Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F218 I0 R1 1506 278.7 9275112 94.5% 8764980 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 4,259,065 C→A 25.3% intergenic (‑125/‑277) yjbS ← / → aphA uncharacterized protein/acid phosphatase/phosphotransferase, class B, non‑specific

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092734,259,0650CA25.3% 598.3 / 162.7 256intergenic (‑125/‑277)yjbS/aphAuncharacterized protein/acid phosphatase/phosphotransferase, class B, non‑specific
Reads supporting (aligned to +/- strand):  ref base C (80/111);  new base A (25/40);  total (105/151)
Fisher's exact test for biased strand distribution p-value = 6.64e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01

Only 100 of 260 total aligned reads displayed.

TGCTATTCACATATGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCAT  >  CP009273/4258916‑4259214
                                                                                                                                                     |                                                                                                                                                     
tgCTATTCACATATGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATc                                                                                                                                                       >  2:167302/1‑150 (MQ=255)
  cTATTCACATATGATATCTTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGt                                                                                                                                                     >  2:1748437/1‑150 (MQ=255)
   tATTCACATATGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTa                                                                                                                                                    <  1:4343247/150‑1 (MQ=255)
   tATTCACATATGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTa                                                                                                                                                    >  2:1512870/1‑150 (MQ=255)
    aTTCACATATGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTAc                                                                                                                                                   >  2:1260156/1‑150 (MQ=255)
     ttCACATATGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTAca                                                                                                                                                  >  1:1040895/1‑150 (MQ=255)
        acaTATGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTAcagca                                                                                                                                               <  2:1854634/150‑1 (MQ=255)
         caTATGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTAcagcag                                                                                                                                              >  2:4029691/1‑150 (MQ=255)
         caTATGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGGAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTAcagcag                                                                                                                                              >  2:4545660/1‑150 (MQ=255)
           tatGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGAt                                                                                                                                            <  1:2806788/150‑1 (MQ=255)
            atGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATa                                                                                                                                           <  2:3728576/150‑1 (MQ=255)
              gATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATaaa                                                                                                                                         >  2:2026411/1‑150 (MQ=255)
                 atatTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGt                                                                                                                                      >  1:142570/1‑150 (MQ=255)
                 atatTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGt                                                                                                                                      >  1:1042257/1‑150 (MQ=255)
                  tatTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGtt                                                                                                                                     <  1:591513/150‑1 (MQ=255)
                   atTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTc                                                                                                                                    <  1:485544/150‑1 (MQ=255)
                    ttCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCt                                                                                                                                   <  2:4187179/150‑1 (MQ=255)
                     tCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTa                                                                                                                                  >  2:1906480/1‑150 (MQ=255)
                     tCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTa                                                                                                                                  <  1:411609/150‑1 (MQ=255)
                          tcatcatcTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCaaa                                                                                                                             >  1:342430/1‑150 (MQ=255)
                              catcTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTc                                                                                                                         <  1:1605841/150‑1 (MQ=255)
                               atcTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCg                                                                                                                        <  2:697506/150‑1 (MQ=255)
                                  tcCATCGCGAGTAATAAAATTAAACACCAATGTAGGTTAGGGGGCTGGTAAATAAGAAATCATCATTAAAAACATCGATTGTTTTTGTAATGCTGTATCATTAAGTTAATAAAAACAAACAGAAGATAAATATTCTATCAAAtttatcac                                                                                                                     >  1:4256817/1‑145 (MQ=255)
                                    cATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCAt                                                                                                                   >  1:3325905/1‑150 (MQ=255)
                                    cATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCAt                                                                                                                   <  2:269594/150‑1 (MQ=255)
                                       cgcgAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTg                                                                                                                >  1:3055349/1‑150 (MQ=255)
                                        gcgAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGc                                                                                                               <  2:3207638/150‑1 (MQ=255)
                                         cgAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGcc                                                                                                              <  1:1757507/150‑1 (MQ=255)
                                         cgAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGcc                                                                                                              <  2:1604364/150‑1 (MQ=255)
                                         cgAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGcc                                                                                                              <  1:2811615/150‑1 (MQ=255)
