Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F218 I0 R1 1506 278.7 9275112 94.5% 8764980 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,281,560 T→A 48.6% pseudogene (834/2525 nt) yejO ← pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,281,5600TA48.6% 26.0 / inf 245pseudogene (834/2525 nt)yejOpseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system
Reads supporting (aligned to +/- strand):  ref base T (66/60);  new base A (63/56);  total (129/116)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 245 total aligned reads displayed.

CGTTAGCGCGGCCATTGTTGATAACCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACTGTTTGGACCACTCACTTCCAGCGCATTC  >  CP009273/2281413‑2281708
                                                                                                                                                   |                                                                                                                                                    
cGTTAGCGCGGCCATTGTTGATAACCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAgg                                                                                                                                                    <  1:2402895/150‑1 (MQ=255)
 gTTAGCGCGGCCATTGTTGATAACCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGc                                                                                                                                                   <  1:216622/150‑1 (MQ=255)
  ttAGCGCGGCCATTGTTGATAACCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCa                                                                                                                                                  >  2:698900/1‑150 (MQ=255)
   tAGCGCGGCCATTGTTGATAACCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCAt                                                                                                                                                 <  1:3008670/150‑1 (MQ=255)
       gcgGCCATTGTTGATAACCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCtt                                                                                                                                             <  1:2805669/150‑1 (MQ=255)
       gcgGCCATTGTTGATAACCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCtt                                                                                                                                             <  1:322440/150‑1 (MQ=255)
           ccATTGTTGATAACCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCa                                                                                                                                         >  2:3272886/1‑150 (MQ=255)
            cATTGTTGATAACCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCaa                                                                                                                                        >  1:3035161/1‑150 (MQ=255)
            cATTGTTGATAACCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACGTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCaa                                                                                                                                        <  2:3231742/150‑1 (MQ=255)
             aTTGTTGATAACCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAg                                                                                                                                       <  1:720230/150‑1 (MQ=255)
              ttgttgATAACCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAgg                                                                                                                                      <  1:1529022/150‑1 (MQ=255)
              ttgttgATAACCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAgg                                                                                                                                      <  2:2913932/150‑1 (MQ=255)
                gttgATAACCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGAt                                                                                                                                    <  2:2173000/150‑1 (MQ=255)
                 ttgATAACCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATa                                                                                                                                   >  1:1625832/1‑150 (MQ=255)
                 ttgATAACCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATa                                                                                                                                   >  2:145953/1‑150 (MQ=255)
                    aTAACCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTa                                                                                                                                <  2:1352449/150‑1 (MQ=255)
                     tAACCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTAt                                                                                                                               <  1:2208194/150‑1 (MQ=255)
                       aCCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCa                                                                                                                             >  1:560081/1‑150 (MQ=255)
                       aCCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCa                                                                                                                             <  2:3996464/150‑1 (MQ=255)
                         cATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAAt                                                                                                                           >  2:1312974/1‑150 (MQ=255)
                         cATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAAt                                                                                                                           >  2:797994/1‑150 (MQ=255)
                          atatTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATg                                                                                                                          >  1:1790039/1‑150 (MQ=255)
                           tatTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATgg                                                                                                                         >  2:3272115/1‑150 (MQ=255)
                           tatTTTCAGACATGTCATTTGAGGAATACGTGATACATCCATTCAGATATGATCGACCGAGATCATATACCTCAATTGCCTTCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATgg                                                                                                                         >  2:4241591/1‑150 (MQ=255)
                            atTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGc                                                                                                                        >  2:4195211/1‑150 (MQ=255)
                              tttCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCt                                                                                                                      >  1:2624100/1‑150 (MQ=255)
                                tCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGc                                                                                                                    <  1:855411/150‑1 (MQ=255)
                                  agagATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCgt                                                                                                                  <  1:4403372/150‑1 (MQ=255)
                                   gagaTGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCgtg                                                                                                                 >  2:569164/1‑150 (MQ=255)
                                   gagaTGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCgtg                                                                                                                 <  2:3456976/150‑1 (MQ=255)
                                    agaTGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCgtgt                                                                                                                >  2:2499374/1‑150 (MQ=255)
