Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F56 I0 R1
|
543 |
285.0 |
9366284 |
95.7% |
8963533 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
1,539,484 |
G→A |
15.7% |
pseudogene (488/951 nt) |
yddK ← |
pseudogene, leucine‑rich protein; putative glycoportein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 1,539,484 | 0 | G | A | 15.7%
| 694.9
/ 101.9
| 248 | pseudogene (488/951 nt) | yddK | pseudogene, leucine‑rich protein; putative glycoportein |
| Reads supporting (aligned to +/- strand): ref base G (102/107); new base A (16/23); total (118/130) |
| Fisher's exact test for biased strand distribution p-value = 3.89e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 |
Only 100 of 253 total aligned reads displayed.
ACCTGCAACAATATCAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGTTATTATCAAGATT > CP009273/1539336‑1539632
|
cTGCAACAATATCAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCa > 2:1424160/1‑149 (MQ=255)
caacaaTATCAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATCTCAATATTTCTGAGAGCatta < 1:3989899/149‑1 (MQ=255)
caacaaTATCAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGTACatta > 1:3478738/1‑149 (MQ=255)
caacaaTATCAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCatta < 1:1495521/149‑1 (MQ=255)
caacaaTATCAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCatta < 1:1654776/149‑1 (MQ=255)
atatCAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCattattatt < 2:3024524/149‑1 (MQ=255)
atatCAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCattattatt > 1:2796538/1‑149 (MQ=255)
atatCAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCattattatt > 1:2057158/1‑149 (MQ=255)
atCAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAACATTATTATTCa < 1:4603540/149‑1 (MQ=255)
atttAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATAGCACAAACTCTAGTTGATTATGTGCCTCACTAAAATAATTAACAGATGAAAGCCTATCTATATCAAAAATTATGAGAGCATTATTATTCATat > 2:90499/3‑148 (MQ=255)
aGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAg < 2:3096937/149‑1 (MQ=255)
gTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGa > 1:2262699/1‑149 (MQ=255)
aaTTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGatat < 2:1617967/149‑1 (MQ=255)
aTTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGatata < 2:1980629/149‑1 (MQ=255)
aTTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAACATTATTATTCATAGatata > 2:184633/1‑149 (MQ=255)
aTTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTAAATCAATATTTCTGAGAGCATTATTATTCATAGatata > 2:2370286/1‑149 (MQ=255)
tATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTa > 1:4326261/1‑149 (MQ=255)
ggCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATa > 2:1022731/1‑149 (MQ=255)
gCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATAc < 1:3916923/149‑1 (MQ=255)
gCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAACATTATTATTCATAGATATATGTGTAATAc > 2:3002294/1‑149 (MQ=255)
ttCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACAtt > 1:4038327/1‑149 (MQ=255)
ttCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACAtt > 1:3531380/1‑149 (MQ=255)
tCAGTTATTGCAGACATTCTCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACAttt < 1:2534674/149‑1 (MQ=255)
gTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGc < 1:2430490/149‑1 (MQ=255)
aTTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCt < 1:1180985/149‑1 (MQ=255)
aTTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCt < 2:4423933/149‑1 (MQ=255)
aTTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCt > 1:2490126/1‑149 (MQ=255)
aGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTAAATTTATGACTTGAgg > 2:4193765/1‑149 (MQ=255)
aGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAACATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAgg > 1:4646891/1‑149 (MQ=255)
gCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGa > 1:2850847/1‑149 (MQ=255)
ccATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGaa > 2:374747/1‑149 (MQ=255)
cATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGaaa < 1:4197335/149‑1 (MQ=255)
cATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGaaa > 2:896564/1‑149 (MQ=255)
aTTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGaaaa < 2:1681342/149‑1 (MQ=255)
aaGATTCTAATTGCACAAACTCTCGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTAtt > 2:2751254/1‑149 (MQ=255)
aaGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTAtt < 1:1033199/149‑1 (MQ=255)
aaGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTAtt < 1:3398809/149‑1 (MQ=255)
aGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTg > 2:1155485/1‑149 (MQ=255)
taTTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAACATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGa < 2:190964/148‑1 (MQ=255)
gATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGa > 1:4535152/1‑149 (MQ=255)
ttCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACt > 1:4541523/1‑149 (MQ=255)
ttCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAACATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACt < 2:1787084/149‑1 (MQ=255)
ttCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAACCTATCTATATCAATATTTCTGAGAACATTATTATTCATAGATCTATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACt > 2:323262/1‑149 (MQ=255)
tAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCaa < 1:1423610/149‑1 (MQ=255)
tAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCaa < 1:1424175/149‑1 (MQ=255)
tAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCaa < 2:4055856/149‑1 (MQ=255)
aaaCTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAACATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTAc < 1:3002294/149‑1 (MQ=255)
aaCTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACt > 1:1575732/1‑149 (MQ=255)
aCTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTa > 1:4358696/1‑149 (MQ=255)
ctctAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTTTTGACTCAAGAGCATTACTAt < 2:3616194/149‑1 (MQ=255)
tctAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTAtt > 2:1396227/1‑149 (MQ=255)
tAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCa > 1:2234040/1‑149 (MQ=255)
tAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAACATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCa < 1:2462500/149‑1 (MQ=255)
aGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAg > 2:525026/1‑149 (MQ=255)
gTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGa > 1:3620235/1‑149 (MQ=255)
ttGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGAc < 2:3997127/149‑1 (MQ=255)
ttGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAACATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGAc < 1:1769644/149‑1 (MQ=255)
gATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACtt < 2:2524610/149‑1 (MQ=255)
ttATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAg < 1:4191985/149‑1 (MQ=255)
tATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGc > 2:4558388/1‑149 (MQ=255)
tgtgCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCtt > 2:934457/1‑149 (MQ=255)
gtgCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCttt < 2:838616/149‑1 (MQ=255)
tgCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTa < 2:346018/149‑1 (MQ=255)
cACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGt > 2:1571379/1‑149 (MQ=255)
cACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGt > 1:2302708/1‑149 (MQ=255)
aCTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTc < 1:2011651/149‑1 (MQ=255)
aCTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAACATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTc < 2:404938/149‑1 (MQ=255)
aaaaTAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTAt < 2:1812876/149‑1 (MQ=255)
aaaaTAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTAt < 2:2270019/149‑1 (MQ=255)
aaaaTAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAACATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTAt < 1:2289622/149‑1 (MQ=255)
aaaTAAGTACCTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATc < 2:4522093/149‑1 (MQ=255)
aGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAgt > 2:2825514/1‑149 (MQ=255)
gTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAgtt < 1:1484527/149‑1 (MQ=255)
aaCTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCCTTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAgttgt > 2:412857/1‑148 (MQ=255)
aaCTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAgttgg > 1:2417323/1‑149 (MQ=255)
aCTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAgttggt > 1:3826764/1‑149 (MQ=255)
aCTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAgttggt > 1:3761186/1‑149 (MQ=255)
gatgaAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGc > 2:2916946/1‑149 (MQ=255)
gatgaAAGCCTATCTATATCAATATTTCTGAGAACATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGc > 1:3275571/1‑149 (MQ=255)
aaaGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCa > 2:3880493/1‑149 (MQ=255)
aaaGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCa > 2:2053368/1‑149 (MQ=255)
aaGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCaa > 1:494818/1‑149 (MQ=255)
atctatATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAAtgtg > 1:913122/1‑149 (MQ=255)
tctatATCAATATTTCTGAGAACATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAAtgtgt < 2:4646891/149‑1 (MQ=255)
ctatATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAAtgtgtg > 1:864214/1‑149 (MQ=255)
tataTCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGa < 1:2909638/149‑1 (MQ=255)
tataTCAATATTTCTGAGAACATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGa < 2:2705710/149‑1 (MQ=255)
atCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAAtt > 2:1109522/1‑149 (MQ=255)
tCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTg < 1:63356/149‑1 (MQ=255)
aaTATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGt < 2:2262699/149‑1 (MQ=255)
aaTATTTCTGAGAACATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGt < 1:4149623/149‑1 (MQ=255)
atTTCTGAGAACATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGttat > 1:4677008/1‑149 (MQ=255)
tttCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGttatt < 2:1854528/149‑1 (MQ=255)
ttCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGttatta < 2:3616626/149‑1 (MQ=255)
cTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGTTATTATc < 1:2715939/149‑1 (MQ=255)
cTGAGAACATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGTTATTATc < 1:2169602/149‑1 (MQ=255)
tGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGTTATTATCa > 2:4227036/1‑149 (MQ=255)
tGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGTTATTATCa < 1:769717/149‑1 (MQ=255)
gagaGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGTTATTATCaa < 2:78846/149‑1 (MQ=255)
agCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGTTATTATCAAGAt > 1:2657954/1‑149 (MQ=255)
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ACCTGCAACAATATCAGTTAATTGATTATGGCTGAGATTCAGGTATTGCAGCCATTCGCAAGATTCTAATTGCACAAACTCTAGTTGATTATGTGCCGCACTAAAATAAGTAACTGATGAAAGCCTATCTATATCAATATTTCTGAGAGCATTATTATTCATAGATATATGTGTAATACTTACATTTCTGCCTTGAGGAAAATTTATTGACTCAAGAGCATTACTATTCAGACTTAGCTTTACGAGTCTATCGTAGTTGGTTGCATCAAAATGTGTGAATTGGTTATTATCAAGATT > CP009273/1539336‑1539632
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