                                         cgAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGcc                                                                                                              <  2:4435849/150‑1 (MQ=255)
                                                    aTTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATtcatc                                                                                                   <  1:3104420/150‑1 (MQ=255)
                                                    aTTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATtcatc                                                                                                   <  2:2948413/150‑1 (MQ=255)
                                                      tAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTcatcat                                                                                                 <  2:1439901/150‑1 (MQ=255)
                                                      tAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTcatcat                                                                                                 <  2:1574491/150‑1 (MQ=255)
                                                      tAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTcatcat                                                                                                 <  2:521601/150‑1 (MQ=255)
                                                       aaTCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCata                                                                                                <  2:2784328/150‑1 (MQ=255)
                                                              aTTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACg                                                                                         <  1:2718382/150‑1 (MQ=255)
                                                                   agggtagggGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTaaaa                                                                                    >  2:1178183/1‑150 (MQ=255)
                                                                       tagggGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTaa                                                                                >  1:1141332/1‑150 (MQ=255)
                                                                         gggggCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTTCAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATg                                                                              <  1:2472988/150‑1 (MQ=255)
                                                                         gggggCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATg                                                                              >  2:443456/1‑150 (MQ=255)
                                                                          ggggCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGt                                                                             >  2:4234306/1‑150 (MQ=255)
                                                                              cTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATcc                                                                         <  2:3884990/150‑1 (MQ=255)
                                                                                ggTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCtt                                                                       <  1:1915728/150‑1 (MQ=255)
                                                                                ggTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCtt                                                                       >  2:3788825/1‑150 (MQ=255)
                                                                                ggTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTAATCATAATAAACGTAAAATTAATGTATCCtt                                                                       >  2:2076321/1‑150 (MQ=255)
                                                                                   cAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACa                                                                    >  1:1885479/1‑150 (MQ=255)
                                                                                   cAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACa                                                                    <  1:492177/150‑1 (MQ=255)
                                                                                   cAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACa                                                                    >  1:4070300/1‑150 (MQ=255)
                                                                                    aaTCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACAt                                                                   <  1:4586273/150‑1 (MQ=255)
                                                                                     aTCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATc                                                                  >  1:986459/1‑150 (MQ=255)
                                                                                      tCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCg                                                                 >  2:2491430/1‑150 (MQ=255)
                                                                                       cAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGa                                                                <  2:1142651/150‑1 (MQ=255)
                                                                                       cAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGa                                                                <  1:3856956/150‑1 (MQ=255)
                                                                                        aGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAg                                                               >  2:300415/1‑150 (MQ=255)
                                                                                        aGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAg                                                               <  1:1807336/150‑1 (MQ=255)
                                                                                         gAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGt                                                              >  1:3583218/1‑150 (MQ=255)
                                                                                         gAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGt                                                              <  1:3656424/150‑1 (MQ=255)
                                                                                          aaaTCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGta                                                             <  1:4533444/150‑1 (MQ=255)
                                                                                            atcatcTTTATAAACTTCGATTGTTTTTGTAATTCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGtaat                                                           <  2:2709754/150‑1 (MQ=255)
                                                                                            atcatcTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGtaat                                                           <  2:4080902/150‑1 (MQ=255)
                                                                                            atcatcTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGtaat                                                           <  1:2350165/150‑1 (MQ=255)
                                                                                            atcatcTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGtaat                                                           <  1:2564577/150‑1 (MQ=255)
                                                                                            atcatcTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGtaat                                                           <  1:2350202/150‑1 (MQ=255)
                                                                                             tcatcTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGtaata                                                          <  2:21964/150‑1 (MQ=255)
