Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F181 I0 R1
|
1262 |
323.1 |
10297870 |
97.5% |
10040423 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
1,284,124 |
C→A |
5.6% |
intergenic (‑44/+6) |
purU ← / ← ychJ |
formyltetrahydrofolate hydrolase/UPF0225 family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 1,284,124 | 0 | C | A | 5.6%
| 1158.9
/ 28.4
| 291 | intergenic (‑44/+6) | purU/ychJ | formyltetrahydrofolate hydrolase/UPF0225 family protein |
| Reads supporting (aligned to +/- strand): ref base C (137/137); new base A (9/8); total (146/145) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 301 total aligned reads displayed.
GTACGATATTTAACTCGTGCTTGTAGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAACGTTCAATTATTGCACCTGT > CP009273/1283975‑1284273
|
tACGATATTTAACTCGTGCTTGTAGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCa < 2:1345969/150‑1 (MQ=255)
aCGATATTTAACTCGTGCTTGTAGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCaa < 1:4418807/150‑1 (MQ=255)
atatTTAACTCGTGCTTGTAGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAAccc > 2:2700072/1‑149 (MQ=255)
tatTTAACTCGTGCTTGTAGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCat < 1:858541/150‑1 (MQ=255)
tatTTAACTCGTGCTTGTAGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCat < 1:4104136/150‑1 (MQ=255)
atTTAACTCGTGCTTGTAGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCatt > 1:129265/1‑150 (MQ=255)
atTTAACTCGTGCTTGTAGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCatt < 2:4670297/150‑1 (MQ=255)
atTTAACTCGTGCTTGTAGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCatt < 2:4670228/150‑1 (MQ=255)
tttAACTCGTGCTTGTAGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCatta < 2:324210/150‑1 (MQ=255)
tttAACTCGTGCTTGTAGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCatta < 1:2070167/150‑1 (MQ=255)
aaCTCGTGCTTGTAGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTg > 2:1313067/1‑150 (MQ=255)
aaCTCGTGCTTGTAGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTg > 1:3546791/1‑150 (MQ=255)
cTCGTGCTTGTAGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGc < 2:487288/150‑1 (MQ=255)
cGTGCTTGTAGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCg < 2:3890903/150‑1 (MQ=255)
gTGCTTGTAGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCgc > 1:330895/1‑150 (MQ=255)
cTTGTAGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCgcagc < 2:564627/150‑1 (MQ=255)
ttGTAGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTAAACCATTATTGGCCgcagca < 2:4992838/150‑1 (MQ=255)
gTAGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACt < 2:442245/150‑1 (MQ=255)
aGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACttt < 1:585394/150‑1 (MQ=255)
aGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACttt > 1:4567090/1‑150 (MQ=255)
gCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACtttt < 1:4820479/150‑1 (MQ=255)
cAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACttttt < 2:2117760/150‑1 (MQ=255)
aaaTATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTa < 2:3226494/150‑1 (MQ=255)
aaaTATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTa > 1:4305670/1‑150 (MQ=255)
aaaTATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTa > 1:4305641/1‑150 (MQ=255)
atatTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTAAACCATTATTGGCCGCAGCACTTTTTaaa > 2:3479544/1‑150 (MQ=255)
atTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAAtt < 2:5074756/150‑1 (MQ=255)
ggTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAAttttt < 2:2916589/150‑1 (MQ=255)
gTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAAtttttt > 2:4736187/1‑150 (MQ=255)
aaTACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTAc > 1:3800310/1‑150 (MQ=255)
aTACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTAcc < 2:3630363/150‑1 (MQ=255)
aTACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTAAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTAcc < 1:5120321/150‑1 (MQ=255)
cGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGa > 2:3772987/1‑150 (MQ=255)
gTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGaa > 2:2510036/1‑150 (MQ=255)
gTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGaa > 1:4666918/1‑150 (MQ=255)
gTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGaa > 1:2112760/1‑150 (MQ=255)
tGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAAc > 1:4738082/1‑150 (MQ=255)
gCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAAcc < 1:3344172/150‑1 (MQ=255)
cGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACca > 2:1567683/1‑150 (MQ=255)
cGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACca < 2:1022671/150‑1 (MQ=255)
gATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACcac > 2:4562104/1‑150 (MQ=255)
gACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAggg < 1:3128178/150‑1 (MQ=255)
aCCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGc < 2:1202787/150‑1 (MQ=255)
ttttGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAggg > 1:3103423/1‑150 (MQ=255)
ttttGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAggg < 1:1805475/150‑1 (MQ=255)
ttGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTTAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGAt > 2:424415/1‑150 (MQ=255)
ggTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCg < 1:1369143/150‑1 (MQ=255)
tCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGtt > 2:3956081/1‑150 (MQ=255)
gACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGa > 1:3023462/1‑150 (MQ=255)
aaaTAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCa < 1:1975994/150‑1 (MQ=255)
aaaTAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCa > 1:2867786/1‑150 (MQ=255)
aTAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCaaa < 2:2820960/150‑1 (MQ=255)
aGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACt > 2:1823004/1‑150 (MQ=255)
aGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACt < 2:1473928/150‑1 (MQ=255)
aGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACt < 1:4498159/150‑1 (MQ=255)
cGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCgg < 2:3394671/150‑1 (MQ=255)
gCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGa < 2:2040701/150‑1 (MQ=255)
gCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGa < 1:2673016/150‑1 (MQ=255)
aGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACg > 1:2537208/1‑150 (MQ=255)
cTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTa > 2:2478982/1‑150 (MQ=255)
cGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTc > 1:140150/1‑150 (MQ=255)
gTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCa > 1:4332307/1‑150 (MQ=255)
gTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCa < 1:4843100/150‑1 (MQ=255)
ttGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCaa < 2:3581729/150‑1 (MQ=255)
ggAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAata < 2:3439908/150‑1 (MQ=255)
aGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAAtata < 1:1571364/150‑1 (MQ=255)
aGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTAAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAAtata < 1:486340/150‑1 (MQ=255)
gTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAg < 1:1957621/150‑1 (MQ=255)
gTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAg > 2:1706041/1‑150 (MQ=255)
tGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGt < 1:1373421/150‑1 (MQ=255)
tGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGt < 1:3937102/150‑1 (MQ=255)
aTGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTAcc < 2:4120079/150‑1 (MQ=255)
tGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGt < 1:3719518/150‑1 (MQ=255)
gAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGttt > 1:3452041/1‑150 (MQ=255)
ccTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTCTTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTtttctttc < 2:4325993/150‑1 (MQ=255)
gttgAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCaaaa < 1:2434380/150‑1 (MQ=255)
tgAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAAt > 1:2062252/1‑150 (MQ=255)
tgAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAAt < 2:4192882/150‑1 (MQ=255)
agTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATcgcg < 1:4995056/150‑1 (MQ=255)
gtgtTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGa < 1:2048374/150‑1 (MQ=255)
tgtTTGCTAAACCGTATCGTAAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGaa < 1:2176502/150‑1 (MQ=255)
gtTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAAc < 1:399289/150‑1 (MQ=255)
gtTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAAc > 2:4454049/1‑150 (MQ=255)
ttGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAACGt > 2:2247828/1‑150 (MQ=255)
tGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAACGtt < 2:2334102/150‑1 (MQ=255)
tGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAACGtt > 1:903320/1‑150 (MQ=255)
gCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAACGTTc < 1:4604444/150‑1 (MQ=255)
tAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAACGTTCaa > 2:1655231/1‑150 (MQ=255)
tAAACCGTACCGTAAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAACGTTCaa > 2:2864467/1‑150 (MQ=255)
accgtaccgtCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAACGTTCAatta > 2:1241211/1‑150 (MQ=255)
accgtaccgtCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAACGTTCAatta < 1:2395761/150‑1 (MQ=255)
cgtaccgtCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAACGTTCAattatt > 1:2811571/1‑150 (MQ=255)
cgtaccgtCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAACGTTCAattatt > 2:2545053/1‑150 (MQ=255)
accgtCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAACGTTCAATTATTGCa < 1:350853/150‑1 (MQ=255)
cgtCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAACGTTCAATTATTGCAcc > 2:1054308/1‑150 (MQ=255)
gtCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAACGTTCAATTATTGCACCt > 1:1087387/1‑150 (MQ=255)
gtCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAACGTTCAATTATTGCACCt > 2:2017920/1‑150 (MQ=255)
gtCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAACGTTCAATTATTGCACCt < 1:260175/150‑1 (MQ=255)
tCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAACGTTCAATTATTGCACCTg > 1:3872103/1‑150 (MQ=255)
cAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAACGTTCAATTATTGCACCTGt > 1:3112963/1‑150 (MQ=255)
|
GTACGATATTTAACTCGTGCTTGTAGCAAATATTGGTAATACGTGCGATCAGACCTTTTTGGTCCGGACAAATAGTACGCAGAACTTTACGTTGGAGTGAATGCATTGCTGGAAAAACCTTGTTGAGAGTGTTTGCTAAACCGTACCGTCAACCATTATTGGCCGCAGCACTTTTTAAATTTTTTACCTGAACCACAAGGGCAGGGATCGTTGCGACCAAACTGCGGACGTGTACCGTCAATATAGTACCATTGACCGTTTTCTTTCAAAAATCGCGAACGTTCAATTATTGCACCTGT > CP009273/1283975‑1284273
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