                                      aTGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGtcc                                                                                                              <  1:2333254/150‑1 (MQ=255)
                                      aTGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCGAGGATAGTATCAATGGCCTGCGTGtcc                                                                                                              >  2:3551497/1‑150 (MQ=255)
                                           ttttGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCAt                                                                                                         >  2:1857954/1‑150 (MQ=255)
                                           ttttGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCAt                                                                                                         <  1:99858/150‑1 (MQ=255)
                                             ttGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATaa                                                                                                       <  2:2115737/150‑1 (MQ=255)
                                                 ggAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAAt                                                                                                   <  2:2554808/150‑1 (MQ=255)
                                                  gAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATg                                                                                                  <  1:2384257/150‑1 (MQ=255)
                                                  gAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATg                                                                                                  >  1:3416587/1‑150 (MQ=255)
                                                   aaTACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGa                                                                                                 >  2:1857436/1‑150 (MQ=255)
                                                   aaTACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATGGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGa                                                                                                 >  2:2006780/1‑150 (MQ=255)
                                                    aTACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAg                                                                                                >  2:2686270/1‑150 (MQ=255)
                                                     tACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGc                                                                                               >  2:3190120/1‑150 (MQ=255)
                                                     tACGTGAGACTTCAATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCATGAGTGTCCTCCATAACAATGAGc                                                                                               >  2:3771944/1‑150 (MQ=255)
                                                        gTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCg                                                                                            >  1:3606387/1‑150 (MQ=255)
                                                        gTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCg                                                                                            >  1:3528755/1‑150 (MQ=255)
                                                              cTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACca                                                                                      >  2:3247051/1‑150 (MQ=255)
                                                                 ccATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACcatca                                                                                   >  2:2423543/1‑150 (MQ=255)
                                                                   aTTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCatcatc                                                                                 <  2:2529317/150‑1 (MQ=255)
                                                                    ttCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATcc                                                                                <  1:1226729/150‑1 (MQ=255)
                                                                     tCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCa                                                                               >  2:1941221/1‑150 (MQ=255)
                                                                      cTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAg                                                                              <  2:1669662/150‑1 (MQ=255)
                                                                        gATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGtt                                                                            <  1:3935907/150‑1 (MQ=255)
                                                                            tGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATa                                                                        <  1:4568394/150‑1 (MQ=255)
                                                                              aTCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCCGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAAt                                                                      <  2:3758657/150‑1 (MQ=255)
                                                                              aTCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCAGCATCCAGTTCATAAt                                                                      >  1:123557/1‑150 (MQ=255)
                                                                               tCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAAtt                                                                     <  1:4051312/150‑1 (MQ=255)
                                                                               tCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAAtt                                                                     <  2:659803/150‑1 (MQ=255)
                                                                               tCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAAtt                                                                     <  1:2944248/150‑1 (MQ=255)
                                                                                   ccGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAAtttttt                                                                 <  2:4369705/150‑1 (MQ=255)
                                                                                     gagaTCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGa                                                               >  1:4221113/1‑150 (MQ=255)
                                                                                     gagaTCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGa                                                               >  2:22277/1‑150 (MQ=255)
                                                                                      agaTCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGac                                                              <  2:2487321/150‑1 (MQ=255)
                                                                                        aTCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGacac                                                            >  1:1908126/1‑150 (MQ=255)
                                                                                          cATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGacacac                                                          <  2:2858380/150‑1 (MQ=255)
                                                                                          cATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGacacac                                                          >  2:1112308/1‑150 (MQ=255)
                                                                                              taCCGCATTTTCCTGCACTTTCTTACCAGTATCCTTTCCCAGCGATTGAATTGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTACTCCATTAAAATGAGCCCGGAACCATCATCCAGTTAATAATTTTTTGACACACCATc                                                      <  1:3627959/150‑1 (MQ=255)
