Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F142 I0 R1	859	274.6	8723680	96.4%	8409627	150.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP009273	1,444,739	G→A	13.5%	P290S (CCC→TCC)	tynA ←	tyramine oxidase, copper‑requiring

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	1,444,739	0	G	A	13.5%	731.6 / 83.3	245	P290S (CCC→TCC)	tynA	tyramine oxidase, copper‑requiring
Reads supporting (aligned to +/- strand): ref base G (95/116); new base A (17/16); total (112/133)
Fisher's exact test for biased strand distribution p-value = 5.74e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 251 total aligned reads displayed.

AATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACCGCGTTTCT  >  CP009273/1444590‑1444888

aaTGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATggg                                                                                                                                                       <  2:1041726/150‑1 (MQ=255)

 aTGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGa                                                                                                                                                      <  2:970603/150‑1 (MQ=255)

  tGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGAt                                                                                                                                                     >  2:442702/1‑150 (MQ=255)

    aTTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTACTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGAtgt                                                                                                                                                   <  1:675664/150‑1 (MQ=255)

    aTTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCAATCAATTGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGAtgt                                                                                                                                                   <  1:2846964/150‑1 (MQ=255)

           tAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCagt                                                                                                                                            <  2:3118164/150‑1 (MQ=255)

           tAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGAATGTGCCCagt                                                                                                                                            >  2:2556968/1‑150 (MQ=255)

           tAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGAATGTGCCCagt                                                                                                                                            >  1:3712984/1‑150 (MQ=255)

           tAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTGTCGATGGAATGTGCCCcgt                                                                                                                                            >  2:1299438/1‑150 (MQ=255)

            aGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGACTGTGCCCagta                                                                                                                                           >  2:2338698/1‑150 (MQ=255)

             ggattAACTGCCGGAGAAACGCTGACACGGCCATCAAATGGGCGTGCGGTCATTTGCACCGGAACTACCGGACCTTCTTCAATCTTAAAGATTTTTTTCTGTT‑CTAAAACAACGAACGCCACCAGGTTTTCGATGGGATGTGACCagtag                                                                                                                                          >  2:1415326/4‑150 (MQ=255)

             ggCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCagtag                                                                                                                                          <  1:699825/150‑1 (MQ=255)

                ttAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGTAACTACCGGACCTTCTAAAATCTTAACTATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTg                                                                                                                                       <  1:1959548/150‑1 (MQ=255)

                  aaCTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGcc                                                                                                                                     >  1:1884579/1‑150 (MQ=255)

                      gCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGAATGTGCCCAGTAGTTGCCATCa                                                                                                                                 <  1:1804952/150‑1 (MQ=255)

                      gCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGAATGTGCCCAGTAGTTGCCATCa                                                                                                                                 >  2:3370848/1‑150 (MQ=255)

                      gCCGGAGCAACGCGGTCACGGCCAACAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTAAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGAATGTGCCCAGTAGTTGCCATCa                                                                                                                                 <  1:3740684/150‑1 (MQ=255)

                       ccGGAGCAACGCGGTCACGGCCATCATTTGGTCGTGGGGTAATTGTCACGGTAACTACGGGTCCTTTTTCAATCTTAAGTATTTTTTTATTTT‑CTATATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCAc                                                                                                                                <  1:2493080/150‑1 (MQ=255)

                       ccGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCAc                                                                                                                                <  2:2296257/150‑1 (MQ=255)

                        cGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATGGGCACCGGAACTACCGGACCTTATTCAATCTTACCGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCAcc                                                                                                                               <  2:1814198/150‑1 (MQ=255)

                          gAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGa                                                                                                                             >  2:3905488/1‑150 (MQ=255)

                             cAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACAt                                                                                                                          <  2:1158845/150‑1 (MQ=255)

                                 gcgGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAg                                                                                                                      <  2:551446/150‑1 (MQ=255)

                                  cgGTCACGGCCATCAAATGGGCATGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGa                                                                                                                     <  2:346418/150‑1 (MQ=255)

                                   gttCACGGACATAACATGGGGGTGGTGTCTTTGGCACGTTAACTACCGTACTTTCTTAAATATTAAC‑TTTTTTTTTTGTTAATAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGAt                                                                                                                    <  1:19213/148‑1 (MQ=255)

                                       aCGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCt                                                                                                                >  1:1949033/1‑150 (MQ=255)

