Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F309 I0 R1 1697 197.2 6627756 95.7% 6342762 147.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,836,230 G→T 21.4% A307E (GCG→GAG)  yicO ← putative adenine permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,836,2300GT21.4% 534.1 / 99.0 206A307E (GCG→GAG) yicOputative adenine permease
Reads supporting (aligned to +/- strand):  ref base G (61/101);  new base T (19/25);  total (80/126)
Fisher's exact test for biased strand distribution p-value = 6.01e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.45e-01

Only 100 of 208 total aligned reads displayed.

GGAGGAACTATCGCCACCAGCGGTGAGAAGAACATAACCAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAGGTTGATCAGCATAAAGGAGAAA  >  CP009273/3836083‑3836376
                                                                                                                                                   |                                                                                                                                                  
ggaggaACTATCGCCACCAGCGGTGAGAAGAACATAACCAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACg                                                                                                                                                    >  2:2878791/1‑148 (MQ=255)
 gaggaACTATCGCCACCAGCGGTGAGAAGAACATAACCAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGc                                                                                                                                                   <  1:1920058/148‑1 (MQ=255)
 gaggaACTATCGCCACCAGCGGTGAGAAGAACATAACCAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGc                                                                                                                                                   <  1:2457727/148‑1 (MQ=255)
     aaCTATCGCCACCAGCGGTGAGAAGAACATAACCAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCAccc                                                                                                                                               >  1:1729689/1‑148 (MQ=255)
       cTATCGCCACCAGCGGTGAGAAGAACATAACCAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGc                                                                                                                                             >  2:1616708/1‑148 (MQ=255)
       cTATCGCCACCAGCGGTGAGAAGAACATAACCAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGc                                                                                                                                             >  2:491520/1‑148 (MQ=255)
             acacctGCGGTGAGAAGATCATTACCAAGAGGAACATTTCGCAAACGACATGCGGTGTCAGCCCGGTGGGTACACCGTCTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGTTAAACTGTCCCGACACCGa                                                                                                                                       <  2:3304480/147‑1 (MQ=255)
              caccaGCGGTGAGAAGAACATAACCAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGaa                                                                                                                                      <  2:2593477/148‑1 (MQ=255)
              caccaGCGGTGAGAAGAACATAACCAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGaa                                                                                                                                      <  2:612336/148‑1 (MQ=255)
                      gTGAGAAGAACATAACCAACAGGAACATAACGACAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCt                                                                                                                              <  1:58891/148‑1 (MQ=255)
                         agaagaACATAACCAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATc                                                                                                                           >  2:278297/1‑148 (MQ=255)
                             gaaCATAACCAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACa                                                                                                                       >  1:124478/1‑148 (MQ=255)
                             gaaCATAACCAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACa                                                                                                                       <  1:1175945/148‑1 (MQ=255)
                               aCATAACCAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATa                                                                                                                     >  2:1324725/1‑148 (MQ=255)
                               aCATAACCAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATa                                                                                                                     <  2:2456491/148‑1 (MQ=255)
                                cATAACCAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATAc                                                                                                                    <  1:2034887/148‑1 (MQ=255)
                                cATAACCAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTACCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATAc                                                                                                                    <  1:1157730/148‑1 (MQ=255)
                                 aTAACCAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACa                                                                                                                   <  2:756547/148‑1 (MQ=255)
                                    aCCAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAgcg                                                                                                                <  1:3119823/148‑1 (MQ=255)
                                     ccAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAgcgc                                                                                                               >  1:2261442/1‑148 (MQ=255)
                                      cAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGcc                                                                                                              <  2:1141268/148‑1 (MQ=255)
                                        aCAGGAACATAACGCCAACCACAACCTCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCtt                                                                                                            <  1:1804283/148‑1 (MQ=255)
                                        aCAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCtt                                                                                                            >  1:360295/1‑148 (MQ=255)
                                            gAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACTCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTc                                                                                                        <  1:2279066/148‑1 (MQ=255)
                                             aaCATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCa                                                                                                       >  1:1435857/1‑148 (MQ=255)
                                              aCATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACTCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCat                                                                                                      <  1:450314/148‑1 (MQ=255)
                                               cATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCata                                                                                                     <  2:2343893/148‑1 (MQ=255)
                                                  aaCGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACTCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCt                                                                                                             <  1:1069166/137‑1 (MQ=255)
                                                  aaCGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACTCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCt                                                                                                             >  2:1069166/1‑137 (MQ=255)
                                                  aaCGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACTCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTg                                                                                                  >  1:14324/1‑148 (MQ=255)
