Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F527 I0 R1 1651 322.4 10661268 95.2% 10149527 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,378,237 G→T 26.0% intergenic (‑19/‑137) ycjW ← / → ycjX LacI family putative transcriptional repressor/DUF463 family protein, putative P‑loop NTPase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,378,2370GT26.0% 614.6 / 168.9 276intergenic (‑19/‑137)ycjW/ycjXLacI family putative transcriptional repressor/DUF463 family protein, putative P‑loop NTPase
Reads supporting (aligned to +/- strand):  ref base G (102/102);  new base T (41/31);  total (143/133)
Fisher's exact test for biased strand distribution p-value = 3.39e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 286 total aligned reads displayed.

TTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGACTT  >  CP009273/1378090‑1378385
                                                                                                                                                   |                                                                                                                                                    
ttcttcAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGaa                                                                                                                                                    >  2:4221503/1‑150 (MQ=255)
  cttcAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCTAACg                                                                                                                                                  <  1:2796216/150‑1 (MQ=255)
  cttcAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACg                                                                                                                                                  >  1:4979331/1‑150 (MQ=255)
     cAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCTAACGTGa                                                                                                                                               <  1:2712706/150‑1 (MQ=255)
     cAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGa                                                                                                                                               >  1:3538832/1‑150 (MQ=255)
       aTGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAAt                                                                                                                                             >  2:220972/1‑150 (MQ=255)
          gCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCTATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAAtgct                                                                                                                                          <  2:312875/150‑1 (MQ=255)
           cccGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAAtgctg                                                                                                                                         >  2:428514/1‑150 (MQ=255)
              gTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCTAACGTGAATGCTGcac                                                                                                                                      <  1:64853/150‑1 (MQ=255)
                aaCACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCTAACGTGAATGCTGCACAt                                                                                                                                    <  2:475351/150‑1 (MQ=255)
                aaCACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGATTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCTAACGTGAATGCTGCACAt                                                                                                                                    >  2:3781787/1‑150 (MQ=255)
                  cacTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCTAACGTGAATGCTGCACATCt                                                                                                                                  >  2:3917691/1‑150 (MQ=255)
                  cacTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCt                                                                                                                                  <  2:1106932/150‑1 (MQ=255)
                  acttttttCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCt                                                                                                                                  <  1:5215291/147‑1 (MQ=255)
                   acTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCtt                                                                                                                                 <  2:5133931/150‑1 (MQ=255)
                       tttCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATgg                                                                                                                             <  2:1813144/150‑1 (MQ=255)
                          cgcgcgCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGt                                                                                                                          >  2:5015775/1‑150 (MQ=255)
                               gcTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGcc                                                                                                                     >  2:5168190/1‑150 (MQ=255)
                                     ggggAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGa                                                                                                               >  1:4153276/1‑150 (MQ=255)
                                     ggggAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGa                                                                                                               >  2:1950785/1‑150 (MQ=255)
                                         agaTATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCTAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGac                                                                                                           <  2:587374/150‑1 (MQ=255)
                                           atatTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGacaa                                                                                                         >  1:3007838/1‑150 (MQ=255)
                                                   ttGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCa                                                                                                 >  2:4648631/1‑150 (MQ=255)
                                                    tGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAg                                                                                                >  2:1236785/1‑150 (MQ=255)
                                                      cTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGtt                                                                                              >  2:4480676/1‑150 (MQ=255)
                                                      cTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGtt                                                                                              >  1:4733534/1‑150 (MQ=255)
                                                      cTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGtt                                                                                              >  1:2080481/1‑150 (MQ=255)
                                                       ttATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTg                                                                                             <  2:2348824/150‑1 (MQ=255)
                                                          ttCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATa                                                                                          <  2:2019601/150‑1 (MQ=255)
                                                          ttCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATa                                                                                          <  2:2806788/150‑1 (MQ=255)
                                                           tCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCTAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATaa                                                                                         >  1:3955448/1‑150 (MQ=255)