                                                                                              taCCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATc                                                      >  1:768041/1‑150 (MQ=255)
                                                                                                  gCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCtttt                                                  <  2:1527663/150‑1 (MQ=255)
                                                                                                  gCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCtttt                                                  >  1:1140615/1‑150 (MQ=255)
                                                                                                   cATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTta                                                 >  1:706186/1‑150 (MQ=255)
                                                                                                        gCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCTTAATTTTTTGACACACCATCTTTTATACTa                                            <  2:2531793/150‑1 (MQ=255)
                                                                                                           tGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAAt                                         >  2:2429440/1‑150 (MQ=255)
                                                                                                              aCTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTgg                                      >  1:977407/1‑150 (MQ=255)
                                                                                                                tttCGTACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGcc                                    <  1:1010758/150‑1 (MQ=255)
                                                                                                                  tCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCtt                                  <  2:1099450/150‑1 (MQ=255)
                                                                                                                   cGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCttt                                 >  1:2950751/1‑150 (MQ=255)
                                                                                                                   cGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCttt                                 >  2:2652867/1‑150 (MQ=255)
                                                                                                                     tACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTAc                               >  2:3121611/1‑150 (MQ=255)
                                                                                                                     tACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTAc                               <  2:4052486/150‑1 (MQ=255)
                                                                                                                     tACCAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTAc                               <  2:3182713/150‑1 (MQ=255)
                                                                                                                      aCCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACt                              <  1:4340996/150‑1 (MQ=255)
                                                                                                                       ccAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACTg                             >  1:3583188/1‑150 (MQ=255)
                                                                                                                       ccAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACTg                             <  2:503736/150‑1 (MQ=255)
                                                                                                                       ccAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACTg                             <  2:3973739/150‑1 (MQ=255)
                                                                                                                        cAGTATCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACTGt                            >  2:1996711/1‑150 (MQ=255)
                                                                                                                          gTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACTGttt                          >  1:2583170/1‑150 (MQ=255)
                                                                                                                             tCCTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACTGTTTGGa                       <  1:1448642/150‑1 (MQ=255)
                                                                                                                              ccTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACTGTTTGGAc                      >  2:2052284/1‑150 (MQ=255)
                                                                                                                              ccTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACTGTTTGGAc                      >  1:3177149/1‑150 (MQ=255)
                                                                                                                               cTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACTGTTTGGAcc                     >  1:465526/1‑150 (MQ=255)
                                                                                                                               cTTTCCCAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACTGTTTGGAcc                     <  1:103767/150‑1 (MQ=255)
                                                                                                                                tttCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACTGTTTGGACca                    >  2:1969473/1‑150 (MQ=255)
                                                                                                                                   cccAGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAA‑TTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACTGTTTGGACcactca                >  1:1662999/1‑150 (MQ=255)
                                                                                                                                      aGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACTGTTTGGACcactcact              <  1:452560/150‑1 (MQ=255)
                                                                                                                                      aGCGATTGCATAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACTGTTTGGACcactcact              <  2:3332827/150‑1 (MQ=255)
                                                                                                                                             gCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACTGTTTGGACCACTCACTTCCAgcg       >  1:3956992/1‑150 (MQ=255)
                                                                                                                                               aTAGAGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACTGTTTGGACCACTCACTTCCAGCGCa     >  2:2319734/1‑150 (MQ=255)
                                                                                                                                                 aGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACTGTTTGGACCACTCACTTCCAGCGCAtt   <  1:3797230/150‑1 (MQ=255)
                                                                                                                                                  gTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACTGTTTGGACCACTCACTTCCAGCGCATTc  <  2:3479697/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
CGTTAGCGCGGCCATTGTTGATAACCATATTTTCAGAGATGGCTTTTGAGGAATACGTGATACTTCCATTCTGATATGATCGACCGAGATCATATACCGCATTTGCCTGCACTTTCGTACCAGTATCCTTTCCCAGCGATTGCATAGTGGCATGCTTATCAAGGATAGTATCAATGGCCTGCGTGTCCTCCATAACAATGAGCCCGGAACCATCATCCAGTTCATAATTTTTTGACACACCATCTTTTATACTAAATTGGCCTTTACTGTTTGGACCACTCACTTCCAGCGCATTC  >  CP009273/2281413‑2281708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A