Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F218 I0 R1 1506 278.7 9275112 94.5% 8764980 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,268,535 A→T 41.1% S191S (TCA→TCT)  chaC → cation transport regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,268,5350AT41.1% 182.4 / inf 263S191S (TCA→TCT) chaCcation transport regulator
Reads supporting (aligned to +/- strand):  ref base A (82/73);  new base T (62/46);  total (144/119)
Fisher's exact test for biased strand distribution p-value = 5.29e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.64e-01

Only 100 of 268 total aligned reads displayed.

TTGATGATGGACGCACAGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGG  >  CP009273/1268387‑1268678
                                                                                                                                                    |                                                                                                                                               
ttgatGATGGACGCACAGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCAc                                                                                                                                                >  2:601569/1‑150 (MQ=255)
 tgatgaTGGACGCACAGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTctct                                                                                                                                               <  2:1002501/150‑1 (MQ=255)
 tgatgaTGGACGCACAGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTctct                                                                                                                                               <  1:1392939/150‑1 (MQ=255)
 tgatgaTGGACGCACAGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTctct                                                                                                                                               >  2:1028700/1‑150 (MQ=255)
  gatgatGGACGCACAGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTg                                                                                                                                              <  2:4121950/150‑1 (MQ=255)
   atgatgGACGCACAGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTgg                                                                                                                                             >  1:3318530/1‑150 (MQ=255)
    tgatgGACGCACAGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGa                                                                                                                                            >  2:2546450/1‑150 (MQ=255)
    tgatgGACGCACAGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGa                                                                                                                                            >  1:4059932/1‑150 (MQ=255)
     gatgGACGCACAGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGCaa                                                                                                                                           <  2:104879/150‑1 (MQ=255)
      atgGACGCACAGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAAc                                                                                                                                          >  1:679508/1‑150 (MQ=255)
       tgGACGCACAGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACCATACCTGTTTTCACTGGAACa                                                                                                                                         <  2:4363107/150‑1 (MQ=255)
         gACGCACAGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAgg                                                                                                                                       >  1:3813449/1‑150 (MQ=255)
         gACGCACAGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAgg                                                                                                                                       <  1:1303005/150‑1 (MQ=255)
         gACGCACAGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAgg                                                                                                                                       <  1:4389859/150‑1 (MQ=255)
           cGCACAGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAg                                                                                                                                     <  2:2773063/150‑1 (MQ=255)
           cGCACAGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAg                                                                                                                                     <  2:2770903/150‑1 (MQ=255)
            gCACAGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGc                                                                                                                                    <  2:4627556/150‑1 (MQ=255)
             cacaGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCt                                                                                                                                   >  1:3797871/1‑150 (MQ=255)
             cacaGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCt                                                                                                                                   <  2:1974299/150‑1 (MQ=255)
              acaGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCtt                                                                                                                                  >  2:1454779/1‑150 (MQ=255)
              acaGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCtt                                                                                                                                  >  1:3911787/1‑150 (MQ=255)
               caGTTATCGCCTTTGTTTTTATTTTTGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCTGGTCATCGCGCCGTTGTTTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACTATACCTTTTTTCACTGGAACAGGAGCTTa                                                                                                                                 <  2:2652657/150‑1 (MQ=255)
               caGTAATCGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTa                                                                                                                                 <  2:2045166/150‑1 (MQ=255)
               caGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTa                                                                                                                                 >  2:3294086/1‑150 (MQ=255)
                 gTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATc                                                                                                                               >  2:2687764/1‑150 (MQ=255)
                    aaCGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCaaa                                                                                                                            >  1:297807/1‑150 (MQ=255)
                        ccATTGTGATTATTAAGGACCCGAGACATCCAGAATATGAATCTGATACTCTCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCTAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGTAGCTTATCAAACTgg                                                                                                                        >  1:1375542/1‑150 (MQ=255)
                         cATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTggg                                                                                                                       <  1:306828/150‑1 (MQ=255)
                            tgtgTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAAt                                                                                                                    >  1:4493341/1‑150 (MQ=255)
                                tttATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAg                                                                                                                >  1:3224781/1‑150 (MQ=255)
                                   attatGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGAc                                                                                                             <  1:2642557/150‑1 (MQ=255)