                                          gCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCtgat                                                                                                             >  1:1906226/1‑150 (MQ=255)

                                            cATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCtgatga                                                                                                           <  2:4310821/150‑1 (MQ=255)

                                              tCAATTGGGCGTGCGGTATTTGGCACCGGAACTACCGGACCTTCTTAAATCTTAACTATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGAATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACt                                                                                                         <  1:2595188/150‑1 (MQ=255)

                                               cAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACtt                                                                                                        >  1:4189438/1‑150 (MQ=255)

                                               cAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACtt                                                                                                        >  1:98547/1‑150 (MQ=255)

                                                aaaTGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACttt                                                                                                       <  2:276977/150‑1 (MQ=255)

                                                aaaTGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACttt                                                                                                       <  1:2431126/150‑1 (MQ=255)

                                                aaaTGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACttt                                                                                                       >  1:2749832/1‑150 (MQ=255)

                                                 aaTGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTg                                                                                                      >  1:2396020/1‑150 (MQ=255)

                                                   tGGGCGTGGGGTATTTGGCACCGTAACTACCGTACCTTCTTAATTATTAACTATTTTTTTGTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAg                                                                                                    <  1:3230658/150‑1 (MQ=255)

                                                   ggggCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATATTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAg                                                                                                    <  1:2667792/149‑1 (MQ=255)

                                                     ggCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCa                                                                                                  <  1:3105159/150‑1 (MQ=255)

                                                         tGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCg                                                                                              <  2:3019771/150‑1 (MQ=255)

                                                           cGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCggg                                                                                            >  2:1119355/1‑150 (MQ=255)

                                                               cATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATc                                                                                        >  1:4069943/1‑150 (MQ=255)

                                                                aTTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCt                                                                                       >  1:4228547/1‑150 (MQ=255)

                                                                  gggCACCGGAACTACCGGACCTTCTTCAATCTTACCTTTTTTTTTCTGTT‑ATAAATCAACGACCGCCACCAGGTTTTCGATGGAATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTg                                                                                     <  1:1479758/149‑1 (MQ=255)

                                                                     cACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCACGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCAGATGACATTGAGCAACCGGGCCTCTTGttt                                                                                  >  1:432615/1‑150 (MQ=255)

                                                                        cGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAg                                                                               <  2:3644906/150‑1 (MQ=255)

                                                                         ggAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCTgg                                                                              >  2:3710411/1‑150 (MQ=255)

                                                                             cTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCAt                                                                          <  2:3959516/150‑1 (MQ=255)

                                                                              tACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATc                                                                         <  1:1782289/150‑1 (MQ=255)

                                                                              tACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATc                                                                         >  1:3263941/1‑150 (MQ=255)

                                                                                ccGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAACCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCtt                                                                       <  1:3772702/150‑1 (MQ=255)

                                                                                 cGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCttt                                                                      <  2:4166742/150‑1 (MQ=255)

                                                                                  ggACATTCTTAAATATTAACGATTTTTTTCTTTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTa                                                                     <  1:1634764/150‑1 (MQ=255)

                                                                                    aCCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTAcc                                                                   >  1:1163723/1‑150 (MQ=255)

                                                                                    aCCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCGTGTTTCAGGCCATCTTTAcc                                                                   >  2:3201738/1‑150 (MQ=255)

                                                                                     ccTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTGTCAGGCCATCTTTACCa                                                                  >  2:4022872/1‑150 (MQ=255)

                                                                                        tcttcAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCg                                                               >  2:1390519/1‑150 (MQ=255)

                                                                                         cttcAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGa                                                              >  1:1365796/1‑150 (MQ=255)

                                                                                           tcAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGaaa                                                            <  2:2489655/150‑1 (MQ=255)

                                                                                            cAATCTTAACGATTTTTTTCTTTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAAt                                                           <  1:586219/150‑1 (MQ=255)

                                                                                            cAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCACCCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAAt                                                           >  1:1303487/1‑150 (MQ=255)

                                                                                            cAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAAt                                                           >  1:2323387/1‑150 (MQ=255)

                                                                                             aaTCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATa                                                          <  1:442702/150‑1 (MQ=255)

                                                                                             aaTCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATa                                                          >  1:425546/1‑150 (MQ=255)

                                                                                             aaTCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGAATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATa                                                          >  2:1967587/1‑150 (MQ=255)

