Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F488 I0 R1	1275	300.1	10328444	91.0%	9398884	150.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC	CP009273	3,841,409	+CAACCAG	100%	coding (576/1320 nt)	uhpC ←	membrane protein regulates uhpT expression

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3841409	0 (0.000)	288 (1.080) +CAACCAG	152/244	NT	100%	coding (576/1320 nt)	uhpC	membrane protein regulates uhpT expression
*	?	CP009273	3841410 =	0 (0.000)	288 (1.080) +CAACCAG	152/244	NT	100%	coding (575/1320 nt)	uhpC	membrane protein regulates uhpT expression

Only 100 of 354 total aligned reads displayed.

GGATCTCTTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3841261‑3841409

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAA  >  CP009273/3841410‑3841558

                                                                                                                                                     |||||||

GGATCTCTTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATAC                                                                                                                                                             >  1:4643081/1‑150

 GATCTCTTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACA                                                                                                                                                            >  1:1546376/1‑150

  ATCTCTTTACGCGTCAACCCTGCCCCTTATTGTTGTTGATCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAA                                                                                                                                                           <  2:5065475/150‑1

    CTCTTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACC                                                                                                                                                         <  1:880394/150‑1

     TCTTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCA                                                                                                                                                        >  2:2253669/1‑150

      CTTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAG                                                                                                                                                       >  1:2248476/1‑150

      CTTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAG                                                                                                                                                       >  2:52858/1‑150

       TTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGC                                                                                                                                                      >  1:490631/1‑150

       TTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGC                                                                                                                                                      <  1:1122015/150‑1

        TTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCA                                                                                                                                                     <  2:4094253/150‑1

            GCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCA                                                                                                                                                 <  1:577543/150‑1

             CGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAG                                                                                                                                                <  1:3417004/150‑1

                      TGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCA                                                                                                                                       <  2:79418/150‑1

                       GCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCAT                                                                                                                                      >  2:3636733/1‑150

                           CTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCG                                                                                                                                  >  1:3635998/1‑150

                             aCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGACTTTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCATAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGC                                                                                                                                <  1:4025450/149‑1

                                  TTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCC                                                                                                                           >  1:5065932/1‑150

                                  TTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCC                                                                                                                           <  2:3852374/150‑1

                                      TGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCC                                                                                                                       >  2:1401002/1‑150

                                       GAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCG                                                                                                                      >  1:1289440/1‑150

                                         GCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTA                                                                                                                    <  1:2268017/150‑1

                                         GCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTA                                                                                                                    <  1:1926951/150‑1

                                         GCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTA                                                                                                                    <  1:1401002/150‑1

                                          CAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAA                                                                                                                   >  1:626374/1‑150

                                          CAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAA                                                                                                                   >  1:238172/1‑150

                                              cTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCA                                                                                                               <  2:3724900/149‑1

                                                CCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGC                                                                                                             <  2:3949418/150‑1

                                                CCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGC                                                                                                             <  2:1782335/150‑1

                                                 CAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCG                                                                                                            >  2:3459390/1‑150

                                                 CAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCG                                                                                                            >  2:2502360/1‑150

                                                   GCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCA                                                                                                          <  1:3095707/150‑1

                                                     GCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGC                                                                                                        <  2:2538561/150‑1

                                                      CGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATGCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCC                                                                                                       <  1:3821682/150‑1

                                                      CGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCC                                                                                                       <  2:3789763/150‑1

                                                      CGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCC                                                                                                       >  1:1139343/1‑150

                                                        TCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGC                                                                                                     >  2:2866968/1‑150

                                                         CGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCT                                                                                                    <  1:3224264/150‑1

                                                           TGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGC                                                                                                  >  1:4774012/1‑150

                                                               GCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATC                                                                                              >  2:4674857/1‑150

                                                                CCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCA                                                                                             >  1:4492874/1‑150

                                                                CCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCA                                                                                             >  2:1700729/1‑150

                                                                 CATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCAC                                                                                            <  1:788132/150‑1

                                                                   TTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAA                                                                                          >  2:3386236/1‑150

                                                                    TCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTCTCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAAT                                                                                         >  2:1585592/1‑150

                                                                    TCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAAT                                                                                         <  1:148804/150‑1

                                                                    TCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAAT                                                                                         <  1:1202255/150‑1

                                                                        CGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGA                                                                                     >  1:4156224/1‑150

                                                                         GACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAA                                                                                    >  2:2962197/1‑150

                                                                          ACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAAT                                                                                   >  2:1577829/1‑150

