Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F181 I0 R1 1262 323.1 10297870 97.5% 10040423 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 4,259,065 C→A 6.5% intergenic (‑125/‑277) yjbS ← / → aphA uncharacterized protein/acid phosphatase/phosphotransferase, class B, non‑specific

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092734,259,0650CA 6.5% 976.7 / 29.9 255intergenic (‑125/‑277)yjbS/aphAuncharacterized protein/acid phosphatase/phosphotransferase, class B, non‑specific
Reads supporting (aligned to +/- strand):  ref base C (103/135);  new base A (7/10);  total (110/145)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01

Only 100 of 266 total aligned reads displayed.

TGCTATTCACATATGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCAT  >  CP009273/4258916‑4259214
                                                                                                                                                     |                                                                                                                                                     
tgCTATTCACATATGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATc                                                                                                                                                       <  2:127454/150‑1 (MQ=255)
    aTTCACATATGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTAc                                                                                                                                                   >  2:1863351/1‑150 (MQ=255)
     ttCACATATGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTAca                                                                                                                                                  <  1:1905373/150‑1 (MQ=255)
         caTATGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTAcagcag                                                                                                                                              <  2:4739358/150‑1 (MQ=255)
          atatGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGa                                                                                                                                             <  1:5015675/150‑1 (MQ=255)
            atGATATGTTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATa                                                                                                                                           >  1:2018107/1‑150 (MQ=255)
            atGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATa                                                                                                                                           <  2:3605974/150‑1 (MQ=255)
            atGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATa                                                                                                                                           >  1:1380466/1‑150 (MQ=255)
             tGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATaa                                                                                                                                          <  1:4392120/150‑1 (MQ=255)
             tGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATaa                                                                                                                                          <  1:3048129/150‑1 (MQ=255)
               atatatTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAAt                                                                                                                                        >  1:452094/1‑150 (MQ=255)
                 atatTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGt                                                                                                                                      <  2:2516649/150‑1 (MQ=255)
                 atatTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGt                                                                                                                                      >  1:4680713/1‑150 (MQ=255)
                     tCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTa                                                                                                                                  <  2:4639677/150‑1 (MQ=255)
                     tCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTa                                                                                                                                  >  1:515201/1‑150 (MQ=255)
                       atatCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGTCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATc                                                                                                                                <  1:280261/150‑1 (MQ=255)
                         atcatcatcTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCaa                                                                                                                              >  1:3688314/1‑150 (MQ=255)
                            atcatcTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAAtt                                                                                                                           >  2:3555920/1‑150 (MQ=255)
                                tctcCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGc                                                                                                                       >  1:5127007/1‑150 (MQ=255)
                                tctcCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGc                                                                                                                       <  1:3655265/150‑1 (MQ=255)
                                     aTCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCAtt                                                                                                                  <  2:4191562/150‑1 (MQ=255)
                                       cgcgAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTg                                                                                                                >  1:1262755/1‑150 (MQ=255)
                                       cgcgAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTg                                                                                                                >  1:3096599/1‑150 (MQ=255)
                                       cgcgAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTg                                                                                                                <  1:3506050/150‑1 (MQ=255)
                                       cgcgAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTg                                                                                                                >  2:5010674/1‑150 (MQ=255)
                                          gAGTAATAAAATTTATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCg                                                                                                             <  2:304267/150‑1 (MQ=255)
                                          gAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCg                                                                                                             <  2:4024668/150‑1 (MQ=255)
                                           aGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGa                                                                                                            >  2:2074357/1‑150 (MQ=255)
                                            gTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAg                                                                                                           >  1:455631/1‑150 (MQ=255)
                                               ataaAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGAt                                                                                                        <  2:1587970/150‑1 (MQ=255)
                                               ataaAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGAt                                                                                                        <  2:2760716/150‑1 (MQ=255)
                                                taaAATTAATCACCATTGTAGGGTTGGGTGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATTAATGTTCTATCAAATTTCGCTCATTTGCCGAGGAtt                                                                                                       <  1:2640718/150‑1 (MQ=255)
                                                taaAATTAATCACCATGGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGAtt                                                                                                       <  2:3904622/150‑1 (MQ=255)
                                                  aaaTTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATtca                                                                                                     <  2:2462684/150‑1 (MQ=255)
                                                    aTTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATtcatc                                                                                                   >  1:2248476/1‑150 (MQ=255)
                                                     ttAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATtcatca                                                                                                  <  1:4949542/150‑1 (MQ=255)
                                                      tAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTcatcat                                                                                                 <  2:3473684/150‑1 (MQ=255)
                                                       aaTCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCata                                                                                                <  2:1712365/150‑1 (MQ=255)
                                                       aaTCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCata                                                                                                <  1:2614725/150‑1 (MQ=255)
                                                        aTCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCataa                                                                                               >  1:4078773/1‑150 (MQ=255)
                                                        aTCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCataa                                                                                               >  1:4341568/1‑150 (MQ=255)
                                                        aTCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCataa                                                                                               >  1:1785289/1‑150 (MQ=255)
                                                          cACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCataata                                                                                             <  2:4234996/150‑1 (MQ=255)
                                                             cATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAAc                                                                                          <  1:2145492/150‑1 (MQ=255)
                                                              aTTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACg                                                                                         <  1:2483048/150‑1 (MQ=255)
                                                              aTTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACg                                                                                         <  2:2946571/150‑1 (MQ=255)
                                                               ttGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGt                                                                                        <  1:3765462/150‑1 (MQ=255)
                                                                  tagggtagggGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTACATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACCTaaa                                                                                     >  2:2246151/1‑150 (MQ=255)
