Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F527 I0 R1 1651 322.4 10661268 95.2% 10149527 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,842,467 C→A 28.6% G344W (GGG→TGG)  uhpB ← sensory histidine kinase in two‑component regulatory sytem with UhpA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,842,4670CA28.6% 547.6 / 188.4 273G344W (GGG→TGG) uhpBsensory histidine kinase in two‑component regulatory sytem with UhpA
Reads supporting (aligned to +/- strand):  ref base C (93/102);  new base A (32/46);  total (125/148)
Fisher's exact test for biased strand distribution p-value = 3.48e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.54e-01

Only 100 of 282 total aligned reads displayed.

AATACCGCGCCCTTCCAGCTCCATTTCCCGCATCAGTGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACGGCGCACGCTCTCTTCGGTTTCCAGCAACCGTTCA  >  CP009273/3842318‑3842615
                                                                                                                                                     |                                                                                                                                                    
aaTACCGCGCCCTTCCAGCTCCATTTCCCGCATCAGTGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGccc                                                                                                                                                      <  1:5078541/150‑1 (MQ=255)
aaTACCGCGCCCTTCCAGCTCCATTTCCCGCATCAGTGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGccc                                                                                                                                                      >  1:124388/1‑150 (MQ=255)
aaTACCGCGCCCTTCCAGCTCCATTTCCCGCATCAGTGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGccc                                                                                                                                                      >  2:4072489/1‑150 (MQ=255)
    ccGCGCCCTTCCAGCTCCATTTCCCGCATCAGTGAGCGGATGGCCTGCTCCAGGATGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGctc                                                                                                                                                  <  1:3313250/150‑1 (MQ=255)
     cgcgCCCTTCCAGCTCCATTTCCCGCATCAGTGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGctct                                                                                                                                                 <  1:2495622/150‑1 (MQ=255)
     cgcgCCCTTCCAGCTCCATTTCCCGAATCAGTGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAACCGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGctct                                                                                                                                                 <  1:1999076/150‑1 (MQ=255)
     cgcgCCCTTCCAGCTCCATGTCCCGCATCAGTGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACACACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGctct                                                                                                                                                 <  2:3239238/150‑1 (MQ=255)
       cgcCCTTCCAGCTCCATTTCCCGCATCAGTGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGc                                                                                                                                               >  1:818390/1‑150 (MQ=255)
           cTTCCAGCTCCATTTCCCGCATCAGTGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCa                                                                                                                                           >  2:2450259/1‑150 (MQ=255)
              cccgCTCCACGTCCCGCATCCGCGAGCGGATGGCCTGCTCCCGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGGTCGATGAGCTGCCCGCACTGCTTCACGc                                                                                                                                        <  2:3541228/147‑1 (MQ=255)
               cAGCTCCATTTCCCGCATCAGTGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCt                                                                                                                                       >  1:416366/1‑150 (MQ=255)
                      aTTTCCCGCATCAGTGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACACAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTa                                                                                                                                >  1:2864845/1‑150 (MQ=255)
                          cccGCATCTGTGTGCGGTTGGCCTGCTCCTGGGTGATATCATCCAAGTGGCGCGGACGTAACCGACCCAACAACCGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTg                                                                                                                            <  1:1844591/150‑1 (MQ=255)
                          cccGCATCAGTGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTg                                                                                                                            <  2:2026721/150‑1 (MQ=255)
                             gCATCAGTGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTgccg                                                                                                                         <  2:594961/150‑1 (MQ=255)
                             gCATCAGTGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTgccg                                                                                                                         >  2:4542477/1‑150 (MQ=255)
                               aTCAGTGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTgccgcc                                                                                                                       >  2:4619305/1‑150 (MQ=255)
                               aTCAGTGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTgccgcc                                                                                                                       >  2:414288/1‑150 (MQ=255)
                               aTCAGTGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTgccgcc                                                                                                                       >  2:3590888/1‑150 (MQ=255)
                                  aGTGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGc                                                                                                                    >  2:3035140/1‑150 (MQ=255)
                                   gTGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGcc                                                                                                                   <  1:1322430/150‑1 (MQ=255)
                                    tGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCg                                                                                                                  >  1:2574373/1‑150 (MQ=255)
                                    tGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCg                                                                                                                  >  2:4904754/1‑150 (MQ=255)
                                     gAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGc                                                                                                                 >  1:162487/1‑150 (MQ=255)
                                     gAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGc                                                                                                                 >  2:3468816/1‑150 (MQ=255)
                                      aGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACGGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCt                                                                                                                <  1:4389277/150‑1 (MQ=255)
                                        cGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGa                                                                                                              >  2:2689926/1‑150 (MQ=255)
                                        cGGATGGCCTGCTCCAGGGTGAGAGCATCCAACTTGCGCTGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGa                                                                                                              >  1:5258020/1‑150 (MQ=255)
                                         ggAGGGCCTGCTCCCGGGTGAGATCATCCAACGGGCGCGGACGTAACCGACCCAACAACCGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGaa                                                                                                             <  1:2812782/150‑1 (MQ=255)
                                          gATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAAc                                                                                                            >  2:4295681/1‑150 (MQ=255)
