                   tACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTc                                                                                                                   >  2:1083714/1‑150 (MQ=255)
                                    aCCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCt                                                                                                                  <  2:4443616/150‑1 (MQ=255)
                                    aCCGGAATAATTTCTTCGGAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTNt                                                                                                                  <  1:3800921/150‑1 (MQ=255)
                                      cGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCttt                                                                                                                <  2:684538/150‑1 (MQ=255)
                                      cGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCttt                                                                                                                >  1:2704898/1‑150 (MQ=255)
                                       ggAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTg                                                                                                               >  1:1305221/1‑150 (MQ=255)
                                        gAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGt                                                                                                              >  2:3456969/1‑150 (MQ=255)
                                        gAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGt                                                                                                              <  2:396291/150‑1 (MQ=255)
                                            aatTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACgg                                                                                                          >  1:454052/1‑150 (MQ=255)
                                             atTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGt                                                                                                         <  1:2531948/150‑1 (MQ=255)
                                                tcttcGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTa                                                                                                      <  2:4855187/150‑1 (MQ=255)
                                                 cttcGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTaa                                                                                                     >  2:5203419/1‑150 (MQ=255)
                                                   tcGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAata                                                                                                   <  1:3542805/150‑1 (MQ=255)
                                                    cGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAatat                                                                                                  >  1:1593496/1‑150 (MQ=255)
                                                      tAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCg                                                                                                >  1:5009179/1‑150 (MQ=255)
                                                      tAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCg                                                                                                <  2:3114239/150‑1 (MQ=255)
                                                      gaGATTGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGTTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCg                                                                                                <  1:3220151/149‑1 (MQ=255)
                                                       aGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGt                                                                                               >  1:3709993/1‑150 (MQ=255)
                                                        gATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTc                                                                                              >  1:4226301/1‑150 (MQ=255)
                                                         aTAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTca                                                                                             <  1:421036/150‑1 (MQ=255)
                                                           aGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTcaac                                                                                           <  2:1301728/150‑1 (MQ=255)
                                                           aGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTcaac                                                                                           <  1:1604469/150‑1 (MQ=255)
                                                            gCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTcaaca                                                                                          <  1:5156776/150‑1 (MQ=255)
                                                              attttCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAAt                                                                                        <  1:1058043/149‑1 (MQ=255)
                                                               ttttCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATc                                                                                       >  1:1549778/1‑150 (MQ=255)
                                                                tttCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCa                                                                                      >  1:4858652/1‑150 (MQ=255)
                                                                    aaCGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCAc                                                                                  >  1:2974651/1‑150 (MQ=255)
                                                                        aaTGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTg                                                                              <  1:5224600/150‑1 (MQ=255)
                                                                         aTGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGa                                                                             >  1:513031/1‑150 (MQ=255)
                                                                            cgcAAAGTTCAGCATCGTTCATCGCTTCACCTACTGTATCCTGACCTTCCTGGAACGGCACGGGCACCAGCGCGGTGTGCGCACCGTTGTGGATTGGCACTTTGCGTTGTTTGTACGGTTTAATATCGTCAACAATCAGCTCGTTGAGCg                                                                          <  2:3091778/150‑1 (MQ=255)
                                                                              cAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGa                                                                        >  1:1493798/1‑150 (MQ=255)
                                                                                aaTTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGata                                                                      >  1:362130/1‑150 (MQ=255)
                                                                                  tttCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATAtt                                                                    <  1:3456969/150‑1 (MQ=255)
                                                                                  tttCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATCTCGTCAACAATCAGCACGTTGAGCGGATAtt                                                                    >  2:3912638/1‑150 (MQ=255)
                                                                                   ttCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATAttt                                                                   <  2:2431775/150‑1 (MQ=255)
                                                                                   ttCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACCATCAGCACGTTGAGCGGATAttt                                                                   >  2:4785105/1‑150 (MQ=255)
                                                                                    tCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTg                                                                  <  2:4624026/150‑1 (MQ=255)
                                                                                      aGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTc                                                                <  2:2301824/150‑1 (MQ=255)
                                                                                         aTCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAg                                                             <  1:2481581/150‑1 (MQ=255)