                                                                   agggtagggGGCTGGTCAATCATAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTaaaa                                                                                    >  2:182354/1‑150 (MQ=255)
                                                                    gggtagggGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAAt                                                                                   >  2:3286432/1‑150 (MQ=255)
                                                                       tagggGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTaa                                                                                >  1:323954/1‑150 (MQ=255)
                                                                        agggGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAAt                                                                               >  1:509366/1‑150 (MQ=255)
                                                                         gggggCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATg                                                                              <  2:5134236/150‑1 (MQ=255)
                                                                         gggggCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATg                                                                              >  1:4704888/1‑150 (MQ=255)
                                                                           gggCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTa                                                                            <  2:3165244/150‑1 (MQ=255)
                                                                                ggTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCtt                                                                       <  2:1495585/150‑1 (MQ=255)
                                                                                  tCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTAc                                                                     <  1:1205835/150‑1 (MQ=255)
                                                                                    aaTCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACAt                                                                   <  1:1858798/150‑1 (MQ=255)
                                                                                     aTCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATc                                                                  <  1:3900977/150‑1 (MQ=255)
                                                                                     aTCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATc                                                                  >  2:4280597/1‑150 (MQ=255)
                                                                                        aGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTGAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAg                                                               <  1:1800662/150‑1 (MQ=255)
                                                                                        aGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAg                                                               <  2:1195826/150‑1 (MQ=255)
                                                                                          aaaTCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGta                                                             <  2:3591595/150‑1 (MQ=255)
                                                                                          aaaTCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGta                                                             >  1:2971991/1‑150 (MQ=255)
                                                                                             tcatcTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGtaata                                                          >  1:4311434/1‑150 (MQ=255)
                                                                                             tcatcTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGtaata                                                          >  2:706605/1‑150 (MQ=255)
                                                                                              catcTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGtaataa                                                         <  2:4831327/150‑1 (MQ=255)
                                                                                               atcTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATaaa                                                        >  2:1158091/1‑150 (MQ=255)
                                                                                                  tttATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCTTACAGCAGATAAATGTTCTATCAAATTTCGCTCAATTGCCGAGGATTCATCATTATAAACTTAAATTTAATGTATCCTTAAATCGAGTAATAAACAt                                                     <  2:1606437/150‑1 (MQ=255)
                                                                                                  tttATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACAt                                                     <  1:2709910/150‑1 (MQ=255)
                                                                                                    tataAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACAttt                                                   >  2:4441556/1‑150 (MQ=255)
                                                                                                     ataAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACAtttt                                                  <  1:990933/150‑1 (MQ=255)
                                                                                                     ataAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACAtttt                                                  <  1:2422901/150‑1 (MQ=255)
                                                                                                       aaaCTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACAtttttt                                                >  2:655671/1‑150 (MQ=255)
                                                                                                        aaCTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTta                                               <  1:1167641/150‑1 (MQ=255)
                                                                                                         aCTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTtat                                              <  1:1660914/150‑1 (MQ=255)
                                                                                                                  gTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACaaaaaaa                                     >  1:785424/1‑150 (MQ=255)
                                                                                                                       tGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAg                                <  1:1368693/150‑1 (MQ=255)
                                                                                                                                gTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTAtt                       <  2:2155594/150‑1 (MQ=255)
                                                                                                                                    cATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACt                   <  1:2074357/150‑1 (MQ=255)
                                                                                                                                      ttAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTgg                 <  2:4151528/150‑1 (MQ=255)
                                                                                                                                       tAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTggg                >  2:897238/1‑150 (MQ=255)
                                                                                                                                        aaGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGt               >  1:1406167/1‑150 (MQ=255)
                                                                                                                                         aGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGtt              >  1:230387/1‑150 (MQ=255)
                                                                                                                                           ttCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTaa            <  1:1882195/150‑1 (MQ=255)
                                                                                                                                            tCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTaaa           <  1:3975516/150‑1 (MQ=255)
                                                                                                                                             cATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAat          >  2:4515387/1‑150 (MQ=255)
                                                                                                                                             cATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAat          <  2:4566046/150‑1 (MQ=255)
                                                                                                                                             cATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAat          >  1:4119440/1‑150 (MQ=255)
                                                                                                                                             cATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAat          <  2:5080128/150‑1 (MQ=255)
                                                                                                                                               ttAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAatat        >  2:1911440/1‑150 (MQ=255)
                                                                                                                                               ttAAATAGTTCAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAatat        >  2:1968262/1‑150 (MQ=255)
                                                                                                                                                tAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAAtata       >  2:4787215/1‑150 (MQ=255)
                                                                                                                                                tAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAAtata       >  1:1013270/1‑150 (MQ=255)
                                                                                                                                                  aaTCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAat     <  2:1205885/150‑1 (MQ=255)
                                                                                                                                                   aTCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAatc    <  2:4659602/150‑1 (MQ=255)
                                                                                                                                                   aTCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAatc    <  2:4779487/150‑1 (MQ=255)
                                                                                                                                                   aTCGTACAGCAGATAAATGTTCTATCAAATTTCGCTAATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAatc    <  1:8288/150‑1 (MQ=255)
                                                                                                                                                     cGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAatcat  >  1:3979319/1‑150 (MQ=255)
                                                                                                                                                     cGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAatcat  >  1:2854240/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TGCTATTCACATATGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCAT  >  CP009273/4258916‑4259214

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A