                                          gATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAAc                                                                                                            <  1:4218642/150‑1 (MQ=255)
                                             ggCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAAt                                                                                                         <  1:629820/150‑1 (MQ=255)
                                             ggCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAAt                                                                                                         >  1:5098872/1‑150 (MQ=255)
                                                  gCTCCCGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACTCACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCg                                                                                                    <  2:1750955/150‑1 (MQ=255)
                                                     ccAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCt                                                                                                 >  1:4833479/1‑150 (MQ=255)
                                                      cAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTg                                                                                                <  2:2192471/150‑1 (MQ=255)
                                                       tgggTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGa                                                                                               <  1:1028434/149‑1 (MQ=255)
                                                        gggTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCt                                                                                                                             <  2:2369964/119‑1 (MQ=255)
                                                        gggTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCt                                                                                                                             >  1:2369964/1‑119 (MQ=255)
                                                        gggTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACACTGCCCGCCTGAg                                                                                              >  2:3683063/1‑150 (MQ=255)
                                                           tGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACACCCGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTAc                                                                                           <  1:1459813/150‑1 (MQ=255)
                                                           tGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTAc                                                                                           <  2:4369444/150‑1 (MQ=255)
                                                              gaTCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGaa                                                                                        >  1:2041611/1‑150 (MQ=255)
                                                              gaTCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGaa                                                                                        >  2:3855035/1‑150 (MQ=255)
                                                                     cAACTGGCGCGGACGTAACCGACCCAACAACCGGCGCACCGCGTCGTAAACGCCCAGCGATAGTAGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGt                                                                                 <  1:1784653/150‑1 (MQ=255)
                                                                       aCTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGa                                                                               >  1:5197257/1‑150 (MQ=255)
                                                                        cTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGAt                                                                              <  2:3894182/150‑1 (MQ=255)
                                                                        cTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGAt                                                                              <  1:2619589/150‑1 (MQ=255)
                                                                        cTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGAt                                                                              <  2:4692434/150‑1 (MQ=255)
                                                                         tGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATg                                                                             <  2:1388396/150‑1 (MQ=255)
                                                                          ggCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATgg                                                                            >  1:3815630/1‑150 (MQ=255)
                                                                          ggCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATgg                                                                            <  2:473754/150‑1 (MQ=255)
                                                                            cgcgGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTc                                                                          <  2:4962224/150‑1 (MQ=255)
                                                                             gcgGACGTAACCGACCCAACACACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCt                                                                         <  2:5104933/150‑1 (MQ=255)
                                                                             gcgGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCt                                                                         <  1:611920/150‑1 (MQ=255)
                                                                              cgGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTg                                                                        >  1:5210196/1‑150 (MQ=255)
                                                                                 aCGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGAcc                                                                     <  1:4294834/150‑1 (MQ=255)
                                                                                      aCCGACCCAACAAACGGCGCATCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGatat                                                                <  2:5201906/150‑1 (MQ=255)
                                                                                         gACCCAACACACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATatcat                                                             <  2:4740106/150‑1 (MQ=255)
                                                                                           cccAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGAAGAGCTGCCCGCTCTGCTTCCCGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATCtcatca                                                           <  2:4038320/150‑1 (MQ=255)
                                                                                               acaaACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCa                                                       >  2:1130241/1‑150 (MQ=255)
                                                                                               acaaACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCa                                                       >  1:4015344/1‑150 (MQ=255)
                                                                                                caaACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAg                                                      >  2:4481188/1‑150 (MQ=255)
                                                                                                 aaaCGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGc                                                     >  2:693514/1‑150 (MQ=255)
                                                                                                  aaCGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCTCGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCTTGCAGCt                                                    >  2:3982416/1‑150 (MQ=255)
                                                                                                  aaCGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCt                                                    >  2:1889140/1‑150 (MQ=255)
