Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F78 I0 R1 626 241.3 10389380 77.7% 8072548 149.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 321,223 C→A 37.9% intergenic (‑148/+65) ykgH ← / ← betA putative inner membrane protein/choline dehydrogenase, a flavoprotein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273321,2230CA37.9% 214.0 / 197.2 176intergenic (‑148/+65)ykgH/betAputative inner membrane protein/choline dehydrogenase, a flavoprotein
Reads supporting (aligned to +/- strand):  ref base C (61/48);  new base A (26/41);  total (87/89)
Fisher's exact test for biased strand distribution p-value = 3.05e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 181 total aligned reads displayed.

ATAATATATCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCGGCAGCGCTTCCTGTCCACGAATCATA  >  CP009273/321074‑321372
                                                                                                                                                      |                                                                                                                                                     
ataataTATCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTc                                                                                                                                                       <  1:3594264/150‑1 (MQ=255)
ataataTATCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTc                                                                                                                                                       >  2:5151435/1‑150 (MQ=255)
    tatatCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTc                                                                                                                                                   <  2:171445/150‑1 (MQ=255)
    tatatCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTc                                                                                                                                                   <  2:2786423/150‑1 (MQ=255)
     atatCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTcc                                                                                                                                                  >  1:4148370/1‑150 (MQ=255)
       atCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTcccc                                                                                                                                                <  1:21838/150‑1 (MQ=255)
       atCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTcccc                                                                                                                                                <  2:2229548/150‑1 (MQ=255)
       atCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATAATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTcccc                                                                                                                                                <  2:5076437/150‑1 (MQ=255)
         ccAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGGATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCct                                                                                                                                              <  2:3128602/150‑1 (MQ=255)
         ccAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCct                                                                                                                                              <  2:2766086/150‑1 (MQ=255)
          cAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCctc                                                                                                                                             <  1:4925486/150‑1 (MQ=255)
           agagAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCctc                                                                                                                                             <  1:4925488/150‑1 (MQ=255)
            gagaATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCctctc                                                                                                                                           <  1:3517364/150‑1 (MQ=255)
             agaATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCctctct                                                                                                                                          >  1:229691/1‑150 (MQ=255)
             agaATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCctctct                                                                                                                                          <  1:3817010/150‑1 (MQ=255)
               aaTAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTgg                                                                                                                                        >  2:3103017/1‑150 (MQ=255)
                aTAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGa                                                                                                                                       <  1:3883071/150‑1 (MQ=255)
                  aaaaTCTGTCGCAGATAAGGTTTTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAAc                                                                                                                                     <  2:4843899/150‑1 (MQ=255)
                     aTCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGt                                                                                                                                  >  1:3854413/1‑150 (MQ=255)
                      tCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTa                                                                                                                                 >  1:186426/1‑150 (MQ=255)
                       cTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTaa                                                                                                                                <  2:4159655/150‑1 (MQ=255)
                         gTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAAct                                                                                                                              <  2:1187742/150‑1 (MQ=255)
                         gTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAAct                                                                                                                              >  2:2091324/1‑150 (MQ=255)
                              aGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCaa                                                                                                                         <  2:3230773/150‑1 (MQ=255)
                                aTAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATc                                                                                                                       <  2:4583470/150‑1 (MQ=255)
                                aTAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATc                                                                                                                       <  1:3657263/150‑1 (MQ=255)
                                 tAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCt                                                                                                                      >  2:75498/1‑150 (MQ=255)
                                 tAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCt                                                                                                                      >  1:555364/1‑150 (MQ=255)
                                  aaGGTTGTATTAATAGACTGTATCAGGAATGTTCTGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATTAGAGTTACCTCAGAGTTTATATAAGGATTAGGTCCCCCACTCTGGAACTGTAACTCTCAATCTg                                                                                                                     >  1:3838276/1‑150 (MQ=255)
                                     gTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATc                                                                                                                  <  1:5134615/150‑1 (MQ=255)
                                     gTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATc                                                                                                                  <  1:1580054/150‑1 (MQ=255)
