Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F159 I0 R1 879 305.9 9588012 96.6% 9262019 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,586,871 G→T 34.5% intergenic (‑172/+51) hipB ← / ← yneO antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,586,8710GT34.5% 415.9 / 277.0 278intergenic (‑172/+51)hipB/yneOantitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog
Reads supporting (aligned to +/- strand):  ref base G (108/74);  new base T (60/36);  total (168/110)
Fisher's exact test for biased strand distribution p-value = 6.99e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.00e-01

Only 100 of 284 total aligned reads displayed.

ATCCGCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGGTTGTTATT  >  CP009273/1586722‑1587020
                                                                                                                                                     |                                                                                                                                                     
     cTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTc                                                                                                                                                  >  2:2001071/1‑150 (MQ=255)
         aGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCa                                                                                                                                              >  2:3623432/1‑150 (MQ=255)
         aGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCAGCTCTACGGGATAAACGCTGCGATATCCGCGATCGTGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCTCCGTTTTAAGTCGGCa                                                                                                                                              >  2:1385243/1‑150 (MQ=255)
          ggggATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCaa                                                                                                                                             <  2:4104788/150‑1 (MQ=255)
           gggATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTTAAGTCTGCAat                                                                                                                                            >  1:1038482/1‑150 (MQ=255)
            ggATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAata                                                                                                                                           >  2:844012/1‑150 (MQ=255)
            ggATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAata                                                                                                                                           >  1:375018/1‑150 (MQ=255)
            ggATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTGGATGCGCCGTTTGAAGTCGGCAata                                                                                                                                           >  1:374927/1‑150 (MQ=255)
              atatTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATAtt                                                                                                                                         >  1:3923264/1‑150 (MQ=255)
              atatTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATGTAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATAtt                                                                                                                                         >  1:528988/1‑150 (MQ=255)
               tattatAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTa                                                                                                                                        <  1:129740/150‑1 (MQ=255)
               tattatAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTa                                                                                                                                        >  2:185871/1‑150 (MQ=255)
                 ttatAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAg                                                                                                                                      <  1:2758670/150‑1 (MQ=255)
                  tataAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTTAATTCGGCAATATTaatc                                                                                                                                     >  1:4082582/1‑148 (MQ=255)
                  tataAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGc                                                                                                                                     <  2:2067644/150‑1 (MQ=255)
                  tataAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTaatc                                                                                                                                     >  2:915854/1‑148 (MQ=255)
                   ataAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGcc                                                                                                                                    <  2:3639066/150‑1 (MQ=255)
                       gTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGCCGCAt                                                                                                                                <  2:2672697/150‑1 (MQ=255)
                       gTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCAt                                                                                                                                <  2:312343/150‑1 (MQ=255)
                           tATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCa                                                                                                                            >  2:2630112/1‑150 (MQ=255)
                            aTCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCAt                                                                                                                           <  1:3521470/150‑1 (MQ=255)
                              ccTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGCCGCATGCCAtct                                                                                                                         >  2:418099/1‑150 (MQ=255)
                              ccTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGAGCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTGTTAAGTCGGCAATATTAAGCCGCATGCCAtct                                                                                                                         >  2:417519/1‑150 (MQ=255)
                               cTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTTTAGTCGGCAATATTAAGCCGCATGCCAtctc                                                                                                                        <  1:4506112/150‑1 (MQ=255)
                               atttAGTGTGTATAAGTCAATCTGGAAACACATCTTATCCTCTCTAGGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCAtctc                                                                                                                        <  1:3099007/149‑1 (MQ=255)
                                tttAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGCCGCATGCCCTCTCg                                                                                                                       >  1:2247046/1‑150 (MQ=255)
                                tttAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGCCGCATGCCATCTCg                                                                                                                       <  2:695611/150‑1 (MQ=255)
                                   aGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACa                                                                                                                    >  1:804633/1‑150 (MQ=255)
                                   aGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACa                                                                                                                    >  2:554287/1‑150 (MQ=255)
                                    gTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACAt                                                                                                                   >  1:2553812/1‑150 (MQ=255)
                                     tGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATg                                                                                                                  >  2:1044220/1‑150 (MQ=255)