                                                                                             tcatcTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGtaata                                                          <  1:4426895/150‑1 (MQ=255)
                                                                                              catcTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGtaataa                                                         >  1:2839152/1‑150 (MQ=255)
                                                                                               atcTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATaaa                                                        >  1:3175888/1‑150 (MQ=255)
                                                                                                tcTTTATAAACTTCGATTGTTTTTGTAATGCTTTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAAc                                                       <  1:1745899/150‑1 (MQ=255)
                                                                                                    tataAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACAttt                                                   <  1:1163593/150‑1 (MQ=255)
                                                                                                      taAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACAttttt                                                 <  1:3001183/150‑1 (MQ=255)
                                                                                                      taAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACAttttt                                                 <  1:3046259/150‑1 (MQ=255)
                                                                                                         aCTTCGATTGTTTTTGTAACGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTtat                                              <  2:3710639/150‑1 (MQ=255)
                                                                                                           ttCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATAc                                            <  2:3490313/150‑1 (MQ=255)
                                                                                                            tCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACa                                           <  1:4171123/150‑1 (MQ=255)
                                                                                                            tCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACa                                           <  2:447405/150‑1 (MQ=255)
                                                                                                               aTTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACaaaa                                        >  2:850699/1‑150 (MQ=255)
                                                                                                               aTTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACaaaa                                        >  2:3307173/1‑150 (MQ=255)
                                                                                                                   tttttGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAg                                    <  2:2375337/150‑1 (MQ=255)
                                                                                                                       tGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAg                                <  2:2956067/150‑1 (MQ=255)
                                                                                                                        gTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAgg                               <  1:3350636/150‑1 (MQ=255)
                                                                                                                        gTAATGCTGTATCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAgg                               >  2:3924775/1‑150 (MQ=255)
                                                                                                                         tAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGa                              <  2:2557882/150‑1 (MQ=255)
                                                                                                                          aaTGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGaa                             <  1:2669063/150‑1 (MQ=255)
                                                                                                                          aaTGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGaa                             >  2:3488053/1‑150 (MQ=255)
                                                                                                                           aTGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAAc                            <  2:3158210/150‑1 (MQ=255)
                                                                                                                               tGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTAt                        <  2:4281173/150‑1 (MQ=255)
                                                                                                                                  aTCATTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTa                     <  1:3524219/150‑1 (MQ=255)
                                                                                                                                   tCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTAc                    >  1:2030270/1‑150 (MQ=255)
                                                                                                                                    cATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACt                   <  1:958845/150‑1 (MQ=255)
                                                                                                                                     aTTAAGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTg                  <  1:3800807/150‑1 (MQ=255)
                                                                                                                                       tAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTggg                <  1:2156408/150‑1 (MQ=255)
                                                                                                                                        aaGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGt               <  2:3465939/150‑1 (MQ=255)
                                                                                                                                        aaGTTCATTAAATAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACGGGAACGTATTTACTGGGt               <  1:4347691/150‑1 (MQ=255)
                                                                                                                                            tCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTaaa           <  1:1205808/150‑1 (MQ=255)
                                                                                                                                               ttAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAatat        >  1:1678129/1‑150 (MQ=255)
                                                                                                                                                  aaTCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAat     <  1:4201479/150‑1 (MQ=255)
                                                                                                                                                  aaTAGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAat     <  2:4624067/150‑1 (MQ=255)
                                                                                                                                                   aTCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAatc    <  2:1788282/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TGCTATTCACATATGATATATTCATATCATCATCTCCATCGCGAGTAATAAAATTAATCACCATTGTAGGGTAGGGGGCTGGTCAATCAGAAATCATCTTTATAAACTTCGATTGTTTTTGTAATGCTGTATCATTAAGTTCATTAAATCGTACAGCAGATAAATGTTCTATCAAATTTCGCTCATTTGCCGAGGATTCATCATAATAAACGTAAAATTAATGTATCCTTACATCGAGTAATAAACATTTTTTATACAAAAAAAGACAGGAACGTATTTACTGGGTTAAATATAATCAT  >  CP009273/4258916‑4259214

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A