                                                                                                  aaCGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCt                                                    <  1:3961923/150‑1 (MQ=255)
                                                                                                   agggCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCTCGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTc                                                   <  1:4951963/148‑1 (MQ=255)
                                                                                                    cGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCa                                                  <  2:4276429/150‑1 (MQ=255)
                                                                                                      gcgcACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCAcg                                                >  1:1909773/1‑150 (MQ=255)
                                                                                                        gcACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCAcgcg                                              <  2:4841700/150‑1 (MQ=255)
                                                                                                          aCCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGcc                                            >  2:3306936/1‑150 (MQ=255)
                                                                                                          aCCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGcc                                            <  2:800384/150‑1 (MQ=255)
                                                                                                            cgcgTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCcac                                          >  1:1503998/1‑150 (MQ=255)
                                                                                                              cgtcgtAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACAt                                        <  1:3468816/150‑1 (MQ=255)
                                                                                                              cgtcgtAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACAt                                        >  2:4204321/1‑150 (MQ=255)
                                                                                                              cgtcgtAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACAt                                        <  1:4681699/150‑1 (MQ=255)
                                                                                                               gtcgtAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGTCGTTATCTGCCGCCAGGCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATc                                       <  2:3234670/150‑1 (MQ=255)
                                                                                                               gtcgtAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATc                                       >  1:2984547/1‑150 (MQ=255)
                                                                                                                  gtAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACg                                    >  1:994386/1‑150 (MQ=255)
                                                                                                                   tAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACgg                                   >  1:1016884/1‑150 (MQ=255)
                                                                                                                   tAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACgg                                   >  1:565432/1‑150 (MQ=255)
                                                                                                                    aaaCGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCGTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACGgc                                  <  1:1485870/150‑1 (MQ=255)
                                                                                                                        gCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACGGCGCAc                              <  1:4456524/150‑1 (MQ=255)
                                                                                                                         cccAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACGGCGCACg                             <  1:5298371/150‑1 (MQ=255)
                                                                                                                           cAGCGATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACGGCGCACGct                           >  2:2514044/1‑150 (MQ=255)
                                                                                                                               gATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACGGCGCACGctctct                       >  1:2877880/1‑150 (MQ=255)
                                                                                                                               gATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACGGCGCACGctctct                       <  2:2741027/150‑1 (MQ=255)
                                                                                                                               gATAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACGGCGCACGctctct                       <  1:4435654/150‑1 (MQ=255)
                                                                                                                                agaGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACGGCGCACGCTCTCtt                      <  2:2939041/148‑1 (MQ=255)
                                                                                                                                 tAGTTGTTCGATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACGGCGCACGCTCTCTTc                     <  1:3122048/150‑1 (MQ=255)
                                                                                                                                        tCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACGGCGCACGCTCTCTTCGGTTTcc              <  1:4513143/150‑1 (MQ=255)
                                                                                                                                         cGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACGGCGCACGCTCTCTTCGGTTTCCa             >  2:5013895/1‑150 (MQ=255)
                                                                                                                                          gATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACGGCGCACGCTCTCTTCGGTTTCCAg            >  2:2774166/1‑150 (MQ=255)
                                                                                                                                          gATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACGGCGCACGCTCTCTTCGGTTTCCAg            <  2:1286371/150‑1 (MQ=255)
                                                                                                                                          gATGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACGGCGCACGCTCTCTTCGGTTTCCAg            >  1:1668850/1‑150 (MQ=255)
                                                                                                                                           aTGAGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACGGCGCACGCTCTCTTCGGTTTCCAGc           <  2:1521959/150‑1 (MQ=255)
                                                                                                                                              aGCTGCCAGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACGGCGCACGCTCTCTTCGGTTTCCAGCAAc        >  2:656811/1‑150 (MQ=255)
                                                                                                                                                 tGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACGGCGCACGCTCTCGTCGGTTTCCAGCAACCGt     >  2:207622/1‑150 (MQ=255)
                                                                                                                                                  gCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACGGCGCACGCTCTCTTCGGTTTCCAGCACCCGtt    >  2:1964053/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
AATACCGCGCCCTTCCAGCTCCATTTCCCGCATCAGTGAGCGGATGGCCTGCTCCAGGGTGAGATCATCCAACTGGCGCGGACGTAACCGACCCAACAAACGGCGCACCGCGTCGTAAACGCCCAGCGATAGTTGTTCGATGAGCTGCCCGCTCTGCTTCACGCTGGCGTTATCTGCCGCCAGCCGCTGAACAATGCCCGCCTGAGTACGAATAGCAGTGATGGTCTGACCGATATCATCATGCAGCTCACGCGCCACATCACGGCGCACGCTCTCTTCGGTTTCCAGCAACCGTTCA  >  CP009273/3842318‑3842615

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A