                                       aGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCg                                                                                                                >  1:93568/1‑150 (MQ=255)
                                        ggATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCgg                                                                                                               >  2:3482630/1‑150 (MQ=255)
                                        ggATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCgg                                                                                                               >  1:4335575/1‑150 (MQ=255)
                                            aaGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTta                                                                                                           <  1:1857062/150‑1 (MQ=255)
                                            aaGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTta                                                                                                           <  1:494156/150‑1 (MQ=255)
                                              gTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTtata                                                                                                         >  2:4076824/1‑150 (MQ=255)
                                                   tCTGGAAACACATCTTATCCGCTCTACGGTATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGtt                                                                                                    <  1:1599700/150‑1 (MQ=255)
                                                     tGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTa                                                                                                  >  2:4604590/1‑150 (MQ=255)
                                                      ggAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTAc                                                                                                 <  1:4576867/150‑1 (MQ=255)
                                                         aaCACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAg                                                                                              >  2:2802176/1‑150 (MQ=255)
                                                            acaTCTTATCCGCTATACGGGATAATCGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCta                                                                                           <  1:3834122/150‑1 (MQ=255)
                                                             caTCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCtat                                                                                          <  2:4248187/150‑1 (MQ=255)
                                                               tCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTatat                                                                                        <  2:114432/150‑1 (MQ=255)
                                                               tCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTatat                                                                                        <  1:3579123/150‑1 (MQ=255)
                                                                 ttATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATAttt                                                                                      >  1:3245831/1‑150 (MQ=255)
                                                                  tATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAATTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTc                                                                                     >  1:2012332/1‑150 (MQ=255)
                                                                   aTCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCa                                                                                    >  1:1782070/1‑150 (MQ=255)
                                                                    tCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCAc                                                                                   <  1:4184423/150‑1 (MQ=255)
                                                                            aCGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTATACCAGCTATATTTCACTCCCAGCa                                                                           >  2:3166862/1‑150 (MQ=255)
                                                                              gggATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGGTTACCAGCTATATTTCACTCCCAGCATg                                                                         >  1:1341429/1‑150 (MQ=255)
                                                                              gggATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAATCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTAACTCCCAGCATg                                                                         >  2:3727232/1‑150 (MQ=255)
                                                                                gATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGcc                                                                       >  1:3959314/1‑150 (MQ=255)
                                                                                 aTAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGccc                                                                      >  1:3862943/1‑150 (MQ=255)
                                                                                   aaaCGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTg                                                                    >  2:1872017/1‑150 (MQ=255)
                                                                                     aCGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAg                                                                  <  1:1975023/150‑1 (MQ=255)
                                                                                      cGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGt                                                                 <  1:1990510/150‑1 (MQ=255)
                                                                                          gCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCg                                                             <  1:2421407/150‑1 (MQ=255)
                                                                                          gCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCg                                                             <  1:290262/150‑1 (MQ=255)
                                                                                           cGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAATCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGc                                                            >  2:3688493/1‑150 (MQ=255)
                                                                                               atCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCtata                                                        >  1:3545999/1‑150 (MQ=255)
                                                                                                 ccGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGc                                                      >  2:1046112/1‑150 (MQ=255)
                                                                                                  cgcgATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGcc                                                     <  2:4128575/150‑1 (MQ=255)
                                                                                                    cgATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTTAATTCGGCAATATTAAGCCGCAATACATCTCGACATGCTGCTTATACGGTTTACAAGCAATATTTCACAACCAGCAATCCCAGAGTATAGATAAATCCtt                                                   >  1:2149912/1‑150 (MQ=255)
                                                                                                     gATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCttt                                                  >  1:1517508/1‑150 (MQ=255)
                                                                                                         gcgGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCa                                              <  2:3790611/150‑1 (MQ=255)
                                                                                                          cgGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCAc                                             >  1:2641026/1‑150 (MQ=255)