                                                  aaCGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACTCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTg                                                                                                  <  1:165694/148‑1 (MQ=255)
                                                  aaCGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTg                                                                                                  <  1:2359151/148‑1 (MQ=255)
                                                  aaCGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTg                                                                                                  >  1:602418/1‑148 (MQ=255)
                                                    cGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTggg                                                                                                >  2:187780/1‑148 (MQ=255)
                                                    cGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTggg                                                                                                <  1:2984548/148‑1 (MQ=255)
                                                      ccAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGa                                                                                              <  1:1547498/148‑1 (MQ=255)
                                                       cAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACTCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGaa                                                                                             <  2:1438919/148‑1 (MQ=255)
                                                        aaCCACACCCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTGCAATATAGGCAGTAACAGACGAGGTGCCGATAAACTCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAAt                                                                                            <  2:2680081/148‑1 (MQ=255)
                                                        aaCCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACTCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAAt                                                                                            >  1:1748663/1‑148 (MQ=255)
                                                          ccACACCCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAAttt                                                                                          <  2:2453772/148‑1 (MQ=255)
                                                           cacaACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTa                                                                                         <  2:30724/148‑1 (MQ=255)
                                                              aaCCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACTCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCg                                                                                      <  2:666018/148‑1 (MQ=255)
                                                              aaCCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACTCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCg                                                                                      <  2:829647/148‑1 (MQ=255)
                                                              aaCCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCg                                                                                      <  2:1750135/148‑1 (MQ=255)
                                                               aCCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGt                                                                                     <  1:631518/148‑1 (MQ=255)
                                                                       cAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCt                                                                             <  1:5074/148‑1 (MQ=255)
                                                                        aGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTa                                                                            >  1:26706/1‑148 (MQ=255)
                                                                          ccccGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACTCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTAtt                                                                          >  1:3099956/1‑148 (MQ=255)
                                                                          ccccGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTAtt                                                                          >  1:2466122/1‑148 (MQ=255)
                                                                             cGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAg                                                                       <  1:1323317/148‑1 (MQ=255)
                                                                             cGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAg                                                                       >  2:1353549/1‑148 (MQ=255)
                                                                                 cGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCg                                                                   >  1:329821/1‑148 (MQ=255)
                                                                                      aCCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTa                                                              <  2:2166265/148‑1 (MQ=255)
                                                                                      aCCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTa                                                              <  2:248737/148‑1 (MQ=255)
                                                                                       ccGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTAt                                                             >  1:32622/1‑148 (MQ=255)
                                                                                        cGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATc                                                            <  1:178320/148‑1 (MQ=255)
                                                                                        cGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATc                                                            <  1:659186/148‑1 (MQ=255)
                                                                                           cTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGt                                                         <  2:602654/148‑1 (MQ=255)
                                                                                           cTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGt                                                         >  1:2415868/1‑148 (MQ=255)
                                                                                            tGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGtt                                                        >  1:2025555/1‑148 (MQ=255)
                                                                                             gCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTa                                                       >  1:287602/1‑148 (MQ=255)
                                                                                             gCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTa                                                       >  1:1957959/1‑148 (MQ=255)
                                                                                              ccACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACTCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTac                                                      <  2:2892447/148‑1 (MQ=255)
                                                                                               cacaCCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTaca                                                     <  1:2976600/148‑1 (MQ=255)
                                                                                                acacCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACTCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTacac                                                    >  1:777135/1‑148 (MQ=255)