                                                                           CCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATG                                                                                  <  1:1370920/150‑1

                                                                           CCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATG                                                                                  <  1:715226/150‑1

                                                                           CCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATG                                                                                  >  1:355410/1‑150

                                                                            CGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGA                                                                                 >  1:4834010/1‑150

                                                                            CGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGA                                                                                 >  2:4942455/1‑150

                                                                             GCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAG                                                                                >  2:448209/1‑150

                                                                              CCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGACTGAGT                                                                               >  2:3098879/1‑150

                                                                              CCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGT                                                                               <  2:4414853/150‑1

                                                                              CCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGT                                                                               <  2:1844702/150‑1

                                                                               CGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTG                                                                              >  2:720129/1‑150

                                                                               CGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTG                                                                              >  1:1879579/1‑150

                                                                               CGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTG                                                                              >  2:2758329/1‑150

                                                                                GGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGC                                                                             >  1:963463/1‑150

                                                                                   AAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCC                                                                          >  1:4703679/1‑150

                                                                                    AACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCG                                                                         <  2:1283465/150‑1

                                                                                        TAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGA                                                                     <  1:2813321/150‑1

                                                                                             CCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAAACAGCAACCAGCAATCATCTTCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGAGCCGCCGTCGTTA                                                                <  2:2999702/150‑1

                                                                                              CTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTAT                                                               <  2:912297/150‑1

                                                                                               TGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATG                                                              <  1:3014978/150‑1

                                                                                                GCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGC                                                             <  1:1677991/150‑1

                                                                                                 CGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCG                                                            <  2:1161496/150‑1

                                                                                                  GGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGC                                                           >  1:2312433/1‑150

                                                                                                   GGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCC                                                          >  2:823837/1‑150

                                                                                                       ATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGT                                                      <  2:3223391/150‑1

                                                                                                        TCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTT                                                     <  1:562136/150‑1

                                                                                                         CGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTC                                                    >  2:3550796/1‑150

                                                                                                           CGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCA                                                  <  1:4467957/150‑1

                                                                                                            GTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCAT                                                 <  2:4867182/150‑1

                                                                                                               GCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAAT                                              >  1:2088584/1‑150

                                                                                                                CCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATG                                             <  2:3913523/150‑1

                                                                                                                      GCAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACC                                       <  2:2013494/150‑1

                                                                                                                       CAGAGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCA                                      >  1:2579843/1‑150

                                                                                                                          AGAAAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACC                                   >  2:579153/1‑150

                                                                                                                             AAAATCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCC                                <  1:3967018/150‑1

                                                                                                                                 TCCCCACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGC                            >  2:4289090/1‑150

                                                                                                                                     CACGACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGG                        <  2:676887/150‑1

                                                                                                                                        GACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTAC                     >  2:4270530/1‑150

                                                                                                                                         ACTATCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACG                    <  2:4433251/150‑1

                                                                                                                                             TCGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAA                >  2:1673260/1‑150

                                                                                                                                              CGCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAAT               <  1:1671934/150‑1

                                                                                                                                               GCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATA              >  2:4181354/1‑150

                                                                                                                                               GCCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATA              >  2:3569838/1‑150

                                                                                                                                                CCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATAC             >  1:4370759/1‑150

                                                                                                                                                CCATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATAC             >  2:1234259/1‑150

                                                                                                                                                  ATACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATACCA           >  2:475556/1‑150

                                                                                                                                                   TACAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATACCAG          <  2:3151772/150‑1

                                                                                                                                                   TACAACCAACAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATACCAG          <  2:3968556/150‑1

                                                                                                                                                     CAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGACTACCAGGC        >  2:1340927/1‑150

                                                                                                                                                     CAACCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATACCAGGC        <  1:2741796/150‑1

                                                                                                                                                        CCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGT     >  1:250278/1‑150

                                                                                                                                                        CCAGCAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGT     <  2:5123493/150‑1

                                                                                                                                                     |||||||

GGATCTCTTTACGCGTCAACCCTGCCCCTTCTTGTTGTTGAGCAATTTCCAGCGCGTCGTGTCGCCATTCACCGACCGCCGGTAAACCTAACGCCTGCGGGCGATCGCGTAGCCGCCAGCAGAGAAAAATCCCCACGACTATCGCCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3841261‑3841409

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAACCAGCAATCATCATCCCGGCACGCCAGCCGTAATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAA  >  CP009273/3841410‑3841558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A