                                                                                                           ggATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCAcc                                            >  2:1114576/1‑150 (MQ=255)
                                                                                                            gATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCt                                           <  1:1560105/150‑1 (MQ=255)
                                                                                                             aTAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTATATCACCTa                                          >  2:1544958/1‑150 (MQ=255)
                                                                                                                aaaaGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAACTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATATCCTTTATCACCTAGtt                                       >  1:814910/1‑150 (MQ=255)
                                                                                                                    ggaggaTTTAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGcac                                   <  1:3637453/150‑1 (MQ=255)
                                                                                                                    ggaggaTTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGcac                                   <  2:3896250/150‑1 (MQ=255)
                                                                                                                       ggaTTTAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACAcc                                <  1:2773612/150‑1 (MQ=255)
                                                                                                                        gaTTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCg                               <  1:3371473/150‑1 (MQ=255)
                                                                                                                        gaTTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCg                               <  1:2211038/150‑1 (MQ=255)
                                                                                                                         aTTTAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTCTAGCCTTTATCACCTAGTTGCACACAGa                              >  2:4741159/1‑150 (MQ=255)
                                                                                                                           ttAAATAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACa                            <  1:4749599/150‑1 (MQ=255)
                                                                                                                            tAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACAt                           >  1:878482/1‑150 (MQ=255)
                                                                                                                            tAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACAt                           >  1:1918523/1‑150 (MQ=255)
                                                                                                                             aaaTAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCCGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACAtt                          >  2:4784441/1‑150 (MQ=255)
                                                                                                                             aaaTAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACAtt                          >  1:4567155/1‑150 (MQ=255)
                                                                                                                               agaaGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTGTACCAGCTATAGTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACATTcc                        <  2:4016853/148‑1 (MQ=255)
                                                                                                                               aTAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACATTcc                        >  2:2233354/1‑150 (MQ=255)
                                                                                                                                tAAGGCGTTGATGCGCCGTTTTAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACATTccc                       >  2:603535/1‑150 (MQ=255)
                                                                                                                                tAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACATTccc                       >  2:2940442/1‑150 (MQ=255)
                                                                                                                                 aaGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACATTcccc                      >  1:460742/1‑150 (MQ=255)
                                                                                                                                        tGATGCGCCGTTTTAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACATTCCCCCACAGGc               >  2:2492561/1‑150 (MQ=255)
                                                                                                                                         gATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCGTATAAGGTTTACCAGCTATATTTCACTCCCAGCATGCCCGGAGTATCGCTATAGCCTTTATCACCGAGTTGCACACCGACATTCCCCCACAGGcg              >  1:4260843/1‑149 (MQ=255)
                                                                                                                                          aTGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACATTCCCCCACAGGCTa             >  2:3612372/1‑150 (MQ=255)
                                                                                                                                          aTGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACATTCCCCCACAGGCTa             <  1:4374357/150‑1 (MQ=255)
                                                                                                                                            gcgcCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAg           <  1:1035907/150‑1 (MQ=255)
                                                                                                                                            gcgcCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAg           <  1:690350/150‑1 (MQ=255)
                                                                                                                                            gcgcCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAg           <  2:3180202/150‑1 (MQ=255)
                                                                                                                                              gcCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGgt         <  1:915674/150‑1 (MQ=255)
                                                                                                                                               ccGTTTTAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGgtt        <  2:2546677/150‑1 (MQ=255)
                                                                                                                                               ccGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGgtt        <  1:1180623/150‑1 (MQ=255)
                                                                                                                                                cGTTTTAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGgttg       >  1:1654311/1‑150 (MQ=255)
                                                                                                                                                cGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGgttg       >  1:4035225/1‑150 (MQ=255)
                                                                                                                                                     gAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGGTTGTTAtt  <  2:2170166/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
ATCCGCTTAAGGGGATATTATAAGTTTTATCCTTTAGTGAGGATAAGTCAATCTGGAAACACATCTTATCCGCTCTACGGGATAAACGCTGCGATATCCGCGATCGCGGATAAAAAGGAGGATTTAAATAAGGCGTTGATGCGCCGTTTGAAGTCGGCAATATTAAGCCGCATGCCATCTCGACATGCGGCTTATACGGTTTACCAGCTATATTTCACTCCCAGCATGCCCTGAGTATCGCTATAGCCTTTATCACCTAGTTGCACACCGACATTCCCCCACAGGCTAAGGTTGTTATT  >  CP009273/1586722‑1587020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A