                                                                                                  acCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCa                                                  >  1:1004385/1‑148 (MQ=255)
                                                                                                    cAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAAt                                                <  2:796245/148‑1 (MQ=255)
                                                                                                    cAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAAt                                                <  1:432251/148‑1 (MQ=255)
                                                                                                    cAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAAt                                                >  2:1994626/1‑148 (MQ=255)
                                                                                                      gAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTa                                              <  1:2521902/148‑1 (MQ=255)
                                                                                                      gAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTa                                              <  1:2994267/148‑1 (MQ=255)
                                                                                                        aGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAAt                                            >  2:2714259/1‑148 (MQ=255)
                                                                                                            cTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACTCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTc                                        <  1:1210356/148‑1 (MQ=255)
                                                                                                              ttCAATATAGGCAGTAACAGACGAGGTGCCGATAAACTCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCt                                      >  1:1511835/1‑148 (MQ=255)
                                                                                                               tCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCtg                                     <  1:369380/148‑1 (MQ=255)
                                                                                                               tCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCtg                                     <  1:1240803/148‑1 (MQ=255)
                                                                                                                cAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCtga                                    >  1:2227362/1‑148 (MQ=255)
                                                                                                                     taGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAAt                               >  1:3001294/1‑148 (MQ=255)
                                                                                                                       ggCAGTAACAGACGAGGTGCCGATAAACTCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCa                             >  1:2414760/1‑148 (MQ=255)
                                                                                                                           gTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATa                         >  1:1600106/1‑148 (MQ=255)
                                                                                                                           gTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATa                         <  2:124478/148‑1 (MQ=255)
                                                                                                                             aaCAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAgg                       <  1:1324725/148‑1 (MQ=255)
                                                                                                                             aaCAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAgg                       <  1:1353549/148‑1 (MQ=255)
                                                                                                                                aGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAGGTTg                    >  1:1494840/1‑148 (MQ=255)
                                                                                                                                  aCGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAGGTTGAt                  <  2:3160036/148‑1 (MQ=255)
                                                                                                                                  aCGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAGGTTGAt                  >  2:565115/1‑148 (MQ=255)
                                                                                                                                  aCGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAGGTTGAt                  <  2:2236000/148‑1 (MQ=255)
                                                                                                                                  aCGAGGTGACGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAGGTTGAt                  <  2:1481253/148‑1 (MQ=255)
                                                                                                                                       gTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAGGTTGATCAGCa             <  2:2335482/148‑1 (MQ=255)
                                                                                                                                       gTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAGGTTGATCAGCa             <  1:491520/148‑1 (MQ=255)
                                                                                                                                          ccGATAAACTCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAGGTTGATCAGCATaa          <  1:1708010/148‑1 (MQ=255)
                                                                                                                                          ccGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAGGTTGATCAGCATaa          <  2:3284895/148‑1 (MQ=255)
                                                                                                                                           cGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAGGTTGATCAGCATaaa         <  1:1318926/148‑1 (MQ=255)
                                                                                                                                           cGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAGGTTGATCAGCATaaa         <  1:515732/148‑1 (MQ=255)
                                                                                                                                              tAAACTCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAGGTTGATCAGCATAAAGga      >  2:1222048/1‑148 (MQ=255)
                                                                                                                                               aaaCGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAGGTTGATCAGCATAAAGgag     >  2:2632044/1‑148 (MQ=255)
                                                                                                                                               aaaCGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAGGTTGATCAGCATAAAGgag     <  2:387344/148‑1 (MQ=255)
                                                                                                                                                 aCGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAGGTTGATCAGCATAAAGGAGaa   >  1:279670/1‑148 (MQ=255)
                                                                                                                                                  cGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAGGTTGATCAGCATAAAGGAGaaa  >  1:855606/1‑148 (MQ=255)
                                                                                                                                                  cGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAGGTTGATCAGCATAAAGGAGaaa  >  1:3236605/1‑148 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
GGAGGAACTATCGCCACCAGCGGTGAGAAGAACATAACCAACAGGAACATAACGCCAACCACAACCGCAGTCAGCCCCGTGCGGCCACCGACTGCCACACCAGAAGTACTTTCAATATAGGCAGTAACAGACGAGGTGCCGATAAACGCACCCGCCACCGAACTGACGCTATCAACATACAGCGCCTTATTCATATTGGGGAATTTACCGTTACCATCTATTAAGCCCGCTTTATCAGTTACACCAATTAATGTTCCTGATGAATCAAATAGGTTGATCAGCATAAAGGAGAAA  >  CP009273/3836083‑3836376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A