                                       tGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCgg                                                                                                                <  2:2752525/150‑1 (MQ=255)
                                        gTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGt                                                                                                               >  2:4887071/1‑150 (MQ=255)
                                         tATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGtt                                                                                                              <  2:1996144/150‑1 (MQ=255)
                                           ttAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTcc                                                                                                            >  1:5052938/1‑150 (MQ=255)
                                            tAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCt                                                                                                           <  1:4177311/150‑1 (MQ=255)
                                                     gTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGtt                                                                                                  >  2:1355018/1‑150 (MQ=255)
                                                     gTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGtt                                                                                                  >  1:1948663/1‑150 (MQ=255)
                                                       aTCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTca                                                                                                <  1:324645/150‑1 (MQ=255)
                                                        tCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTcac                                                                                               >  1:4244157/1‑150 (MQ=255)
                                                             aaTGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCAc                                                                                          >  2:3906443/1‑150 (MQ=255)
                                                             aaTGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCAc                                                                                          >  1:4538144/1‑150 (MQ=255)
                                                              aTGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACg                                                                                         <  2:3010869/150‑1 (MQ=255)
                                                                gTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGAc                                                                                       >  1:4359325/1‑150 (MQ=255)
                                                                   cGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCa                                                                                    <  2:601630/150‑1 (MQ=255)
                                                                    gggTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCAt                                                                                   >  1:888385/1‑150 (MQ=255)
                                                                    gggTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGAGATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCAt                                                                                   >  2:2944480/1‑150 (MQ=255)
                                                                     ggTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCAtt                                                                                  >  2:3054975/1‑150 (MQ=255)
                                                                     ggTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTGAGTTCACATCACGACTCAtt                                                                                  >  2:3480311/1‑150 (MQ=255)
                                                                      gTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCAttt                                                                                 <  2:3783836/150‑1 (MQ=255)
                                                                       ttAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCAtttt                                                                                <  1:3094812/150‑1 (MQ=255)
                                                                        tAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCAttttt                                                                               <  1:3124630/150‑1 (MQ=255)
                                                                             atcatc‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGct                                                                          <  2:172028/150‑1 (MQ=255)
                                                                             atCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGct                                                                          >  1:958307/1‑150 (MQ=255)
                                                                             atCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGct                                                                          >  1:350947/1‑150 (MQ=255)
                                                                                 gC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCa                                                                      <  2:4300955/150‑1 (MQ=255)
                                                                                  c‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCAc                                                                     >  2:365309/1‑150 (MQ=255)
                                                                                    aaaaaGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCAcc                                                                    >  1:4111925/1‑150 (MQ=255)
                                                                                     aaaaGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCg                                                                   >  1:3157517/1‑150 (MQ=255)
                                                                                         gCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCAt                                                               >  2:4171800/1‑150 (MQ=255)
                                                                                             gCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCa                                                           >  1:623159/1‑150 (MQ=255)
                                                                                                tcatGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCAttt                                                        <  1:5151435/150‑1 (MQ=255)
                                                                                                    gAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCca                                                    >  1:1705052/1‑150 (MQ=255)
                                                                                                     aaTACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCcac                                                   >  2:2117069/1‑150 (MQ=255)
                                                                                                        aCTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACaaa                                                >  1:2875558/1‑150 (MQ=255)
                                                                                                        aCTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACaaa                                                >  1:2875863/1‑150 (MQ=255)
                                                                                                          tGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAat                                              <  2:1039626/150‑1 (MQ=255)
                                                                                                          tGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAat                                              <  2:3695181/150‑1 (MQ=255)