                                                                                         aTCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAg                                                             <  1:1947442/150‑1 (MQ=255)
                                                                                         aTCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAg                                                             >  2:1594442/1‑150 (MQ=255)
                                                                                          tCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGa                                                            <  1:1663767/150‑1 (MQ=255)
                                                                                           cGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGAc                                                           >  1:3276789/1‑150 (MQ=255)
                                                                                               cATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAg                                                       <  1:2969309/150‑1 (MQ=255)
                                                                                                aTCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGt                                                      <  1:3345093/150‑1 (MQ=255)
                                                                                                aTCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGt                                                      >  1:3927217/1‑150 (MQ=255)
                                                                                                aTCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGt                                                      <  1:1105827/150‑1 (MQ=255)
                                                                                                  cGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTc                                                    <  2:2533898/150‑1 (MQ=255)
                                                                                                   gCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCa                                                   >  1:1336024/1‑150 (MQ=255)
                                                                                                   gCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCa                                                   >  1:748276/1‑150 (MQ=255)
                                                                                                   gCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCa                                                   >  1:922430/1‑150 (MQ=255)
                                                                                                    cTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAg                                                  <  2:1082443/150‑1 (MQ=255)
                                                                                                     ttCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGAGATTTGTCCAGACGCAGTTCAGt                                                 >  2:3531220/1‑150 (MQ=255)
                                                                                                       cACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCg                                               >  2:2661220/1‑150 (MQ=255)
                                                                                                          cTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTa                                            >  1:4432120/1‑150 (MQ=255)
                                                                                                                   ccAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCg                                   <  2:1411655/150‑1 (MQ=255)
                                                                                                                      gCCCTGCCTGGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTc                                <  1:655062/150‑1 (MQ=255)
                                                                                                                         ctgcctgGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTCCCt                             <  2:2549031/150‑1 (MQ=255)
                                                                                                                         ctgcctgGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTCCCt                             <  2:4923745/150‑1 (MQ=255)
                                                                                                                         ctgcctgGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTCCCt                             <  2:4591250/150‑1 (MQ=255)
                                                                                                                         ctgcctgGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTCCCt                             <  1:4954854/150‑1 (MQ=255)
                                                                                                                           gcctgGAACGCCACCGGCACCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTCCCTGa                           <  2:1545661/150‑1 (MQ=255)
                                                                                                                             ctgGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTCCCTGAAt                         <  1:170735/150‑1 (MQ=255)
                                                                                                                               ggAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTCCCTGAATca                       >  2:383267/1‑150 (MQ=255)
                                                                                                                                gAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTCCCTGAATcac                      >  2:1881807/1‑150 (MQ=255)
                                                                                                                                    gCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTCCCTGAATCACAAAc                  <  1:2201302/150‑1 (MQ=255)
                                                                                                                                      cACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTCCCTGAATCACAAACAg                <  2:470180/150‑1 (MQ=255)
                                                                                                                                          ggCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTCCCTGAATCACAAACAGGTaa            >  2:3758386/1‑150 (MQ=255)
                                                                                                                                           gCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTCCCTGAATCACAAACAGGTaaa           >  1:118687/1‑150 (MQ=255)
                                                                                                                                           gCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTCCCTGAATCACAAACAGGTaaa           >  2:3008593/1‑150 (MQ=255)
                                                                                                                                             aCCAGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTCCCTGAATCACAAACAGGTAAAAg         >  2:2279267/1‑150 (MQ=255)
                                                                                                                                               cAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTCCCTGAATCACAAACAGGTAAAAgtg       <  2:4955158/150‑1 (MQ=255)
                                                                                                                                                aGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTCCCTGAATCACAAACAGGTAAAAgtgt      <  1:3991646/150‑1 (MQ=255)
                                                                                                                                                aGCGCTGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTCCCTGAATCACAAACAGGTAAAAgtgt      <  2:4520697/150‑1 (MQ=255)
                                                                                                                                                    cgGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTACTATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTCCCTGAATCACAAACAGGTAAAAGTGTTCAg  <  1:4513689/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
GCGAAAGATTCCAGTTCATCACGAGGCAAATCCAGTACCGGAATAATTTCTTCGTAGATAGCTTTTTCAACGAATGCGCAAATTTCAGCATCGTTCATCGCTTCACCTACGGTATCCAGCCCTGCCTGGAACGCCACCGGCACCAGCGCGGTGTGCGCACCGTTGAGGATTGCCACTTTGCGTTCTTTGTACGGTTTAATATCGTCAACAATCAGCACGTTGAGCGGATATTTGTCCAGACGCAGTTCAGTCGCTAAGGATTTCGGTCCCTGAATCACAAACAGGTAAAAGTGTTCAG  >  CP009273/1603919‑1604216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A