                                    ttatGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACg                                                                                                            <  2:3719735/150‑1 (MQ=255)
                                      atGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGAt                                                                                                          >  2:1998875/1‑150 (MQ=255)
                                       tGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATg                                                                                                         >  1:2000165/1‑150 (MQ=255)
                                        ggACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATgg                                                                                                        <  1:3448959/150‑1 (MQ=255)
                                        ggACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGACTGCAGGACGATgg                                                                                                        >  2:3189206/1‑150 (MQ=255)
                                          aCCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGc                                                                                                      <  2:2266288/150‑1 (MQ=255)
                                            ccGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGGGCTTATCAAACTGGGAATGCAGGACGATGGGCTg                                                                                                    <  2:770454/150‑1 (MQ=255)
                                             cgcgACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGa                                                                                                   <  2:1637280/150‑1 (MQ=255)
                                              gcgACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGaa                                                                                                  <  1:2147946/150‑1 (MQ=255)
                                               cgACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAAt                                                                                                 >  2:2249283/1‑150 (MQ=255)
                                               cgACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAAt                                                                                                 <  2:1078881/150‑1 (MQ=255)
                                                    tCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGAttt                                                                                            <  2:1974628/150‑1 (MQ=255)
                                                       aGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCt                                                                                         <  2:2729934/150‑1 (MQ=255)
                                                         aaTATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTgg                                                                                       >  1:3914467/1‑150 (MQ=255)
                                                          atatGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGt                                                                                      <  1:2039669/150‑1 (MQ=255)
                                                           tatGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTa                                                                                     <  2:2855009/150‑1 (MQ=255)
                                                             tGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATc                                                                                   >  2:2310448/1‑150 (MQ=255)
                                                              gAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCg                                                                                  >  1:3715019/1‑150 (MQ=255)
                                                               aaTCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCgg                                                                                 <  2:3596344/150‑1 (MQ=255)
                                                                   tGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTaaa                                                                             >  1:1257498/1‑150 (MQ=255)
                                                                   tGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTaaa                                                                             >  2:252445/1‑150 (MQ=255)
                                                                       aCTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTaaaaaaa                                                                         >  1:4591412/1‑150 (MQ=255)
                                                                        cTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAAc                                                                        >  1:4322811/1‑150 (MQ=255)
                                                                           gcgcTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAActgc                                                                     <  2:4499943/150‑1 (MQ=255)
                                                                             gcTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAActgctg                                                                   >  1:349733/1‑150 (MQ=255)
                                                                              cTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTgg                                                                  >  1:1532759/1‑150 (MQ=255)
                                                                                  ggTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGga                                                              <  1:1003489/150‑1 (MQ=255)
                                                                                  ggTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGga                                                              <  1:1077652/150‑1 (MQ=255)
                                                                                     cATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGaa                                                           >  1:662514/1‑150 (MQ=255)
                                                                                      aTCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAAt                                                          >  1:4024113/1‑150 (MQ=255)
                                                                                        cgcgCCGTTGATTGCTGCGGCGAGCTGTCCGCTGGGAACCAACGCACAATACATGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATCGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAAttt                                                        >  2:2955681/1‑150 (MQ=255)
                                                                                        cgcgCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAAttt                                                        <  2:937374/150‑1 (MQ=255)
                                                                                          cgcCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTc                                                      >  1:4161829/1‑150 (MQ=255)
                                                                                           gcCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTcc                                                     <  2:4103145/150‑1 (MQ=255)
                                                                                            ccGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCg                                                    <  1:1710499/150‑1 (MQ=255)
                                                                                             cGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCgg                                                   <  2:4591412/150‑1 (MQ=255)