                                                                                                            gATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAatat                                            <  1:5005634/150‑1 (MQ=255)
                                                                                                             atatGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATc                                           >  2:3486227/1‑150 (MQ=255)
                                                                                                              tatGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATcc                                          >  1:4584716/1‑150 (MQ=255)
                                                                                                              tatGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATcc                                          >  1:4591274/1‑150 (MQ=255)
                                                                                                                 gAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCccgc                                       <  1:1782455/150‑1 (MQ=255)
                                                                                                                   aGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCccgccg                                     <  2:2584113/150‑1 (MQ=255)
                                                                                                                   aGCATGAGAGTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCccgccg                                     <  2:491725/150‑1 (MQ=255)
                                                                                                                     cATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTg                                   <  1:2306718/150‑1 (MQ=255)
                                                                                                                      aTGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGc                                  >  2:2329813/1‑150 (MQ=255)
                                                                                                                           agTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGctcctc                             >  1:1282471/1‑150 (MQ=255)
                                                                                                                           agTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGctcctc                             >  1:1279039/1‑150 (MQ=255)
                                                                                                                            gtaaCCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCg                            >  2:2222411/4‑150 (MQ=255)
                                                                                                                            gTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCg                            <  2:41689/150‑1 (MQ=255)
                                                                                                                            gTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTTGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCg                            <  1:3739894/150‑1 (MQ=255)
                                                                                                                            gTTACCTCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCg                            <  1:2036590/150‑1 (MQ=255)
                                                                                                                                  tCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCGGCAgcg                      >  2:105243/1‑150 (MQ=255)
                                                                                                                                  tCAGTGTTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCGGCAgcg                      >  1:3249499/1‑150 (MQ=255)
                                                                                                                                     gtgtTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCGGCAGCGCtt                   <  2:1132178/150‑1 (MQ=255)
                                                                                                                                       gtTTATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCGGCAGCGCTTcc                 >  2:913844/1‑150 (MQ=255)
                                                                                                                                        tttATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCGGCAGCGCTTCCt                <  1:303019/150‑1 (MQ=255)
                                                                                                                                        tttATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCGGCAGCGCTTCCt                <  1:303088/150‑1 (MQ=255)
                                                                                                                                        tttATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCGGCAGCGCTTCCt                <  2:4469486/150‑1 (MQ=255)
                                                                                                                                        tttATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCGGCAGCGCTTCCt                <  2:4469534/150‑1 (MQ=255)
                                                                                                                                        tttATATAAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCGGCAGCGCTTCCt                <  2:4414930/150‑1 (MQ=255)
                                                                                                                                           atataAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCGGCAGCGCTTCCTGTc             >  1:3147499/1‑150 (MQ=255)
                                                                                                                                           atataAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCGGCAGCGCTTCCTGTc             <  1:2421395/150‑1 (MQ=255)
                                                                                                                                            tataAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCGGCAGCGCTTCCTGTcc            <  1:4012261/150‑1 (MQ=255)
                                                                                                                                             ataAGGATTAGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCGGCAGCGCTTCCTGTCCa           >  1:1874752/1‑150 (MQ=255)
                                                                                                                                              taAGGATTCGGTCCCCCTCTCTGGATCGGTAACTCTCAATCTGATCGGGTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCGGCAGCGCTTCCTGTCCAc          <  2:3053315/150‑1 (MQ=255)
                                                                                                                                              taAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCGGCAGCGCTTCCTGTCCAc          <  2:1814703/150‑1 (MQ=255)
                                                                                                                                                  gATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCGGCAGCGCGTCCTGTCCACGAAt      <  2:2427225/150‑1 (MQ=255)
                                                                                                                                                      cGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCGGCAGCGCTTCCTGTCCACGAATCata  >  1:3303339/1‑150 (MQ=255)
                                                                                                                                                      |                                                                                                                                                     
ATAATATATCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC‑AAAAAGCCCGCATCATGAATACTGGATATGAAGCATGAGAGTTACCTCAGTGTTTATATAAGGATTCGGTCCCCCTCTCTGGAACGGTAACTCTCAATCTGATCGGTTCCTGCGTTAGTTCACATCACGACTCATTTTTTCGCTCTCACCGGCATCCCATTTGCCACAAAATATCCCGCCGTGCTCCTCGGCAGCGCTTCCTGTCCACGAATCATA  >  CP009273/321074‑321372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A