Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F55 I0 R1
|
519 |
344.2 |
11360120 |
95.0% |
10792114 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
1,194,365 |
G→T |
15.9% |
W72L (TGG→TTG) |
lit → |
e14 prophage; cell death peptidase, inhibitor of T4 late gene expression |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 1,194,365 | 0 | G | T | 15.9%
| 1135.3
/ 155.2
| 376 | W72L (TGG→TTG) | lit | e14 prophage; cell death peptidase, inhibitor of T4 late gene expression |
| Reads supporting (aligned to +/- strand): ref base G (143/173); new base T (28/32); total (171/205) |
| Fisher's exact test for biased strand distribution p-value = 8.88e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.55e-01 |
Only 100 of 380 total aligned reads displayed.
GAAGGAGCAAGATCTTAAAACGATAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTGCAAACAACA > CP009273/1194216‑1194513
|
ggAGCAAGATCTTAAAACGATAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGTATATATTTGGGc > 2:5469428/1‑150 (MQ=255)
ggAGCAAGATCTTAAAACGATAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGc < 1:3492838/150‑1 (MQ=255)
ggAGCAAGATCTTAAAACGATAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGc > 1:575437/1‑150 (MQ=255)
aGCAAGATCTTAAAACGATAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCAt > 1:4291660/1‑150 (MQ=255)
gCAAGATCTTAAAACGATAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCAtt < 2:2351034/150‑1 (MQ=255)
cAAGATCTTAAAACGATAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCAttt < 2:4959739/150‑1 (MQ=255)
cAAGATCTTAAAACGATAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCAttt > 1:2323651/1‑150 (MQ=255)
aGATCTTAAAACGATAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTc < 1:5354481/150‑1 (MQ=255)
aGATCTTAAAACGATAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTc < 1:202635/150‑1 (MQ=255)
gATCTTAAAACGATAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTTGGCATTTTcc < 2:4188825/150‑1 (MQ=255)
aTCTTAAAACGATAGTTGACGACAAAAAAATTATAATTTCAGTTTTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTTGGCATTTTCCa > 1:663587/1‑150 (MQ=255)
tCTTAAAACGATAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTTGGCATTTTCCaa > 2:214530/1‑150 (MQ=255)
ttAAAACGATAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑tt < 1:168025/150‑1 (MQ=255)
aaCGATAGTTGACGACAAAAAAATTATAATTTCAGATGTGAGTGAACCTGGTTTTAATATCCTAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATATGGGCATATTCCAA‑TTTCtt > 2:2910517/1‑150 (MQ=255)
cGATAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCtttt < 2:2411101/150‑1 (MQ=255)
aGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGt < 2:2660448/150‑1 (MQ=255)
cgacAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTAc < 2:3479731/150‑1 (MQ=255)
cgacAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTAc < 2:5149885/150‑1 (MQ=255)
cAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTTGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCa < 1:3775778/150‑1 (MQ=255)
cAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTTCGCa > 1:1115364/1‑150 (MQ=255)
aaaaaaTTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAag < 1:1492225/150‑1 (MQ=255)
aaaTTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGt < 1:3432100/150‑1 (MQ=255)
tttCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAAt < 1:5484157/150‑1 (MQ=255)
tttCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAAt < 1:4773568/150‑1 (MQ=255)
ttCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAAtc > 2:4175723/1‑150 (MQ=255)
gTTGTGCGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAg < 1:2910380/150‑1 (MQ=255)
ttGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGa < 2:3123902/150‑1 (MQ=255)
gagtgaACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGaaaaa < 1:5634860/150‑1 (MQ=255)
agtgaACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAaat < 1:4875912/150‑1 (MQ=255)
agtgaACCTGGTTTTAATATCCGAGACAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAaat < 2:5096156/150‑1 (MQ=255)
tgaACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAaataa < 1:847305/150‑1 (MQ=255)
gaACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAaataat > 1:3891592/1‑150 (MQ=255)
aaCCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTTGGCATTTTCCAATTTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAaataat > 1:5111894/1‑150 (MQ=255)
aaCCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAaataatt > 1:3623942/1‑149 (MQ=255)
aCCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAatga < 2:3894369/150‑1 (MQ=255)
ccTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTTGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAatgat < 1:5285558/150‑1 (MQ=255)
ggTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAg < 2:4905747/150‑1 (MQ=255)
tttAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTTGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCAc < 2:4157740/150‑1 (MQ=255)
tttatatCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCTCTTGAATATATTTGGGCTTTTTCCAA‑TTTCTTTTGGGTTTTTACGCATGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACt < 1:1811539/147‑1 (MQ=255)
ttAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACt < 1:5011846/150‑1 (MQ=255)
aaTATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGACATTGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACttt < 1:2989358/150‑1 (MQ=255)
tatCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGa < 1:5587444/150‑1 (MQ=255)
atCCGAGTCAGGAAGAATGAGAGTTATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGAt < 1:3065169/150‑1 (MQ=255)
tCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTATCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGAtt < 1:2672773/150‑1 (MQ=255)
tCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGAtt < 2:3442986/150‑1 (MQ=255)
ccGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATTGTTCTAACAGTAGCTTCACTTGAATATATTTTGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGAttt < 2:4607012/150‑1 (MQ=255)
ccGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGAttt > 1:3541547/1‑150 (MQ=255)
ccGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGAttt > 1:2181087/1‑150 (MQ=255)
gTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACa < 2:5635875/150‑1 (MQ=255)
gTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACa < 1:104453/150‑1 (MQ=255)
cAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTTGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAgg < 2:5358501/150‑1 (MQ=255)
cAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAgg < 2:1265588/150‑1 (MQ=255)
cAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAgg < 2:1904453/150‑1 (MQ=255)
gaagaaTGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGaaa < 1:227306/150‑1 (MQ=255)
aagaaTGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTTGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGaaaa > 1:3649658/1‑150 (MQ=255)
aagaaTGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGaata > 2:5246482/1‑148 (MQ=255)
agaaTGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGaaaaa > 2:3768926/1‑150 (MQ=255)
gaaTGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTTGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGaaaaaa > 1:1075682/1‑150 (MQ=255)
aaTGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAAt < 1:4345595/150‑1 (MQ=255)
aTGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATa > 2:352393/1‑150 (MQ=255)
aTGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATa < 1:2504045/150‑1 (MQ=255)
gagaGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAgg < 1:1014005/150‑1 (MQ=255)
agagTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGc < 2:1197043/150‑1 (MQ=255)
agTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCtt < 2:713518/150‑1 (MQ=255)
gTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTa < 2:2738975/150‑1 (MQ=255)
gTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTa < 2:1722980/150‑1 (MQ=255)
gTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTa > 1:2477507/1‑150 (MQ=255)
ataatTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTaaaa > 2:4376941/1‑150 (MQ=255)
atTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTTGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGt > 1:3484109/1‑150 (MQ=255)
atTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGt < 2:3604254/150‑1 (MQ=255)
ttCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTc < 2:2710516/150‑1 (MQ=255)
cacaTGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTTGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCtg > 2:2103015/1‑150 (MQ=255)
caTGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCtgat < 1:925059/150‑1 (MQ=255)
tGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCtgatga < 2:4107752/150‑1 (MQ=255)
aaaTAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAAc > 1:2397449/1‑150 (MQ=255)
aTAGTTCTAACAGTAGCTTCACTTGAATATATTTTGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATTATGAGGACTTTGATTTAAAAGGAAAAAATAGGCTTAAAAAGTCTGATGAAcgt > 2:2942379/1‑148 (MQ=255)
aTAGTTCTAACAGTAGCTTCACTTGAATATATTTTGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAActt < 1:870236/150‑1 (MQ=255)
aTAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAActt < 2:5544661/150‑1 (MQ=255)
aTAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAActt > 1:3761770/1‑150 (MQ=255)
tAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAActtc > 2:1427400/1‑150 (MQ=255)
gTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAActtctt > 1:2941572/1‑150 (MQ=255)
gTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAActtctt < 1:4104415/150‑1 (MQ=255)
gTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAActtctt < 2:1649424/150‑1 (MQ=255)
tAACAGTAGCTTCACTTGAATATATTTTGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAAt > 2:3158106/1‑150 (MQ=255)
tAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAAt > 2:4004836/1‑150 (MQ=255)
aCAGTAGCTTCACTTGAATATATTTTGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATgg > 2:3324296/1‑150 (MQ=255)
cAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATggg > 1:2146338/1‑150 (MQ=255)
gCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAgg > 1:4629227/1‑150 (MQ=255)
cTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGa > 1:1305364/1‑150 (MQ=255)
ttCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGGTGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGaa < 2:4795410/150‑1 (MQ=255)
ttCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGaa < 2:561748/150‑1 (MQ=255)
aCTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGaaaaa > 2:1053132/1‑150 (MQ=255)
ttGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACt < 1:4175416/150‑1 (MQ=255)
tGAATATATTTTGGCATTTTCCAA‑TTTCTTTTGGTTTTTTACGCAAGAGTAATCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACtt < 2:1333169/150‑1 (MQ=255)
tatatTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTGCaa < 1:2635181/150‑1 (MQ=255)
atatTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAAATTGCaaa > 2:3278991/1‑150 (MQ=255)
tttGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTGCAaacaa > 2:2551538/1‑150 (MQ=255)
ttGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAATAACTTGCAaacaac > 1:3323587/1‑150 (MQ=255)
tGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTGCAAacaaca > 2:5075128/1‑150 (MQ=255)
tGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTGAAAacaaca > 1:3842543/1‑150 (MQ=255)
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GAAGGAGCAAGATCTTAAAACGATAGTTGACGACAAAAAAATTATAATTTCAGTTGTGAGTGAACCTGGTTTTAATATCCGAGTCAGGAAGAATGAGAGTAATAATTCACATGAAATAGTTCTAACAGTAGCTTCACTTGAATATATTTGGGCATTTTCCAA‑TTTCTTTTGGGTTTTTACGCAAGAGTACTCCAAATCTCAGAAAAATAATGATGAGCACTTTGATTTAACAGGAAAAAATAGGCTTAAAAAGTCTGATGAACTTCTTAAATGGGCAAGGAAAAACTTGCAAACAACA > CP009273/1194216‑1194513
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