                                                                                               ttGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGAt                                                 <  2:1329359/150‑1 (MQ=255)
                                                                                                   ttGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGgtg                                             <  2:2948834/150‑1 (MQ=255)
                                                                                                     gcggcggcgAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGgtgtg                                           <  1:4284962/150‑1 (MQ=255)
                                                                                                       ggcggcgAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGtt                                         >  1:2749830/1‑150 (MQ=255)
                                                                                                       ggcggcgAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGtt                                         >  2:1842318/1‑150 (MQ=255)
                                                                                                       ggcggcgAGCGGTCCGCTGGGAACCAACGCACAATACCTGATTTCACTGTAAAATGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGtt                                         >  2:3498553/1‑150 (MQ=255)
                                                                                                         cggcgAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTAc                                       <  1:2346314/150‑1 (MQ=255)
                                                                                                         cggcgAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTAc                                       <  1:742813/150‑1 (MQ=255)
                                                                                                          ggcgAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGAGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACg                                      <  1:397489/150‑1 (MQ=255)
                                                                                                             gAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGAAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTcc                                   >  2:707321/1‑150 (MQ=255)
                                                                                                               gCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCgg                                 >  1:614926/1‑150 (MQ=255)
                                                                                                                 ggTCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGa                               >  1:772773/1‑150 (MQ=255)
                                                                                                                  gTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGAt                              <  1:4536559/150‑1 (MQ=255)
                                                                                                                   tCCGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGAtt                             <  2:2847825/150‑1 (MQ=255)
                                                                                                                     cGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCg                           <  2:122451/150‑1 (MQ=255)
                                                                                                                     cGCTGGGAACCAACGCACAATACCTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCg                           >  2:4250640/1‑150 (MQ=255)
                                                                                                                        tGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCt                        >  1:1148237/1‑150 (MQ=255)
                                                                                                                         gggAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTg                       <  1:1633171/150‑1 (MQ=255)
                                                                                                                         gggAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTg                       <  2:3695323/150‑1 (MQ=255)
                                                                                                                          ggAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGa                      >  1:4104709/1‑150 (MQ=255)
                                                                                                                          ggAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGa                      >  1:3663789/1‑150 (MQ=255)
                                                                                                                           gAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAg                     >  2:4138897/1‑150 (MQ=255)
                                                                                                                               cAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTaaa                 <  2:4026398/150‑1 (MQ=255)
                                                                                                                               cAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTaaa                 >  1:3402116/1‑150 (MQ=255)
                                                                                                                               cAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTaaa                 >  2:2610162/1‑150 (MQ=255)
                                                                                                                               aaaCGCACAAAACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATTCAGGACGATGGGCTCAATGAGGTGCTTGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCAGGGATTCGCCTGAGTaaa                 >  2:3866578/2‑150 (MQ=255)
                                                                                                                                aaCGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAAc                <  2:72233/150‑1 (MQ=255)
                                                                                                                                   gCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTc             >  1:2253471/1‑150 (MQ=255)
                                                                                                                                     acaATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTccc           >  1:532518/1‑150 (MQ=255)
                                                                                                                                           ccTGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAg     <  1:3951244/150‑1 (MQ=255)
                                                                                                                                             tGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTg   <  2:1679466/150‑1 (MQ=255)
                                                                                                                                             tGTTTTCTCTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGAGTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTg   >  2:447998/1‑150 (MQ=255)
                                                                                                                                              gTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTgg  <  2:418881/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                               
TTGATGATGGACGCACAGTAAACGCCATTGTGTTTATTATGGACCCGCGACATCCAGAATATGAATCTGATACTCGCGCTCAGGTCATCGCGCCGTTGATTGCGGCGGCGAGCGGTCCGCTGGGAACCAACGCACAATACCTGTTTTCACTGGAACAGGAGCTTATCAAACTGGGAATGCAGGACGATGGGCTGAATGATTTGCTGGTATCGGTAAAAAAACTGCTGGCGGAGAATTTTCCGGATGGTGTGTTACGTCCGGGATTCGCCTGAGTAAACTTCCCGCATAGTGG  >  CP009273/1268387‑1268678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A