                                                           tCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCCTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATaa                                                                                         <  2:4129763/150‑1 (MQ=255)
                                                               cACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCaa                                                                                     <  1:4707258/150‑1 (MQ=255)
                                                                aCGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAAt                                                                                    <  1:389555/150‑1 (MQ=255)
                                                                 cgcgTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAAtg                                                                                   <  1:1570308/150‑1 (MQ=255)
                                                                  gcgTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCTAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAAtgg                                                                                  <  2:1412278/150‑1 (MQ=255)
                                                                      gATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCTAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAAtggcctg                                                                              >  1:1438933/1‑150 (MQ=255)
                                                                         aCGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAAtggcctggcc                                                                           <  1:2988799/150‑1 (MQ=255)
                                                                            gTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGccccc                                                                        <  2:4354066/150‑1 (MQ=255)
                                                                                aTTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACAt                                                                    <  2:1881932/150‑1 (MQ=255)
                                                                                 ttttGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCTAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACAtt                                                                   <  2:3267143/150‑1 (MQ=255)
                                                                                 ttttGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGTCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACAtt                                                                   <  2:5264973/150‑1 (MQ=255)
                                                                                 ttttGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACAtt                                                                   <  2:1627326/150‑1 (MQ=255)
                                                                                   ttGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCa                                                                 >  2:4568147/1‑150 (MQ=255)
                                                                                   ttGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCa                                                                 >  1:3181482/1‑150 (MQ=255)
                                                                                    tGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCat                                                                >  1:3320447/1‑150 (MQ=255)
                                                                                    tGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCat                                                                >  2:4905200/1‑150 (MQ=255)
                                                                                    tGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCat                                                                <  1:2262933/150‑1 (MQ=255)
                                                                                      aTACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCatat                                                              >  1:1059036/1‑150 (MQ=255)
                                                                                       tACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCTAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATc                                                             <  2:3916461/150‑1 (MQ=255)
                                                                                       tACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCTAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATc                                                             >  2:2269072/1‑150 (MQ=255)
                                                                                         cGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCt                                                           <  1:1813991/150‑1 (MQ=255)
                                                                                          gCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCtt                                                          <  1:428514/150‑1 (MQ=255)
                                                                                           ccTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTa                                                         >  2:4674301/1‑150 (MQ=255)
                                                                                            cTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTAc                                                        >  2:5321582/1‑150 (MQ=255)
                                                                                            cTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTAc                                                        >  2:1447036/1‑150 (MQ=255)
                                                                                            cTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTAc                                                        >  1:2979947/1‑150 (MQ=255)
                                                                                            cTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTAc                                                        <  1:5082221/150‑1 (MQ=255)
                                                                                            cTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTAc                                                        <  1:4087984/150‑1 (MQ=255)
                                                                                             tGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACg                                                       <  1:83967/150‑1 (MQ=255)
                                                                                                aaCCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAAt                                                    <  2:88705/150‑1 (MQ=255)
                                                                                                 aCCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCTAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATg                                                   <  2:118461/150‑1 (MQ=255)
                                                                                                    cTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCTAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGAtt                                                <  2:5216695/150‑1 (MQ=255)
                                                                                                    cTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCTAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGAtt                                                >  1:4139334/1‑150 (MQ=255)
                                                                                                      gtcAATATCATAAATAGTAGGGGACATAGTTCAGGAACTACGTCATAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGACCCCACATTCATATCCTTACGAATGAtttt                                              <  2:625632/148‑1 (MQ=255)
                                                                                                       gCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGAttttt                                             >  1:4383025/1‑150 (MQ=255)
