Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F52 I0 R1
|
779 |
320.1 |
10410758 |
96.6% |
10056792 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
157,178 |
C→A |
20.8% |
intergenic (‑87/+91) |
dksA ← / ← sfsA |
transcriptional regulator of rRNA transcription, DnaK suppressor protein/sugar fermentation stimulation protein A |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 157,178 | 0 | C | A | 20.8%
| 803.7
/ 174.6
| 292 | intergenic (‑87/+91) | dksA/sfsA | transcriptional regulator of rRNA transcription, DnaK suppressor protein/sugar fermentation stimulation protein A |
| Reads supporting (aligned to +/- strand): ref base C (105/126); new base A (31/30); total (136/156) |
| Fisher's exact test for biased strand distribution p-value = 4.74e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01 |
Only 100 of 294 total aligned reads displayed.
TCCACCCCAGCGATGGCGAGAATACTCAGGGACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGC > CP009273/157030‑157325
|
cACCCCAGCGATGGCGAGAATACTCAGGGACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCaa < 2:4668209/149‑1 (MQ=255)
aCCCCAGCGATGGCGAGAATACTCAGGGACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAAt > 1:3383325/1‑149 (MQ=255)
ccccAGCGATGGCGAGAATACTCAGGGACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAAtt < 2:2253155/149‑1 (MQ=255)
ccAGCGATGGCGAGAATACTCAGGGACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTAt < 1:5166740/149‑1 (MQ=255)
cAGCGATGGCGAGAATACTCAGGGACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATc > 1:3619346/1‑149 (MQ=255)
gCGATGGCGAGAATACTCAGGGACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTa < 2:2959229/149‑1 (MQ=255)
aTGGCGAGAATACTCAGGGACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAAc > 2:3688615/1‑149 (MQ=255)
aTGGCGAGAATACTCAGGGACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAAc < 1:815616/149‑1 (MQ=255)
tGGCGAGAATACTCAGGGACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACg > 2:2100424/1‑149 (MQ=255)
cGAGAATACTCAGGGACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTaa > 2:4605250/1‑149 (MQ=255)
agaATACTCAGGGACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAaca > 1:1075453/1‑149 (MQ=255)
aaTACTCAGGGACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGAAATTATCTAAACGTAACACt < 1:2184058/149‑1 (MQ=255)
aTACTCATGGTCGATGTTTTTCGGTTTTGCCCTTCTTGCATGGTGCTTCTCCTTAACCCGCACTATCGCTCCCCCTGTTCGGGGGAAAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACt < 1:4885162/149‑1 (MQ=255)
aTACTCAGGGACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACtt < 2:3567751/149‑1 (MQ=255)
aTACTCAGGGACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACtt < 1:1271106/149‑1 (MQ=255)
cTCAGGGACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGAAATTATCTAAACGTAACACTTGAc < 2:4187113/149‑1 (MQ=255)
aGGGACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAAc < 1:4490403/149‑1 (MQ=255)
gggACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGAAATTATCTAAACGTAACACTTGACAACt > 1:568557/1‑149 (MQ=255)
gggACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGAAATTATCTAAACGTAACACTTGACAACt > 2:1777436/1‑149 (MQ=255)
gACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGAAATTATCTAAACGTAACACTTGACAACtgt < 1:2357345/149‑1 (MQ=255)
cGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGAAATTATCTAAACGTAACACTTGACAACtgtgt < 2:1467265/149‑1 (MQ=255)
aTGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGa > 2:4120068/1‑149 (MQ=255)
tGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAg > 2:621977/1‑149 (MQ=255)
tGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAg < 1:2617779/149‑1 (MQ=255)
tGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGAAATTATCTAAACGTAACACTTGACAACTGTGTGAg < 1:3897906/149‑1 (MQ=255)
gTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAgg < 1:1655349/149‑1 (MQ=255)
tttACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGaa > 1:2125414/1‑149 (MQ=255)
cGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGc < 1:1163888/149‑1 (MQ=255)
ttttGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTa < 1:1399999/149‑1 (MQ=255)
tttGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTAt < 2:533376/149‑1 (MQ=255)
ttGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTAtt < 1:4266727/149‑1 (MQ=255)
tGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGAAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTAttt < 1:3695818/149‑1 (MQ=255)
cccTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTgc > 1:3554957/1‑149 (MQ=255)
cttGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCAcg > 1:4082833/1‑149 (MQ=255)
cttGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCAcg > 2:3369315/1‑149 (MQ=255)
ttGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCAcgc < 2:5165894/149‑1 (MQ=255)
cATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGAc < 1:503653/149‑1 (MQ=255)
aTGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGAcc > 1:1356098/1‑149 (MQ=255)
tGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCa < 1:3519208/149‑1 (MQ=255)
ttGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGAAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGa < 1:2456732/149‑1 (MQ=255)
tGCTACTCATTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGaa < 1:4378730/149‑1 (MQ=255)
gCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAAt < 2:3104988/149‑1 (MQ=255)
gCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAAt > 1:2910750/1‑149 (MQ=255)
ttCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGt < 2:2076359/149‑1 (MQ=255)
ttCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGAAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGt < 2:1942586/149‑1 (MQ=255)
tctcCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTa < 1:343977/149‑1 (MQ=255)
tctcCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTa > 2:2418375/1‑149 (MQ=255)
tctcCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTa > 2:4422999/1‑149 (MQ=255)
ctcCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTaa > 1:5132505/1‑149 (MQ=255)
ccTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAAt < 2:2545445/149‑1 (MQ=255)
ttAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTa > 1:1509152/1‑149 (MQ=255)
tAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTaa < 1:1054102/149‑1 (MQ=255)
acacGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGAAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAAcc < 1:3890694/149‑1 (MQ=255)
cacGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCa < 1:4872396/149‑1 (MQ=255)
cacGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCa < 1:3740589/149‑1 (MQ=255)
acGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAg < 1:4816597/149‑1 (MQ=255)
cACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGtta < 1:634128/149‑1 (MQ=255)
cACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGtta > 1:2424804/1‑149 (MQ=255)
cTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGttact < 1:1707120/149‑1 (MQ=255)
tATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGttactt < 2:3991320/149‑1 (MQ=255)
aTCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGttactta > 2:2856920/1‑149 (MQ=255)
aTCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGttactta > 1:1804027/1‑149 (MQ=255)
tCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGttacttac < 1:2639623/149‑1 (MQ=255)
gATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATACATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTacttactt < 2:2833546/149‑1 (MQ=255)
gATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGAAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTacttactt > 2:5028891/1‑149 (MQ=255)
aTCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGAAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACttacttt > 1:3982394/1‑149 (MQ=255)
ccccATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACttactttac > 2:1605294/1‑149 (MQ=255)
cATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGAAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTtactac < 1:2705720/149‑1 (MQ=255)
tGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACaa < 1:2877951/149‑1 (MQ=255)
tGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACaa > 2:2127184/1‑149 (MQ=255)
gTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTTACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAAt < 2:1668676/149‑1 (MQ=255)
gTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGAAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAAt < 2:2118010/149‑1 (MQ=255)
ttCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATg > 2:4733462/1‑149 (MQ=255)
tCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGt < 2:3748696/149‑1 (MQ=255)
ggggg‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTaa < 2:1406265/149‑1 (MQ=255)
gggg‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGAAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAAc > 2:2655882/1‑149 (MQ=255)
aaaaTGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCa > 1:3790477/1‑149 (MQ=255)
tGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGa < 2:2592933/149‑1 (MQ=255)
gAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGAt > 1:684447/1‑149 (MQ=255)
gAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGAt > 1:3238205/1‑149 (MQ=255)
aGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGAtt < 2:1188044/149‑1 (MQ=255)
gCCGCTATAAATAGCAGATTCTTTTCCGGATAGAAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGATCACGCGACCAGAATGTAAATTAACCAGTTACTAACTTTACTACAATGTAAACGGCACAGAtttt > 1:2828072/1‑149 (MQ=255)
gCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGAtttt > 2:752522/1‑149 (MQ=255)
ccGCTATAAAGAGAAGATGATGTTCCGGATAGAAATTATCTAATCGTATATCTTGACAACTGTGTGAGGAAAATCGTATTTGCGCACGCGAACAGTATGTATATTAACCAGTTACTTACTTTACTAAAATGTAACCGGCAGTGAttttt < 1:3751244/149‑1 (MQ=255)
aaTAGCAGATGCTTTTCCGGATAGAAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGcc < 1:3839969/149‑1 (MQ=255)
aTAGCAGATGCGTGTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCa < 2:4501242/149‑1 (MQ=255)
aGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATg > 2:2002153/1‑149 (MQ=255)
aGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCt > 2:1332718/1‑149 (MQ=255)
gATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCtt < 1:1972256/149‑1 (MQ=255)
tGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTca < 2:3388010/149‑1 (MQ=255)
tGCTTTTCCGGATAGAAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTca < 1:774112/149‑1 (MQ=255)
gCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTcag > 2:14982/1‑149 (MQ=255)
ttttCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTcagca > 2:2193017/1‑149 (MQ=255)
cGGATAGCAATTATCTAAACGTAACACTTGACATCTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAAt < 1:4539338/149‑1 (MQ=255)
ggATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAAtt > 1:4409480/1‑149 (MQ=255)
ggATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAAtt < 2:3802862/149‑1 (MQ=255)
ggATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATATAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTATGAGCCATGCCTTCAGCAGAAAtt > 2:277492/1‑149 (MQ=255)
aTAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTc < 2:1774046/149‑1 (MQ=255)
aTAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTc < 2:3488338/149‑1 (MQ=255)
aTAGAAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTc > 1:4960165/1‑149 (MQ=255)
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TCCACCCCAGCGATGGCGAGAATACTCAGGGACGATGTTTTACGGTTTTGCCCTTCTTGCATGTTGCTTCTCCTTAACACGCACTATCGATCCCCATGTTCGGGGG‑AAAAATGAGGCCGCTATAAATAGCAGATGCTTTTCCGGATAGCAATTATCTAAACGTAACACTTGACAACTGTGTGAGGAAAAGCGTATTTGCGCACGCGACCAGAATGTAAATTAACCAGTTACTTACTTTACTACAATGTAACCGGCAGTGATTTTTTAAGAGCCATGCCTTCAGCAGAAATTTCCGC > CP009273/157030‑157325
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