                                                                                                cTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAAcc                                                       >  2:1880427/1‑150 (MQ=255)

                                                                                                   aaCGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTAc                                                    >  1:3099718/1‑150 (MQ=255)

                                                                                                   aaCGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTAc                                                    >  1:1015350/1‑150 (MQ=255)

                                                                                                   aaCGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGACCAGTAGTTGACATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATaaaatac                                                    >  2:3430022/1‑145 (MQ=255)

                                                                                                    aCGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACg                                                   >  1:2062124/1‑150 (MQ=255)

                                                                                                    aCGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACg                                                   >  1:511509/1‑150 (MQ=255)

                                                                                                     cGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACgg                                                  >  1:620884/1‑150 (MQ=255)

                                                                                                        tttttttCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGAATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCa                                               <  2:2933200/150‑1 (MQ=255)

                                                                                                         ttttttCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAg                                              <  2:16466/150‑1 (MQ=255)

                                                                                                           ttttCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAgcg                                            >  1:1199850/1‑150 (MQ=255)

                                                                                                             ttCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAgcggc                                          >  1:4038394/1‑150 (MQ=255)

                                                                                                             ttCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAgcggc                                          >  1:3950121/1‑150 (MQ=255)

                                                                                                               cTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGt                                        >  1:4226457/1‑150 (MQ=255)

                                                                                                               cTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGt                                        <  1:149286/150‑1 (MQ=255)

                                                                                                                 gTT‑CTAACTCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTgg                                      <  2:4183294/150‑1 (MQ=255)

                                                                                                                 gTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTgg                                      <  2:2093792/150‑1 (MQ=255)

                                                                                                                   t‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGtc                                    >  2:2847904/1‑149 (MQ=255)

                                                                                                                     cTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCACCCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTaa                                   >  1:1017959/1‑150 (MQ=255)

                                                                                                                        aaTCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCa                                <  2:2456873/150‑1 (MQ=255)

                                                                                                                           cAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACtt                             >  1:2216439/1‑150 (MQ=255)

                                                                                                                            aaCGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACttt                            <  2:859722/150‑1 (MQ=255)

                                                                                                                             aCGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACtttt                           <  2:632762/150‑1 (MQ=255)

                                                                                                                             aCGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACtttt                           <  1:388255/150‑1 (MQ=255)

                                                                                                                              cGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACttttt                          <  1:388620/150‑1 (MQ=255)

                                                                                                                               gACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACtttttt                         >  1:3499714/1‑150 (MQ=255)

                                                                                                                                    ccaccaGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCAt                    >  2:1568231/1‑150 (MQ=255)

                                                                                                                                       ccaGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAg                 >  1:2245017/1‑150 (MQ=255)

                                                                                                                                          ggTTTTCGATGGAATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTaa              <  2:874787/150‑1 (MQ=255)

                                                                                                                                          ggTTTTCGATGGAATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTaa              <  2:3684279/150‑1 (MQ=255)

                                                                                                                                           gTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAAt             <  1:3766032/150‑1 (MQ=255)

                                                                                                                                           gTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAAt             <  1:3672096/150‑1 (MQ=255)

                                                                                                                                            ttttCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATa            <  1:2187655/150‑1 (MQ=255)

                                                                                                                                              ttCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATAcc          <  2:1274805/150‑1 (MQ=255)

                                                                                                                                                cGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACcgc        >  1:3679356/1‑150 (MQ=255)

                                                                                                                                                  aTGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACCGCGt      >  1:80408/1‑150 (MQ=255)

                                                                                                                                                    gggATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCACCCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACCGCGttt    >  1:3538797/1‑150 (MQ=255)

AATGATTTGCATAGGCTTAACTGCCGGAGCAACGCGGTCACGGCCATCAAATGGGCGTGCGGTCATTGGCACCGGAACTACCGGACCTTCTTCAATCTTAACGATTTTTTTCTGTT‑CTAAATCAACGACCGCCACCAGGTTTTCGATGGGATGTGCCCAGTAGTTGCCATCACCGACATCAAGATAGCTGATGACTTTGAGCAACCGGGCATCTTGTTTCAGGCCATCTTTACCATCGAAATAACCTACGGTCAGCGGCGTGGTAATCACTTTTTTCGCATCAGTAATACCGCGTTTCT  >  CP009273/1444590‑1444888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A