                                                                                                        cAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGAtttttt                                            <  1:751762/150‑1 (MQ=255)
                                                                                                         aaTATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGAttttttt                                           <  2:74994/150‑1 (MQ=255)
                                                                                                         aaTATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGAttttttt                                           <  2:3554510/150‑1 (MQ=255)
                                                                                                         aaTATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGAttttttt                                           >  1:3787427/1‑150 (MQ=255)
                                                                                                          atatCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGAtttttttt                                          >  2:1535078/1‑150 (MQ=255)
                                                                                                            atCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCTAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCt                                        >  1:4560081/1‑150 (MQ=255)
                                                                                                             tCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTg                                       <  2:3068543/150‑1 (MQ=255)
                                                                                                              cATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTgg                                      >  2:4040385/1‑150 (MQ=255)
                                                                                                              cATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTgg                                      <  1:5311056/150‑1 (MQ=255)
                                                                                                               aTAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGt                                     >  2:3934288/1‑150 (MQ=255)
                                                                                                                 aaaTAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCt                                   >  2:1093323/1‑150 (MQ=255)
                                                                                                                  aaTAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCtt                                  >  2:260800/1‑150 (MQ=255)
                                                                                                                   aTAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTc                                 <  2:5248564/150‑1 (MQ=255)
                                                                                                                   aTAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTc                                 <  2:4328606/150‑1 (MQ=255)
                                                                                                                    tagtagGGGACATAGGTCAGGAACTCCGTCCTAACGAGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTCa                                >  2:82020/1‑150 (MQ=255)
                                                                                                                    tagtagGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCAAATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTCa                                >  2:3689863/1‑150 (MQ=255)
                                                                                                                       tagGGGTCATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTCagag                             <  1:4131949/150‑1 (MQ=255)
                                                                                                                         ggggACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTCAGagca                           <  2:2554244/150‑1 (MQ=255)
                                                                                                                           ggACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTCAGagcagc                         >  2:477471/1‑150 (MQ=255)
                                                                                                                            gACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTCAGAgcagca                        >  1:1718491/1‑150 (MQ=255)
                                                                                                                              cATAGGTCAGGAACTCCGTCCTAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTCAGAGCAGcaca                      <  1:2337780/150‑1 (MQ=255)
                                                                                                                              cATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCCGTTGATAATCAATGGCCTGGCCCCCACATTCATCACCTTACGAATGATTTTGTTACTGGTCTTCAGAGCAGcacc                      >  1:339826/1‑149 (MQ=255)
                                                                                                                              cATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTCAGAGCAGcaca                      >  1:2543349/1‑150 (MQ=255)
                                                                                                                                tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTCAGAGCAGCACAgg                    >  2:4939474/1‑150 (MQ=255)
                                                                                                                                 aGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTCAGAGCAGCACAGGa                   <  1:3647908/150‑1 (MQ=255)
                                                                                                                                   gTCAGGAACTCCGTCCTAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTCAGAGCAGCACAGGACa                 >  2:2455153/1‑150 (MQ=255)
                                                                                                                                      aGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTCAGAGCAGCACTGGACAGCa              >  2:2980166/1‑150 (MQ=255)
                                                                                                                                      aGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCa              >  1:1127867/1‑150 (MQ=255)
                                                                                                                                        gAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAAt            <  1:2926946/150‑1 (MQ=255)
                                                                                                                                          aCTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGa          <  1:2223821/150‑1 (MQ=255)
                                                                                                                                              cgtccgAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGACCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCg      <  1:4612271/150‑1 (MQ=255)
                                                                                                                                               gtccgAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGa     >  1:3822572/1‑150 (MQ=255)
                                                                                                                                                tccgAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACACCACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTGTCTGGTCTTCAGAGCAGCACAGGACAGCCATGAAGCGAc    >  2:134794/1‑150 (MQ=255)
                                                                                                                                                 ccgAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGACt   <  1:3689672/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
TTCTTCAATGGCCCGTAACACTTTTTCGCGCGCTTCCGGGGAGATATTAGTTTGCTTATTCAGCACGCGTGATACGGTGGATTTTGATACGCCTGCAACCCTGGCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTACGAATGATTTTTTTTCTGGTCTTCAGAGCAGCACAGGACAGCAATGAAGCGACTT  >  CP009273/1378090‑1378385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A